Message boards :
ATLAS application :
Container creation failed?
Message board moderation
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Send message Joined: 17 Aug 17 Posts: 129 Credit: 12,140,497 RAC: 16,402 |
Hi, I'll say first that I am a bit of a newb when it comes to Linux, I did manage to get CVMFS setup and confirmed working however the apps seem to be failing out with this error: "FATAL: container creation failed: hook function for tag prelayer returns error: failed to create /var/lib/alternatives directory: mkdir /var/lib/alternatives: permission denied" Any idea what I missed? WU as an example: https://lhcathome.cern.ch/lhcathome/result.php?resultid=344071336 Thanks in advance |
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Send message Joined: 15 Jun 08 Posts: 2713 Credit: 293,603,806 RAC: 153,307 |
This is the main issue: [2022-02-10 06:43:50] Checking for singularity binary... [2022-02-10 06:43:50] Singularity is not installed, using version from CVMFS You may need to install a recent Singularity package from your Linux repositories. Be aware that your ATLAS uses 12 threads during the main calculation phase but only 1 thread during setup and stage out. Setup can take up to 30 min and inexperienced users may think the task is idle. |
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Send message Joined: 17 Aug 17 Posts: 129 Credit: 12,140,497 RAC: 16,402 |
Thanks, is there a guide avaliable? |
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Send message Joined: 15 Jun 08 Posts: 2713 Credit: 293,603,806 RAC: 153,307 |
Thanks, is there a guide avaliable? Since you are running Linux Mint 20.3 which is derived from Ubuntu 20.04 you may check this links: https://sylabs.io/singularity/ https://github.com/apptainer/singularity/issues/5390#issuecomment-899111181 https://lhcathome.cern.ch/lhcathome/forum_thread.php?id=4840 |
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Send message Joined: 17 Aug 17 Posts: 129 Credit: 12,140,497 RAC: 16,402 |
Awesome thank you!, ill take a look this evening :) |
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