| Name | YklMDmmgBT5nsSi4apGgGQJmABFKDmABFKDm4ySLDmcXVKDmoaptKm_0 |
| Workunit | 223136847 |
| Created | 20 May 2024, 6:28:58 UTC |
| Sent | 20 May 2024, 9:31:31 UTC |
| Report deadline | 28 May 2024, 9:31:31 UTC |
| Received | 20 May 2024, 10:22:43 UTC |
| Server state | Over |
| Outcome | No reply |
| Client state | Compute error |
| Exit status | 0 (0x00000000) |
| Computer ID | 10804872 |
| Run time | 43 min 41 sec |
| CPU time | 2 min 53 sec |
| Validate state | Initial |
| Credit | 0.00 |
| Device peak FLOPS | 44.07 GFLOPS |
| Application version | ATLAS Simulation v3.01 (native_mt) x86_64-pc-linux-gnu |
| Peak working set size | 2.08 GB |
| Peak swap size | 2.63 GB |
| Peak disk usage | 1.15 GB |
Stderr output
<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
05:32:27 (80367): wrapper (7.7.26015): starting
05:32:27 (80367): wrapper: running run_atlas (--nthreads 8)
[2024-05-20 05:32:27] Arguments: --nthreads 8
[2024-05-20 05:32:27] Threads: 8
[2024-05-20 05:32:27] Checking for CVMFS
[2024-05-20 05:32:27] Probing /cvmfs/atlas.cern.ch... OK
[2024-05-20 05:32:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-05-20 05:32:27] Running cvmfs_config stat atlas.cern.ch
[2024-05-20 05:32:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-05-20 05:32:27] 2.11.2.0 3907 27 72008 132943 0 472 16071767 18432001 11546 130560 1 552829 98.711 1364913 12522 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2024-05-20 05:32:27] CVMFS is ok
[2024-05-20 05:32:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-05-20 05:32:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2024-05-20 05:32:27] Further information can be found at the LHC@home message board.
[2024-05-20 05:32:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-05-20 05:32:27] Checking for apptainer binary...
[2024-05-20 05:32:27] Using apptainer found in PATH at /usr/bin/apptainer
[2024-05-20 05:32:27] Running /usr/bin/apptainer --version
[2024-05-20 05:32:27] apptainer version 1.3.0-1.el7
[2024-05-20 05:32:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-05-20 05:32:28] c7-16-9.aglt2.org
[2024-05-20 05:32:28] apptainer works
[2024-05-20 05:32:28] Set ATHENA_PROC_NUMBER=8
[2024-05-20 05:32:28] Set ATHENA_CORE_NUMBER=8
[2024-05-20 05:32:28] Starting ATLAS job with PandaID=6210348424
[2024-05-20 05:32:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-05-20 06:16:05] *** The last 200 lines of the pilot log: ***
[2024-05-20 06:16:05] None
[2024-05-20 06:16:05] exception has been put in bucket queue belonging to thread 'copytool_out'
[2024-05-20 06:16:05] setting graceful stop in 10 s since there is no point in continuing
[2024-05-20 06:16:05] 2024-05-20 10:13:42,480 | WARNING | thread 'copytool_out' received an exception from bucket: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-20 06:16:05] 2024-05-20 10:13:46,105 | WARNING | Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-20 06:16:05] 2024-05-20 10:13:46,105 | WARNING | Traceback (most recent call last):
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/util/monitoring.py", line 109, in job_monitor_tasks
[2024-05-20 06:16:05] cpuconsumptiontime = get_current_cpu_consumption_time(job.pid)
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/util/processes.py", line 571, in get_current_cpu_consumption_time
[2024-05-20 06:16:05] _, ps_cache, _ = execute("ps -eo pid,ppid -m", mute=True, timeout=60)
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 94, in execute
[2024-05-20 06:16:05] process = subprocess.Popen(exe,
[2024-05-20 06:16:05] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-05-20 06:16:05] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-05-20 06:16:05] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-05-20 06:16:05] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-05-20 06:16:05] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-20 06:16:05]
[2024-05-20 06:16:05] 2024-05-20 10:13:46,106 | WARNING | will send preliminary diagnostics (and pretend job is still running)=Exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-20 06:16:05] 2024-05-20 10:13:46,106 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-05-20 06:16:05] 2024-05-20 10:13:46,106 | INFO | job 6210348424 has state 'running' - writing heartbeat
[2024-05-20 06:16:05] 2024-05-20 10:13:46,106 | INFO | payload/TRF did not report the number of read events
[2024-05-20 06:16:05] 2024-05-20 10:13:46,116 | INFO | executing command: lscpu
[2024-05-20 06:16:05] 2024-05-20 10:13:46,137 | WARNING | exception caught: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-20 06:16:05] 2024-05-20 10:13:48,642 | INFO | monitor loop #190: job 0:6210348424 is in state 'failed'
[2024-05-20 06:16:05] 2024-05-20 10:13:48,642 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-05-20 06:16:05] 2024-05-20 10:13:51,151 | INFO | monitor loop #191: job 0:6210348424 is in state 'failed'
[2024-05-20 06:16:05] 2024-05-20 10:13:51,152 | INFO | will abort job monitoring soon since job state=failed (job is still in queue)
[2024-05-20 06:16:05] 2024-05-20 10:13:52,205 | WARNING | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-05-20 06:16:05] 2024-05-20 10:13:52,205 | INFO | found 1 job(s) in 20 queues
[2024-05-20 06:16:05] 2024-05-20 10:13:52,205 | INFO | aborting job 6210348424
[2024-05-20 06:16:05] 2024-05-20 10:13:52,214 | WARNING | job:job_monitor:received graceful stop - abort after this iteration
