Message boards :
ATLAS application :
Native Atlas Guide
Message board moderation
Author | Message |
---|---|
Send message Joined: 17 Aug 17 Posts: 84 Credit: 8,855,889 RAC: 15,793 |
Does anyone have an up-to-date guide at all? I tried following this one https://lhcathome.cern.ch/lhcathome/forum_thread.php?id=4840 but kept getting errors, when I try and run the tasks they fail with a computational error. I have CMVFS setup and the Theory tasks are running fine. Thanks |
Send message Joined: 15 Jun 08 Posts: 2553 Credit: 255,782,418 RAC: 78,347 |
Perhaps it's just a minor issue. A logfile might be helpful but so far even errors are not yet reported. Meanwhile you may post the output of: cvmfs_config probe cvmfs_config stat And you may check whether Singularity (-> now called Apptainer) is installed. |
Send message Joined: 17 Aug 17 Posts: 84 Credit: 8,855,889 RAC: 15,793 |
I don't think I have Singularity / Apptainer installed, is there a guide to doing so? |
Send message Joined: 15 Jun 08 Posts: 2553 Credit: 255,782,418 RAC: 78,347 |
Your Linux distribution may provide an installation package. If so, it should be enough to - install it - add the user running BOINC to the apptainer group - log out and login that user (or reboot) More information can be found here: https://github.com/apptainer/apptainer |
Send message Joined: 17 Aug 17 Posts: 84 Credit: 8,855,889 RAC: 15,793 |
Found the guide here : https://apptainer.org/docs/admin/main/installation.html WU is running a lot longer than it did before so I think I am good now, oddly the CPU and memory usage is minimum, is that normal? |
Send message Joined: 15 Jun 08 Posts: 2553 Credit: 255,782,418 RAC: 78,347 |
Check the stderr.txt in the "slots" directory your task is running in. It should end with something like: [2022-07-22 10:08:58] Set ATHENA_PROC_NUMBER=2 [2022-07-22 10:08:58] Starting ATLAS job with PandaID=5533113941 [2022-07-22 10:08:58] Running command: /usr/bin/singularity exec --pwd /home/boinc3/BOINC_ATLAS/slots/0 -B /cvmfs,/home /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh After a few minutes (be patient) there should also be a subdirectory like "PanDA_Pilot-5533113941" and lots of other files. |
Send message Joined: 17 Aug 17 Posts: 84 Credit: 8,855,889 RAC: 15,793 |
Second one is maxing the CPU now, odd that the first one didnt |
Send message Joined: 2 May 07 Posts: 2245 Credit: 174,063,878 RAC: 11,141 |
This is over the day possible with some Tasks. When a Atlas-Task is running over half a day, and no single Core using, something went wrong. You can delete this Task. Have also up to five Tasks a day. |
Send message Joined: 13 May 14 Posts: 387 Credit: 15,314,184 RAC: 0 |
The steps required to run native ATLAS depend heavily on the OS you are using, so it's hard to provide a single guide that works for everyone. But there are instructions available for specific platforms, eg Ubuntu 20.04. The options for running ATLAS Linux are listed in this post: https://lhcathome.cern.ch/lhcathome/forum_thread.php?id=5630&postid=44620#44620 I see now that all your tasks are successfully completing so feel free to share what you had to do to make it work :) |
Send message Joined: 12 Jun 18 Posts: 126 Credit: 53,906,164 RAC: 0 |
Does anyone have an up-to-date guide at all? I tried following this one https://lhcathome.cern.ch/lhcathome/forum_thread.php?id=4840 but kept getting errors, when I try and run the tasks they fail with a computational error.After some trial 'n error this is what works for me for native ATLAS & Theory apps running Linux Mint 20.3: sudo apt install runc sudo apt install docker.io -y sudo docker pull cvmfs/service wget https://ecsft.cern.ch/dist/cvmfs/cvmfs-release/cvmfs-release-latest_all.deb sudo dpkg -i cvmfs-release-latest_all.deb rm -f cvmfs-release-latest_all.deb sudo apt-get update sudo apt-get install cvmfs -y sudo wget https://lhcathome.cern.ch/lhcathome/download/default.local -O /etc/cvmfs/default.local Open /etc/cvmfs/ as root: In /etc/cvmfs/default.local add "single": ------------------------------------------------------ start of default.conf ------------------------------------------------ CVMFS_CLIENT_PROFILE=single ------------------------------------------------------ end of default.conf ------------------------------------------------ Edit /etc/cvmfs/default.local to this: ------------------------------------------------------ start of default.local ------------------------------------------------ # Must be set: the repositories required for ATLAS/Theory # If "CVMFS_DEFAULT_DOMAIN" is set to "cern.ch" like in /etc/cvmfs/default.d/50-cern.conf simple names will expand to FQRNs, e.g. atlas -> atlas.cern.ch CVMFS_REPOSITORIES="atlas,atlas-condb,grid,cernvm-prod,sft,alice" # Must be set to ensure openhtc.io is used: CVMFS_USE_CDN=yes CVMFS_HTTP_PROXY="auto;DIRECT" # Additional options CVMFS_KCACHE_TIMEOUT=2 CVMFS_MAX_RETRIES=3 ------------------------------------------------------ end of default.local ------------------------------------------------ sudo cvmfs_config setup sudo cvmfs_config reload (May not be needed but it doesn't hurt.) cvmfs_config probe If the probe fails, try to restart autofs with: sudo systemctl restart autofs |
Send message Joined: 14 Sep 08 Posts: 52 Credit: 64,095,127 RAC: 2,731 |
Found the guide here : https://apptainer.org/docs/admin/main/installation.html Looks like there are two versions, apptainer and apptainer-suid. Curious which one did you install? |
©2025 CERN