Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:17:25 (1677774): wrapper (7.7.26015): starting
07:17:25 (1677774): wrapper: running run_atlas (--nthreads 4)
[2026-06-03 07:17:25] Arguments: --nthreads 4
[2026-06-03 07:17:25] Threads: 4
[2026-06-03 07:17:25] Checking for CVMFS
[2026-06-03 07:17:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-06-03 07:17:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-06-03 07:17:26] Running cvmfs_config stat atlas.cern.ch
[2026-06-03 07:17:26] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-06-03 07:17:26] 2.9.2.0 5422 9092 99036 160094 2 49 20139475 36864001 0 130560 0 6090371 99.989 307773 5551 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-06-03 07:17:26] CVMFS is ok
[2026-06-03 07:17:26] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-06-03 07:17:26] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-06-03 07:17:26] Further information can be found at the LHC@home message board.
[2026-06-03 07:17:26] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-06-03 07:17:26] Checking for apptainer binary...
[2026-06-03 07:17:26] Using apptainer found in PATH at /usr/bin/apptainer
[2026-06-03 07:17:26] Running /usr/bin/apptainer --version
[2026-06-03 07:17:26] apptainer version 1.4.1-1.1
[2026-06-03 07:17:26] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-06-03 07:17:26] thA309
[2026-06-03 07:17:26] apptainer works
[2026-06-03 07:17:26] Set ATHENA_PROC_NUMBER=4
[2026-06-03 07:17:26] Set ATHENA_CORE_NUMBER=4
[2026-06-03 07:17:26] Starting ATLAS job with PandaID=7162126020
[2026-06-03 07:17:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-06-03 08:45:51]  *** The last 200 lines of the pilot log: ***
[2026-06-03 08:45:51]  direct_access_wan=False
[2026-06-03 08:45:51]  domain=
[2026-06-03 08:45:51]  filesize=252260
[2026-06-03 08:45:51]  filetype=log
[2026-06-03 08:45:51]  guid=543a37bd-517f-4271-98a1-abff28f5f254
[2026-06-03 08:45:51]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-06-03 08:45:51]  is_altstaged=None
[2026-06-03 08:45:51]  is_tar=False
[2026-06-03 08:45:51]  lfn=log.50591392._006943.job.log.tgz.1
[2026-06-03 08:45:51]  mtime=0
[2026-06-03 08:45:51]  protocol_id=None
[2026-06-03 08:45:51]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-06-03 08:45:51]  replicas=None
[2026-06-03 08:45:51]  scope=mc23_13p6TeV
[2026-06-03 08:45:51]  status=None
[2026-06-03 08:45:51]  status_code=0
[2026-06-03 08:45:51]  storage_token=
[2026-06-03 08:45:51]  surl=/local/data/boinc/slots/0/PanDA_Pilot-7162126020/log.50591392._006943.job.log.tgz.1
[2026-06-03 08:45:51]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/7f/log.50591392._006943.job.log.tgz.1
[2026-06-03 08:45:51]  workdir=None
[2026-06-03 08:45:51] ]
[2026-06-03 08:45:51] 2026-06-03 06:44:45,816 | INFO     | transferring file log.50591392._006943.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-7162126020/log.50591392._006943.job.log.tgz.1 to /local/data/boinc/
[2026-06-03 08:45:51] 2026-06-03 06:44:45,816 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-7162126020/log.50591392._006943.job.log.tgz.1 /local/data/boinc/slots/0/log.50591392._0069
[2026-06-03 08:45:51] 2026-06-03 06:44:45,836 | INFO     | adding to output.list: log.50591392._006943.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/71/7f/log.50591392._006943.job.log.tg
[2026-06-03 08:45:51] 2026-06-03 06:44:45,837 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-06-03 08:45:51] 2026-06-03 06:44:45,837 | INFO     | summary of transferred files:
[2026-06-03 08:45:51] 2026-06-03 06:44:45,837 | INFO     |  -- lfn=log.50591392._006943.job.log.tgz.1, status_code=0, status=transferred
[2026-06-03 08:45:51] 2026-06-03 06:44:45,837 | INFO     | stage-out finished correctly
