Message boards : ATLAS application : Atlas-native config same as other natives???
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Aurum

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Message 38771 - Posted: 11 May 2019, 21:00:20 UTC

Thanks to Laurence for helping me tweak the config for Linux Mint 19.1:
wget https://ecsft.cern.ch/dist/cvmfs/cvmfs-release/cvmfs-release-latest_all.deb
sudo dpkg -i cvmfs-release-latest_all.deb
rm -f cvmfs-release-latest_all.deb
sudo apt-get update
sudo apt-get install cvmfs
sudo apt install glibc-doc open-iscsi watchdog
Configure CVMFS:
sudo wget https://lhcathomedev.cern.ch/lhcathome-dev/download/default.local -O /etc/cvmfs/default.local
sudo cvmfs_config setup
sudo echo "/cvmfs /etc/auto.cvmfs" > /etc/auto.master.d/cvmfs.autofs
Ensure autofs is running with the latest configuration:
sudo systemctl autofs restart
Test CVMFS:
cvmfs_config probe
The probe returns:
Probing /cvmfs/atlas.cern.ch... OK
Probing /cvmfs/atlas-condb.cern.ch... OK
Probing /cvmfs/grid.cern.ch... OK
Probing /cvmfs/cernvm-prod.cern.ch... OK
Probing /cvmfs/grid.cern.ch... OK
Probing /cvmfs/sft.cern.ch... OK
Probing /cvmfs/alice.cern.ch... OK
This looked like I could run Atlas-native WUs but when I try I return all errors. What do I need to do to get Atlas-native to run sans VirtualBox???
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computezrmle

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Message 38772 - Posted: 11 May 2019, 21:34:28 UTC - in response to Message 38771.  

This looked like I could run Atlas-native WUs but when I try I return all errors
.
.
.
Thanks to Laurence for helping me tweak the config for Linux Mint 19.1


Does it mean that you still get nothing but errors or does it mean that your tasks succeed since you implemented Laurence's advice?
I guess the first but I'm not sure.

What do I need to do to get Atlas-native to run sans VirtualBox

You may set your computers "visible" at the preferences page to allow other volunteers to check your stderr.txt for possible reasons.
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Aurum

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Message 38773 - Posted: 11 May 2019, 21:39:46 UTC - in response to Message 38772.  
Last modified: 11 May 2019, 21:46:58 UTC

This is after doing what he said. I either purged VB & rebooted or added LHC on a computer with no VB.
sudo dpkg -l | grep virtualbox
sudo apt-get purge virtualbox-6.0 virtualbox-qt

Toga opened.

Looks like it cannot find its singularity: https://lhcathome.cern.ch/lhcathome/result.php?resultid=227041683
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maeax

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Message 38777 - Posted: 12 May 2019, 5:01:03 UTC

Only Scientific Linux 6 and CentOS6 can run without Singularity.
All other need installing of Singularity.
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Aurum

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Message 38781 - Posted: 12 May 2019, 14:16:38 UTC - in response to Message 38777.  
Last modified: 12 May 2019, 14:19:54 UTC

Now if I could just learn how to install my own Singularity.

Maybe this is it: http://singularity.lbl.gov/quickstart
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Aurum

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Message 38782 - Posted: 12 May 2019, 14:32:02 UTC - in response to Message 38781.  

This is not working for Linux Mint 19.1.
sudo apt install git
git clone https://github.com/singularityware/singularity.git
cd singularity
./autogen.sh
./configure --prefix=/usr/local
make
sudo make install
bash: ./autogen.sh: No such file or directory
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Jim1348

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Message 38783 - Posted: 12 May 2019, 15:15:02 UTC - in response to Message 38782.  

This is not working for Linux Mint 19.1.

This works for me on Ubuntu 16.04/18.04. It installs Singularity version 2.6.0, which is the most recent one that works (2.6.1 and later don't).

wget https://github.com/singularityware/singularity/releases/download/2.6.0/singularity-2.6.0.tar.gz
tar xvf singularity-2.6.0.tar.gz
cd singularity-2.6.0
sudo apt install libarchive-dev
./configure --prefix=/usr/local
make
sudo make install

To check the version installed: singularity --version
To check the usage: singularity --help
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Aurum

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Message 38785 - Posted: 12 May 2019, 18:25:51 UTC - in response to Message 38783.  

Thanks Jim1348, got it running on most computers. When I solve how to remote into "cannot acquire name on session bus" computers I'll get the rest.
I ran it like this:
wget https://github.com/singularityware/singularity/releases/download/2.6.0/singularity-2.6.0.tar.gz ; tar xvf singularity-2.6.0.tar.gz ; cd singularity-2.6.0 ; sudo apt install libarchive-dev ; ./configure --prefix=/usr/local ; make ; sudo make install ; sudo reboot
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Jim1348

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Message 38793 - Posted: 13 May 2019, 10:49:00 UTC - in response to Message 38785.  
Last modified: 13 May 2019, 10:49:15 UTC

That's nice. I have always wanted to combine the commands somehow.
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Message boards : ATLAS application : Atlas-native config same as other natives???


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