Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
13:41:42 (27419): wrapper (7.7.26015): starting
13:41:42 (27419): wrapper: running run_atlas (--nthreads 8)
[2026-05-31 13:41:42] Arguments: --nthreads 8
[2026-05-31 13:41:42] Threads: 8
[2026-05-31 13:41:42] Checking for CVMFS
[2026-05-31 13:41:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-31 13:41:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-31 13:41:43] Running cvmfs_config stat atlas.cern.ch
[2026-05-31 13:41:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-31 13:41:43] 2.11.0.0 4411 27536 62532 159995 2 49 2210867 4096001 0 130560 0 3346677 99.592 1921437 763 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-05-31 13:41:43] CVMFS is ok
[2026-05-31 13:41:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-31 13:41:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-31 13:41:43] Further information can be found at the LHC@home message board.
[2026-05-31 13:41:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-31 13:41:43] Checking for apptainer binary...
[2026-05-31 13:41:43] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-05-31 13:41:43] apptainer is not installed, using version from CVMFS
[2026-05-31 13:41:43] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-31 13:41:43] WARNING: Environment variable TMPDIR already has value [/tmp/job_11687007/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node227
[2026-05-31 13:41:43] apptainer works
[2026-05-31 13:41:43] Set ATHENA_PROC_NUMBER=8
[2026-05-31 13:41:43] Set ATHENA_CORE_NUMBER=8
[2026-05-31 13:41:43] Starting ATLAS job with PandaID=7160475665
[2026-05-31 13:41:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11687007/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-31 14:19:10]  *** The last 200 lines of the pilot log: ***
[2026-05-31 14:19:10]  is_altstaged=None
[2026-05-31 14:19:10]  is_tar=False
[2026-05-31 14:19:10]  lfn=log.50588407._000968.job.log.tgz.1
[2026-05-31 14:19:10]  mtime=0
[2026-05-31 14:19:10]  protocol_id=None
[2026-05-31 14:19:10]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-31 14:19:10]  replicas=None
[2026-05-31 14:19:10]  scope=mc23_13p6TeV
[2026-05-31 14:19:10]  status=None
[2026-05-31 14:19:10]  status_code=0
[2026-05-31 14:19:10]  storage_token=
[2026-05-31 14:19:10]  surl=/tmp/job_11687007/atlas/pilot/slots/0/PanDA_Pilot-7160475665/log.50588407._000968.job.log.tgz.1
[2026-05-31 14:19:10]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/58/log.50588407._000968.job.log.tgz.1
[2026-05-31 14:19:10]  workdir=None
[2026-05-31 14:19:10] ]
[2026-05-31 14:19:10] 2026-05-31 12:18:34,442 | INFO     | transferring file log.50588407._000968.job.log.tgz.1 from /tmp/job_11687007/atlas/pilot/slots/0/PanDA_Pilot-7160475665/log.50588407._000968.job.log.tgz.1 to /tmp/j
[2026-05-31 14:19:10] 2026-05-31 12:18:34,442 | INFO     | executing command: /usr/bin/env mv /tmp/job_11687007/atlas/pilot/slots/0/PanDA_Pilot-7160475665/log.50588407._000968.job.log.tgz.1 /tmp/job_11687007/atlas/pilot/sl
[2026-05-31 14:19:10] 2026-05-31 12:18:34,450 | INFO     | adding to output.list: log.50588407._000968.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/b7/58/log.50588407._000968.job.log.tg
[2026-05-31 14:19:10] 2026-05-31 12:18:34,450 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-31 14:19:10] 2026-05-31 12:18:34,450 | INFO     | summary of transferred files:
[2026-05-31 14:19:10] 2026-05-31 12:18:34,450 | INFO     |  -- lfn=log.50588407._000968.job.log.tgz.1, status_code=0, status=transferred
[2026-05-31 14:19:10] 2026-05-31 12:18:34,450 | INFO     | stage-out finished correctly
[2026-05-31 14:19:10] 2026-05-31 12:18:35,175 | WARNING  | process 5965 can no longer be monitored (due to stat problems) - aborting
[2026-05-31 14:19:10] 2026-05-31 12:18:35,176 | INFO     | using path: /tmp/job_11687007/atlas/pilot/slots/0/PanDA_Pilot-7160475665/memory_monitor_summary.json (trf name=prmon)
[2026-05-31 14:19:10] 2026-05-31 12:18:35,249 | INFO     | number of running child processes to parent process 5965: 1
[2026-05-31 14:19:10] 2026-05-31 12:18:35,249 | INFO     | maximum number of monitored processes: 6
[2026-05-31 14:19:10] 2026-05-31 12:18:37,259 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-31 14:19:10] 2026-05-31 12:18:37,752 | INFO     | monitor loop #169: job 0:7160475665 is in state 'finished'
[2026-05-31 14:19:10] 2026-05-31 12:18:37,752 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-31 14:19:10] 2026-05-31 12:18:38,369 | INFO     | job 7160475665 has state=finished
[2026-05-31 14:19:10] 2026-05-31 12:18:38,369 | INFO     | preparing for final server update for job 7160475665 in state='finished'
[2026-05-31 14:19:10] 2026-05-31 12:18:38,369 | INFO     | reading metadata from: /tmp/job_11687007/atlas/pilot/slots/0/PanDA_Pilot-7160475665/jobReport.json
[2026-05-31 14:19:10] 2026-05-31 12:18:38,370 | INFO     | added worker_node to metadata from /tmp/job_11687007/atlas/pilot/slots/0/workernode_map.json
[2026-05-31 14:19:10] 2026-05-31 12:18:38,370 | INFO     | this job has now completed (state=finished)
[2026-05-31 14:19:10] 2026-05-31 12:18:38,370 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-31 14:19:10] 2026-05-31 12:18:38,370 | INFO     | log transfer has been attempted: DONE
[2026-05-31 14:19:10] 2026-05-31 12:18:38,370 | INFO     | job 7160475665 has finished - writing final server update
[2026-05-31 14:19:10] 2026-05-31 12:18:38,370 | INFO     | total number of processed events: 400 (read)