[2026-06-03 08:45:51] 2026-06-03 06:44:45,896 | WARNING  | process 1686391 can no longer be monitored (due to stat problems) - aborting
[2026-06-03 08:45:51] 2026-06-03 06:44:45,896 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7162126020/memory_monitor_summary.json (trf name=prmon)
[2026-06-03 08:45:51] 2026-06-03 06:44:45,930 | INFO     | number of running child processes to parent process 1686391: 1
[2026-06-03 08:45:51] 2026-06-03 06:44:45,930 | INFO     | maximum number of monitored processes: 6
[2026-06-03 08:45:51] 2026-06-03 06:44:45,982 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-06-03 08:45:51] 2026-06-03 06:44:46,023 | INFO     | job 7162126020 has state=finished
[2026-06-03 08:45:51] 2026-06-03 06:44:46,023 | INFO     | preparing for final server update for job 7162126020 in state='finished'
[2026-06-03 08:45:51] 2026-06-03 06:44:46,023 | INFO     | reading metadata from: /local/data/boinc/slots/0/PanDA_Pilot-7162126020/jobReport.json
[2026-06-03 08:45:51] 2026-06-03 06:44:46,024 | INFO     | added worker_node to metadata from /local/data/boinc/slots/0/workernode_map.json
[2026-06-03 08:45:51] 2026-06-03 06:44:46,024 | INFO     | this job has now completed (state=finished)
[2026-06-03 08:45:51] 2026-06-03 06:44:46,024 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-06-03 08:45:51] 2026-06-03 06:44:46,024 | INFO     | log transfer has been attempted: DONE
[2026-06-03 08:45:51] 2026-06-03 06:44:46,024 | INFO     | job 7162126020 has finished - writing final server update
[2026-06-03 08:45:51] 2026-06-03 06:44:46,024 | INFO     | total number of processed events: 400 (read)
[2026-06-03 08:45:51] 2026-06-03 06:44:46,026 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7162126020/memory_monitor_summary.json (trf name=prmon)
[2026-06-03 08:45:51] 2026-06-03 06:44:46,026 | INFO     | extracted standard info from prmon json
[2026-06-03 08:45:51] 2026-06-03 06:44:46,026 | INFO     | extracted standard memory fields from prmon json
[2026-06-03 08:45:51] 2026-06-03 06:44:46,026 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-06-03 08:45:51] 2026-06-03 06:44:46,026 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-06-03 08:45:51] 2026-06-03 06:44:46,027 | INFO     | fitting pss+swap vs Time
[2026-06-03 08:45:51] 2026-06-03 06:44:46,027 | INFO     | sum of square deviations: 152858680.0
[2026-06-03 08:45:51] 2026-06-03 06:44:46,027 | INFO     | sum of deviations: -12297072777.0
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | mean x (centered): 0.0
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | mean y: 2628527.670886076
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | intersect: 2628527.670886076
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | chi2: 0.43435351518488463
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | current memory leak: -80.45 B/s (using 79 data points, chi2=0.43)
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | could have reported an average CPU frequency of 3116 MHz (6 samples)
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | ..............................
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | . Timing measurements:
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | . get job = 0 s
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | . initial setup = 4 s
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | . payload setup = 6 s
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | . stage-in = 0 s
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | . payload execution = 5204 s
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | . stage-out = 0 s
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | . log creation = 0 s
[2026-06-03 08:45:51] 2026-06-03 06:44:46,028 | INFO     | ..............................