[2024-05-20 06:16:05] 2024-05-20 10:13:52,215 | INFO | aborting loop
[2024-05-20 06:16:05] 2024-05-20 10:13:52,297 | WARNING | pilot monitor received instruction that args.graceful_stop has been set
[2024-05-20 06:16:05] 2024-05-20 10:13:52,297 | WARNING | will wait for a maximum of 300 s for threads to finish
[2024-05-20 06:16:05] 2024-05-20 10:13:52,298 | INFO | job 6210348424 has state=failed
[2024-05-20 06:16:05] 2024-05-20 10:13:52,298 | INFO | preparing for final server update for job 6210348424 in state='failed'
[2024-05-20 06:16:05] 2024-05-20 10:13:52,310 | INFO | all data control threads have been joined
[2024-05-20 06:16:05] 2024-05-20 10:13:52,568 | INFO | all job control threads have been joined
[2024-05-20 06:16:05] 2024-05-20 10:13:53,055 | WARNING | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-05-20 06:16:05] 2024-05-20 10:13:53,220 | INFO | [job] job monitor thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:53,255 | INFO | all payload control threads have been joined
[2024-05-20 06:16:05] 2024-05-20 10:13:53,303 | WARNING | job_aborted has been set - aborting pilot monitoring
[2024-05-20 06:16:05] 2024-05-20 10:13:53,304 | INFO | [monitor] control thread has ended
[2024-05-20 06:16:05] 2024-05-20 10:13:53,317 | INFO | [data] control thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:53,574 | INFO | [job] control thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:54,170 | INFO | [data] copytool_in thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:54,237 | INFO | [job] retrieve thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:54,261 | INFO | [payload] control thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:54,277 | INFO | [payload] failed_post thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:54,281 | INFO | [job] validate thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:54,322 | INFO | [payload] run_realtimelog thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:54,399 | INFO | [job] create_data_payload thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:54,440 | INFO | [payload] validate_pre thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:54,596 | INFO | [payload] validate_post thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:57,064 | INFO | [data] queue_monitor thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:58,044 | INFO | [payload] execute_payloads thread has finished
[2024-05-20 06:16:05] 2024-05-20 10:13:59,797 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:01,809 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:03,821 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:05,833 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:07,845 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:09,857 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:11,883 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:13,895 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:15,907 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:17,918 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:19,931 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:21,943 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:23,975 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:25,987 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:27,999 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:30,011 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:32,023 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:34,054 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:36,067 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:38,079 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:40,107 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:42,118 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:44,130 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:46,142 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:48,154 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:50,168 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:52,182 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:54,196 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:56,208 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:14:58,220 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:00,232 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:02,244 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:04,255 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:06,266 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:08,278 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:10,289 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:12,307 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:14,320 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:16,332 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:18,344 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:20,356 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:22,368 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:24,380 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:26,392 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:28,414 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:30,426 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:32,438 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:34,450 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:36,462 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:38,474 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:40,485 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:42,497 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:44,511 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:46,522 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:47,537 | INFO | proceeding with final server update
