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ATLAS application :
Atlas-native config same as other natives???
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Send message Joined: 12 Jun 18 Posts: 126 Credit: 52,457,949 RAC: 23,953 |
Thanks to Laurence for helping me tweak the config for Linux Mint 19.1: wget https://ecsft.cern.ch/dist/cvmfs/cvmfs-release/cvmfs-release-latest_all.deb sudo dpkg -i cvmfs-release-latest_all.deb rm -f cvmfs-release-latest_all.deb sudo apt-get update sudo apt-get install cvmfs sudo apt install glibc-doc open-iscsi watchdog Configure CVMFS: sudo wget https://lhcathomedev.cern.ch/lhcathome-dev/download/default.local -O /etc/cvmfs/default.local sudo cvmfs_config setup sudo echo "/cvmfs /etc/auto.cvmfs" > /etc/auto.master.d/cvmfs.autofs Ensure autofs is running with the latest configuration: sudo systemctl autofs restart Test CVMFS: cvmfs_config probeThe probe returns: Probing /cvmfs/atlas.cern.ch... OK Probing /cvmfs/atlas-condb.cern.ch... OK Probing /cvmfs/grid.cern.ch... OK Probing /cvmfs/cernvm-prod.cern.ch... OK Probing /cvmfs/grid.cern.ch... OK Probing /cvmfs/sft.cern.ch... OK Probing /cvmfs/alice.cern.ch... OKThis looked like I could run Atlas-native WUs but when I try I return all errors. What do I need to do to get Atlas-native to run sans VirtualBox??? |
Send message Joined: 15 Jun 08 Posts: 2386 Credit: 223,040,502 RAC: 136,849 |
This looked like I could run Atlas-native WUs but when I try I return all errors Does it mean that you still get nothing but errors or does it mean that your tasks succeed since you implemented Laurence's advice? I guess the first but I'm not sure. What do I need to do to get Atlas-native to run sans VirtualBox You may set your computers "visible" at the preferences page to allow other volunteers to check your stderr.txt for possible reasons. |
Send message Joined: 12 Jun 18 Posts: 126 Credit: 52,457,949 RAC: 23,953 |
This is after doing what he said. I either purged VB & rebooted or added LHC on a computer with no VB. sudo dpkg -l | grep virtualbox sudo apt-get purge virtualbox-6.0 virtualbox-qt Toga opened. Looks like it cannot find its singularity: https://lhcathome.cern.ch/lhcathome/result.php?resultid=227041683 |
Send message Joined: 2 May 07 Posts: 2071 Credit: 156,192,791 RAC: 103,819 |
Only Scientific Linux 6 and CentOS6 can run without Singularity. All other need installing of Singularity. |
Send message Joined: 12 Jun 18 Posts: 126 Credit: 52,457,949 RAC: 23,953 |
Now if I could just learn how to install my own Singularity. Maybe this is it: http://singularity.lbl.gov/quickstart |
Send message Joined: 12 Jun 18 Posts: 126 Credit: 52,457,949 RAC: 23,953 |
This is not working for Linux Mint 19.1. sudo apt install git git clone https://github.com/singularityware/singularity.git cd singularity ./autogen.sh ./configure --prefix=/usr/local make sudo make installbash: ./autogen.sh: No such file or directory |
Send message Joined: 15 Nov 14 Posts: 602 Credit: 24,371,321 RAC: 0 |
This is not working for Linux Mint 19.1. This works for me on Ubuntu 16.04/18.04. It installs Singularity version 2.6.0, which is the most recent one that works (2.6.1 and later don't). wget https://github.com/singularityware/singularity/releases/download/2.6.0/singularity-2.6.0.tar.gz tar xvf singularity-2.6.0.tar.gz cd singularity-2.6.0 sudo apt install libarchive-dev ./configure --prefix=/usr/local make sudo make install To check the version installed: singularity --version To check the usage: singularity --help |
Send message Joined: 12 Jun 18 Posts: 126 Credit: 52,457,949 RAC: 23,953 |
Thanks Jim1348, got it running on most computers. When I solve how to remote into "cannot acquire name on session bus" computers I'll get the rest. I ran it like this: wget https://github.com/singularityware/singularity/releases/download/2.6.0/singularity-2.6.0.tar.gz ; tar xvf singularity-2.6.0.tar.gz ; cd singularity-2.6.0 ; sudo apt install libarchive-dev ; ./configure --prefix=/usr/local ; make ; sudo make install ; sudo reboot |
Send message Joined: 15 Nov 14 Posts: 602 Credit: 24,371,321 RAC: 0 |
That's nice. I have always wanted to combine the commands somehow. |
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