[2026-06-03 08:45:51] 2026-06-03 06:44:46,066 | INFO     | 
[2026-06-03 08:45:51] 2026-06-03 06:44:46,066 | INFO     | job summary report
[2026-06-03 08:45:51] 2026-06-03 06:44:46,066 | INFO     | --------------------------------------------------
[2026-06-03 08:45:51] 2026-06-03 06:44:46,066 | INFO     | PanDA job id: 7162126020
[2026-06-03 08:45:51] 2026-06-03 06:44:46,066 | INFO     | task id: 50591392
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | errors: (none)
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | status: LOG_TRANSFER = DONE 
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | pilot state: finished 
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | transexitcode: 0
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | exeerrorcode: 0
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | exeerrordiag: 
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | exitcode: 0
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | exitmsg: OK
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | cpuconsumptiontime: 18994 s
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | nevents: 400
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | neventsw: 0
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | pid: 1686391
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | pgrp: 1686391
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | corecount: 4
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | event service: False
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | sizes: {0: 2262505, 1: 2264079, 11: 2264107, 5214: 2290725, 5215: 2299923}
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | --------------------------------------------------
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | 
[2026-06-03 08:45:51] 2026-06-03 06:44:46,067 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue jobs had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue payloads had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue data_in had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue data_out had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue completed_jobids has 1 job(s)
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | queue messages had 0 job(s) [purged]
[2026-06-03 08:45:51] 2026-06-03 06:44:46,088 | INFO     | job 7162126020 has completed (purged errors)
[2026-06-03 08:45:51] 2026-06-03 06:44:46,089 | INFO     | overall cleanup function is called
[2026-06-03 08:45:51] 2026-06-03 06:44:47,095 | INFO     | --- collectZombieJob: --- 10, [1686391]
[2026-06-03 08:45:51] 2026-06-03 06:44:47,096 | INFO     | zombie collector waiting for pid 1686391
[2026-06-03 08:45:51] 2026-06-03 06:44:47,096 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-06-03 08:45:51] 2026-06-03 06:44:47,096 | INFO     | collected zombie processes
[2026-06-03 08:45:51] 2026-06-03 06:44:47,096 | INFO     | will attempt to kill all subprocesses of pid=1686391
[2026-06-03 08:45:51] 2026-06-03 06:44:47,133 | INFO     | process IDs to be killed: [1686391] (in reverse order)
[2026-06-03 08:45:51] 2026-06-03 06:44:47,170 | WARNING  | found no corresponding commands to process id(s)
[2026-06-03 08:45:51] 2026-06-03 06:44:47,170 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-06-03 08:45:51] 2026-06-03 06:44:47,172 | INFO     | did not find any defunct processes belonging to 1686391
[2026-06-03 08:45:51] 2026-06-03 06:44:47,173 | INFO     | did not find any defunct processes belonging to 1686391
[2026-06-03 08:45:51] 2026-06-03 06:44:47,174 | INFO     | Ready for new job
[2026-06-03 08:45:51] 2026-06-03 06:44:47,174 | INFO     | ***************************************
[2026-06-03 08:45:51] 2026-06-03 06:44:47,174 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-06-03 08:45:51] 2026-06-03 06:44:47,174 | INFO     | ***************************************
[2026-06-03 08:45:51] 2026-06-03 06:44:47,174 | INFO     | 
[2026-06-03 08:45:51] 2026-06-03 06:44:47,175 | INFO     | architecture information:
[2026-06-03 08:45:51] 2026-06-03 06:44:47,175 | INFO     | executing command: cat /etc/os-release
[2026-06-03 08:45:51] 2026-06-03 06:44:47,190 | INFO     | cat /etc/os-release:
[2026-06-03 08:45:51] NAME="CentOS Linux"
[2026-06-03 08:45:51] VERSION="7 (Core)"
[2026-06-03 08:45:51] ID="centos"
[2026-06-03 08:45:51] ID_LIKE="rhel fedora"
[2026-06-03 08:45:51] VERSION_ID="7"
[2026-06-03 08:45:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-06-03 08:45:51] ANSI_COLOR="0;31"
[2026-06-03 08:45:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-06-03 08:45:51] HOME_URL="https://www.centos.org/"
[2026-06-03 08:45:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-06-03 08:45:51] 