[2024-05-20 06:16:05] 2024-05-20 10:15:47,538 | INFO | this job has now completed (state=failed)
[2024-05-20 06:16:05] 2024-05-20 10:15:47,538 | INFO | pilot will not update the server (heartbeat message will be written to file)
[2024-05-20 06:16:05] 2024-05-20 10:15:47,538 | INFO | job 6210348424 has failed - writing final server update
[2024-05-20 06:16:05] 2024-05-20 10:15:47,538 | WARNING | making sure that job.state is set to failed since a pilot error code is set
[2024-05-20 06:16:05] 2024-05-20 10:15:47,538 | INFO | payload/TRF did not report the number of read events
[2024-05-20 06:16:05] 2024-05-20 10:15:47,563 | INFO | executing command: lscpu
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 450, in run
[2024-05-20 06:16:05] self.target(**self.kwargs)
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2568, in queue_monitor
[2024-05-20 06:16:05] update_server(job, args)
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2617, in update_server
[2024-05-20 06:16:05] send_state(job, args, job.state, metadata=metadata)
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 420, in send_state
[2024-05-20 06:16:05] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 747, in get_data_structure
[2024-05-20 06:16:05] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-05-20 06:16:05] ec, stdout = lscpu()
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-05-20 06:16:05] ec, stdout, _ = execute(cmd)
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 94, in execute
[2024-05-20 06:16:05] process = subprocess.Popen(exe,
[2024-05-20 06:16:05] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-05-20 06:16:05] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-05-20 06:16:05] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-05-20 06:16:05] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-05-20 06:16:05] exception caught by thread run() function: (<class 'OSError'>, OSError(107, 'Transport endpoint is not connected'), <traceback object at 0x7fe282f53680>)
[2024-05-20 06:16:05] Traceback (most recent call last):
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/common/exception.py", line 450, in run
[2024-05-20 06:16:05] self.target(**self.kwargs)
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2568, in queue_monitor
[2024-05-20 06:16:05] update_server(job, args)
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 2617, in update_server
[2024-05-20 06:16:05] send_state(job, args, job.state, metadata=metadata)
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 420, in send_state
[2024-05-20 06:16:05] data = get_data_structure(job, state, args, xml=xml, metadata=metadata)
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/control/job.py", line 747, in get_data_structure
[2024-05-20 06:16:05] cpumodel = get_cpu_cores(cpumodel) # add the CPU cores if not present
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 353, in get_cpu_cores
[2024-05-20 06:16:05] ec, stdout = lscpu()
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/util/workernode.py", line 333, in lscpu
[2024-05-20 06:16:05] ec, stdout, _ = execute(cmd)
[2024-05-20 06:16:05] File "/tmp/boinchome/slots/0/pilot3/pilot/util/container.py", line 94, in execute
[2024-05-20 06:16:05] process = subprocess.Popen(exe,
[2024-05-20 06:16:05] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 951, in __init__
[2024-05-20 06:16:05] self._execute_child(args, executable, preexec_fn, close_fds,
[2024-05-20 06:16:05] File "/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.18-x86_64-centos7/lib/python3.9/subprocess.py", line 1837, in _execute_child
[2024-05-20 06:16:05] raise child_exception_type(errno_num, err_msg, err_filename)
[2024-05-20 06:16:05] OSError: [Errno 107] Transport endpoint is not connected: '/bin/bash'
[2024-05-20 06:16:05]
[2024-05-20 06:16:05] None
[2024-05-20 06:16:05] exception has been put in bucket queue belonging to thread 'queue_monitor'
[2024-05-20 06:16:05] setting graceful stop in 10 s since there is no point in continuing
[2024-05-20 06:16:05] 2024-05-20 10:15:48,533 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:50,545 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:52,557 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:54,569 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:56,581 | INFO | waiting for thread to finish: ['<_MainThread(MainThread, started 140610977621824)>', '<ExcThread(queue_monitor, started 140610157659904)>']
[2024-05-20 06:16:05] 2024-05-20 10:15:58,593 | INFO | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140610977621824)>'])
[2024-05-20 06:16:05] 2024-05-20 10:16:03,619 | INFO | all workflow threads have been joined
[2024-05-20 06:16:05] 2024-05-20 10:16:03,620 | INFO | end of generic workflow (traces error code: 0)
[2024-05-20 06:16:05] 2024-05-20 10:16:03,620 | INFO | traces error code: 0