[2026-06-03 08:45:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-06-03 08:45:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-06-03 08:45:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-06-03 08:45:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-06-03 08:45:51] 
[2026-06-03 08:45:51] 2026-06-03 06:44:47,191 | INFO     | ***************************************
[2026-06-03 08:45:51] 2026-06-03 06:44:47,694 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-06-03 08:45:51] 2026-06-03 06:44:47,713 | INFO     | sufficient remaining disk space (240287481856 B)
[2026-06-03 08:45:51] 2026-06-03 06:44:47,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-06-03 08:45:51] 2026-06-03 06:44:47,713 | INFO     | current server update state: UPDATING_FINAL
[2026-06-03 08:45:51] 2026-06-03 06:44:47,713 | INFO     | update_server=False
[2026-06-03 08:45:51] 2026-06-03 06:44:47,713 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-06-03 08:45:51] 2026-06-03 06:44:47,713 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-06-03 08:45:51] 2026-06-03 06:44:47,713 | INFO     | aborting loop
[2026-06-03 08:45:51] 2026-06-03 06:44:47,714 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-06-03 08:45:51] 2026-06-03 06:44:47,714 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-06-03 08:45:51] 2026-06-03 06:44:47,750 | INFO     | all data control threads have been joined
[2026-06-03 08:45:51] 2026-06-03 06:44:48,279 | INFO     | all payload control threads have been joined
[2026-06-03 08:45:51] 2026-06-03 06:44:48,380 | INFO     | all job control threads have been joined
[2026-06-03 08:45:51] 2026-06-03 06:44:48,717 | INFO     | [job] job monitor thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:48,719 | INFO     | [job] retrieve thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:48,719 | INFO     | [job] queue monitor thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:48,756 | INFO     | [data] control thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:48,882 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-06-03 08:45:51] 2026-06-03 06:44:49,126 | INFO     | [payload] failed_post thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:49,248 | INFO     | job.realtimelogging is not enabled
[2026-06-03 08:45:51] 2026-06-03 06:44:49,285 | INFO     | [payload] control thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:49,386 | INFO     | [job] control thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:49,398 | INFO     | [job] validate thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:49,440 | INFO     | [payload] execute_payloads thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:49,506 | INFO     | [job] create_data_payload thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:49,581 | INFO     | [payload] validate_pre thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:49,677 | INFO     | [payload] validate_post thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:49,710 | INFO     | [data] copytool_in thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:50,254 | INFO     | [payload] run_realtimelog thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:50,888 | INFO     | [data] copytool_out thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:44:51,720 | INFO     | [data] queue_monitor thread has finished
[2026-06-03 08:45:51] 2026-06-03 06:45:18,481 | INFO     | PID=1681886 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-06-03 08:45:51] 2026-06-03 06:45:18,481 | INFO     | found 0 job(s) in 20 queues
[2026-06-03 08:45:51] 2026-06-03 06:45:18,482 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-06-03 08:45:51] 2026-06-03 06:45:18,482 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-06-03 08:45:51] 2026-06-03 06:45:46,629 | INFO     | [monitor] cgroup control has ended
[2026-06-03 08:45:51] 2026-06-03 06:45:46,660 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139925758146368)>', '<ExcThread(monitor, started 139924439287552)>']
[2026-06-03 08:45:51] 2026-06-03 06:45:47,635 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-06-03 08:45:51] 2026-06-03 06:45:47,635 | INFO     | [monitor] control thread has ended
[2026-06-03 08:45:51] 2026-06-03 06:45:51,677 | INFO     | all workflow threads have been joined
[2026-06-03 08:45:51] 2026-06-03 06:45:51,678 | INFO     | end of generic workflow (traces error code: 0)
[2026-06-03 08:45:51] 2026-06-03 06:45:51,679 | INFO     | traces error code: 0
[2026-06-03 08:45:51] 2026-06-03 06:45:51,679 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-06-03 08:45:51] 2026-06-03 06:45:51,760 [wrapper] ==== pilot stdout END ====
[2026-06-03 08:45:51] 2026-06-03 06:45:51,765 [wrapper] ==== wrapper stdout RESUME ====
[2026-06-03 08:45:51] 2026-06-03 06:45:51,769 [wrapper] pilotpid: 1681886
[2026-06-03 08:45:51] 2026-06-03 06:45:51,773 [wrapper] Pilot exit status: 0
[2026-06-03 08:45:51] 2026-06-03 06:45:51,785 [wrapper] pandaids: 7162126020
[2026-06-03 08:45:51] 2026-06-03 06:45:51,809 [wrapper] cleanup supervisor_pilot 1692236 1681887
[2026-06-03 08:45:51] 2026-06-03 06:45:51,814 [wrapper] Test setup, not cleaning
[2026-06-03 08:45:51] 2026-06-03 06:45:51,818 [wrapper] apfmon messages muted
[2026-06-03 08:45:51] 2026-06-03 06:45:51,822 [wrapper] ==== wrapper stdout END ====
[2026-06-03 08:45:51] 2026-06-03 06:45:51,826 [wrapper] ==== wrapper stderr END ====
[2026-06-03 08:45:51]  *** Error codes and diagnostics ***
[2026-06-03 08:45:51]     "exeErrorCode": 0,
[2026-06-03 08:45:51]     "pilotErrorCode": 0,
[2026-06-03 08:45:51]  *** Listing of results directory ***
[2026-06-03 08:45:51] total 505216
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc      5631 Jun  2 18:59 queuedata.json
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc    683926 Jun  2 18:59 pilot3.tar.gz
[2026-06-03 08:45:51] -rwx------ 1 boinc boinc     36281 Jun  2 18:59 runpilot2-wrapper.sh
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc       100 Jun  3 07:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-06-03 08:45:51] -rwxr-xr-x 1 boinc boinc      7986 Jun  3 07:17 run_atlas
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc       105 Jun  3 07:17 job.xml
[2026-06-03 08:45:51] -rw-r--r-- 2 boinc boinc 293540934 Jun  3 07:17 EVNT.50469892._000272.pool.root.1
[2026-06-03 08:45:51] -rw-r--r-- 2 boinc boinc    697429 Jun  3 07:17 input.tar.gz
[2026-06-03 08:45:51] -rw-r--r-- 2 boinc boinc     15667 Jun  3 07:17 start_atlas.sh
[2026-06-03 08:45:51] drwxrwx--x 2 boinc boinc      4096 Jun  3 07:17 shared
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc         0 Jun  3 07:17 boinc_setup_complete
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc      6291 Jun  3 07:17 init_data.xml
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc         0 Jun  3 07:17 boinc_lockfile
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc      2551 Jun  3 07:17 pandaJob.out
[2026-06-03 08:45:51] -rw------- 1 boinc boinc    993926 Jun  3 07:17 agis_schedconf.cvmfs.json
[2026-06-03 08:45:51] -rw------- 1 boinc boinc   1501037 Jun  3 07:17 agis_ddmendpoints.agis.ALL.json
[2026-06-03 08:45:51] -rw------- 1 boinc boinc       421 Jun  3 07:17 workernode_map.json
[2026-06-03 08:45:51] drwx------ 5 boinc boinc      4096 Jun  3 07:17 pilot3
[2026-06-03 08:45:51] -rw------- 1 boinc boinc 218156834 Jun  3 08:44 HITS.50591392._006943.pool.root.1
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc       487 Jun  3 08:44 boinc_task_state.xml
[2026-06-03 08:45:51] -rw------- 1 boinc boinc      1018 Jun  3 08:44 memory_monitor_summary.json
[2026-06-03 08:45:51] -rw------- 1 boinc boinc    252260 Jun  3 08:44 log.50591392._006943.job.log.tgz.1
[2026-06-03 08:45:51] -rw------- 1 boinc boinc      6322 Jun  3 08:44 heartbeat_new.json
[2026-06-03 08:45:51] -rw------- 1 boinc boinc      6213 Jun  3 08:44 heartbeat.json
[2026-06-03 08:45:51] -rw------- 1 boinc boinc        95 Jun  3 08:45 pilot_heartbeat.json
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc      8192 Jun  3 08:45 boinc_mmap_file
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc        27 Jun  3 08:45 wrapper_checkpoint.txt
[2026-06-03 08:45:51] -rw------- 1 boinc boinc      4823 Jun  3 08:45 pilotlog.txt
[2026-06-03 08:45:51] -rw------- 1 boinc boinc    508886 Jun  3 08:45 log.50591392._006943.job.log.1
[2026-06-03 08:45:51] -rw------- 1 boinc boinc       357 Jun  3 08:45 output.list
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc       410 Jun  3 08:45 runtime_log
[2026-06-03 08:45:51] -rw------- 1 boinc boinc    778240 Jun  3 08:45 result.tar.gz
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc      8519 Jun  3 08:45 runtime_log.err
[2026-06-03 08:45:51] -rw------- 1 boinc boinc       657 Jun  3 08:45 0c0930369c2b.diag
[2026-06-03 08:45:51] -rw-r--r-- 1 boinc boinc     20970 Jun  3 08:45 stderr.txt
[2026-06-03 08:45:51] HITS file was successfully produced:
[2026-06-03 08:45:51] -rw------- 1 boinc boinc 218156834 Jun  3 08:44 shared/HITS.pool.root.1
[2026-06-03 08:45:51]  *** Contents of shared directory: ***
[2026-06-03 08:45:51] total 501176
[2026-06-03 08:45:51] -rw-r--r-- 2 boinc boinc 293540934 Jun  3 07:17 ATLAS.root_0
[2026-06-03 08:45:51] -rw-r--r-- 2 boinc boinc    697429 Jun  3 07:17 input.tar.gz
[2026-06-03 08:45:51] -rw-r--r-- 2 boinc boinc     15667 Jun  3 07:17 start_atlas.sh
[2026-06-03 08:45:51] -rw------- 1 boinc boinc 218156834 Jun  3 08:44 HITS.pool.root.1
[2026-06-03 08:45:51] -rw------- 1 boinc boinc    778240 Jun  3 08:45 result.tar.gz
08:45:53 (1677774): run_atlas exited; CPU time 19014.642040
08:45:53 (1677774): called boinc_finish(0)

</stderr_txt>
]]>

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