[2024-05-20 06:16:05] 2024-05-20 10:16:03,620 | INFO | pilot has finished (exit code=0, shell exit code=0)
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-20 06:16:05] ==== pilot stdout END ====
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-20 06:16:05] ==== wrapper stdout RESUME ====
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-20 06:16:05] pilotpid: 88785
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-20 06:16:05] Pilot exit status: 0
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 949: /usr/bin/cut: Transport endpoint is not connected
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 949: xargs: command not found
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 949: /usr/bin/cat: Transport endpoint is not connected
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-20 06:16:05] pandaids:
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 501: /usr/bin/ps: Transport endpoint is not connected
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-20 06:16:05] No supervise_pilot CHILD process found
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-20 06:16:05] Test setup, not cleaning
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-20 06:16:05] ==== wrapper stdout END ====
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 10: /usr/bin/date: Transport endpoint is not connected
[2024-05-20 06:16:05] ==== wrapper stderr END ====
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 522: /usr/bin/date: Transport endpoint is not connected
[2024-05-20 06:16:05] ./runpilot2-wrapper.sh: line 15: /usr/bin/date: Transport endpoint is not connected
[2024-05-20 06:16:05] apfmon messages muted
[2024-05-20 06:16:05] *** Error codes and diagnostics ***
[2024-05-20 06:16:05] *** Listing of results directory ***
[2024-05-20 06:16:05] total 604800
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 467845 May 20 02:14 pilot3.tar.gz
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 5633 May 20 02:26 queuedata.json
[2024-05-20 06:16:05] -rwx------ 1 boincer umatlas 32251 May 20 02:28 runpilot2-wrapper.sh
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 100 May 20 05:32 wrapper_26015_x86_64-pc-linux-gnu
[2024-05-20 06:16:05] -rwxr-xr-x 1 boincer umatlas 7986 May 20 05:32 run_atlas
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 105 May 20 05:32 job.xml
[2024-05-20 06:16:05] -rw-r--r-- 2 boincer umatlas 615221109 May 20 05:32 EVNT.38776190._000066.pool.root.1
[2024-05-20 06:16:05] -rw-r--r-- 2 boincer umatlas 17537 May 20 05:32 start_atlas.sh
[2024-05-20 06:16:05] drwxrwx--x 2 boincer umatlas 4096 May 20 05:32 shared
[2024-05-20 06:16:05] -rw-r--r-- 2 boincer umatlas 480018 May 20 05:32 input.tar.gz
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 0 May 20 05:32 boinc_lockfile
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 2651 May 20 05:32 pandaJob.out
[2024-05-20 06:16:05] -rw------- 1 boincer umatlas 467 May 20 05:32 setup.sh.local
[2024-05-20 06:16:05] -rw------- 1 boincer umatlas 1013891 May 20 05:32 agis_schedconf.cvmfs.json
[2024-05-20 06:16:05] -rw------- 1 boincer umatlas 0 May 20 05:32 agis_ddmendpoints.agis.ALL.json
[2024-05-20 06:16:05] -rw------- 1 boincer umatlas 1324701 May 20 05:32 cric_ddmendpoints.json
[2024-05-20 06:16:05] drwx------ 4 boincer umatlas 4096 May 20 05:32 pilot3
[2024-05-20 06:16:05] -rw------- 1 boincer umatlas 875 May 20 06:03 heartbeat.json
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 6386 May 20 06:12 init_data.xml
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 528 May 20 06:13 boinc_task_state.xml
[2024-05-20 06:16:05] -rw------- 1 boincer umatlas 1065 May 20 06:13 memory_monitor_summary.json
[2024-05-20 06:16:05] drwxrwx--- 2 boincer umatlas 4096 May 20 06:13 PanDA_Pilot-6210348424
[2024-05-20 06:16:05] -rw------- 1 boincer umatlas 95 May 20 06:13 pilot_heartbeat.json
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 8192 May 20 06:16 boinc_mmap_file
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 25 May 20 06:16 wrapper_checkpoint.txt
[2024-05-20 06:16:05] -rw------- 1 boincer umatlas 285944 May 20 06:16 pilotlog.txt
[2024-05-20 06:16:05] -rw------- 1 boincer umatlas 309293 May 20 06:16 log.38921001._001720.job.log.1
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 428 May 20 06:16 runtime_log
[2024-05-20 06:16:05] -rw------- 1 boincer umatlas 618 May 20 06:16 YklMDmmgBT5nsSi4apGgGQJmABFKDmABFKDm4ySLDmcXVKDmoaptKm.diag
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 11688 May 20 06:16 runtime_log.err
[2024-05-20 06:16:05] -rw-r--r-- 1 boincer umatlas 27928 May 20 06:16 stderr.txt
[2024-05-20 06:16:05] No HITS result produced
[2024-05-20 06:16:05] *** Contents of shared directory: ***
[2024-05-20 06:16:05] total 601300
[2024-05-20 06:16:05] -rw-r--r-- 2 boincer umatlas 615221109 May 20 05:32 ATLAS.root_0
[2024-05-20 06:16:05] -rw-r--r-- 2 boincer umatlas 17537 May 20 05:32 start_atlas.sh
[2024-05-20 06:16:05] -rw-r--r-- 2 boincer umatlas 480018 May 20 05:32 input.tar.gz
06:16:06 (80367): run_atlas exited; CPU time 173.312264
06:16:06 (80367): called boinc_finish(0)
</stderr_txt>
<message>
upload failure: <file_xfer_error>
<file_name>YklMDmmgBT5nsSi4apGgGQJmABFKDmABFKDm4ySLDmcXVKDmoaptKm_0_r49952733_ATLAS_result</file_name>
<error_code>-161 (not found)</error_code>
</file_xfer_error>
</message>
]]>
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