[2026-05-31 14:19:10] 2026-05-31 12:18:38,388 | INFO     | using path: /tmp/job_11687007/atlas/pilot/slots/0/PanDA_Pilot-7160475665/memory_monitor_summary.json (trf name=prmon)
[2026-05-31 14:19:10] 2026-05-31 12:18:38,389 | INFO     | extracted standard info from prmon json
[2026-05-31 14:19:10] 2026-05-31 12:18:38,389 | INFO     | extracted standard memory fields from prmon json
[2026-05-31 14:19:10] 2026-05-31 12:18:38,389 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-31 14:19:10] 2026-05-31 12:18:38,389 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-31 14:19:10] 2026-05-31 12:18:38,389 | INFO     | fitting pss+swap vs Time
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | sum of square deviations: 7553630.0
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | sum of deviations: -1829701588.0000002
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | mean x (centered): 0.0
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | mean y: 2709299.896551724
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | intersect: 2709299.896551724
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | chi2: 0.031246094362580357
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | current memory leak: -242.23 B/s (using 29 data points, chi2=0.03)
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | could have reported an average CPU frequency of 2364 MHz (5 samples)
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | ..............................
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | . Timing measurements:
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | . get job = 0 s
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | . initial setup = 2 s
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | . payload setup = 3 s
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | . stage-in = 0 s
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | . payload execution = 2184 s
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | . stage-out = 0 s
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | . log creation = 0 s
[2026-05-31 14:19:10] 2026-05-31 12:18:38,390 | INFO     | ..............................
[2026-05-31 14:19:10] 2026-05-31 12:18:38,437 | INFO     | 
[2026-05-31 14:19:10] 2026-05-31 12:18:38,437 | INFO     | job summary report
[2026-05-31 14:19:10] 2026-05-31 12:18:38,437 | INFO     | --------------------------------------------------
[2026-05-31 14:19:10] 2026-05-31 12:18:38,437 | INFO     | PanDA job id: 7160475665
[2026-05-31 14:19:10] 2026-05-31 12:18:38,437 | INFO     | task id: 50588407
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | errors: (none)
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | pilot state: finished 
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | transexitcode: 0
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | exeerrorcode: 0
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | exeerrordiag: 
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | exitcode: 0
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | exitmsg: OK
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | cpuconsumptiontime: 15886 s
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | nevents: 400
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | neventsw: 0
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | pid: 5965
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | pgrp: 5965
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | corecount: 8
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | event service: False
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | sizes: {0: 2267613, 11: 2267613, 2190: 2292769, 2191: 2292768, 2192: 2301852, 2195: 2301908, 2196: 2302262}
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | --------------------------------------------------
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | 
[2026-05-31 14:19:10] 2026-05-31 12:18:38,438 | INFO     | executing command: ls -lF /tmp/job_11687007/atlas/pilot/slots/0
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-31 14:19:10] 2026-05-31 12:18:38,448 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,449 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-31 14:19:10] 2026-05-31 12:18:38,449 | INFO     | job 7160475665 has completed (purged errors)
[2026-05-31 14:19:10] 2026-05-31 12:18:38,449 | INFO     | overall cleanup function is called
[2026-05-31 14:19:10] 2026-05-31 12:18:39,455 | INFO     | --- collectZombieJob: --- 10, [5965]
[2026-05-31 14:19:10] 2026-05-31 12:18:39,455 | INFO     | zombie collector waiting for pid 5965
[2026-05-31 14:19:10] 2026-05-31 12:18:39,455 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-31 14:19:10] 2026-05-31 12:18:39,455 | INFO     | collected zombie processes
[2026-05-31 14:19:10] 2026-05-31 12:18:39,455 | INFO     | will attempt to kill all subprocesses of pid=5965
[2026-05-31 14:19:10] 2026-05-31 12:18:39,532 | INFO     | process IDs to be killed: [5965] (in reverse order)
[2026-05-31 14:19:10] 2026-05-31 12:18:39,566 | WARNING  | found no corresponding commands to process id(s)
[2026-05-31 14:19:10] 2026-05-31 12:18:39,566 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-31 14:19:10] 2026-05-31 12:18:39,570 | INFO     | did not find any defunct processes belonging to 5965
[2026-05-31 14:19:10] 2026-05-31 12:18:39,573 | INFO     | did not find any defunct processes belonging to 5965
[2026-05-31 14:19:10] 2026-05-31 12:18:39,573 | INFO     | Ready for new job
[2026-05-31 14:19:10] 2026-05-31 12:18:39,573 | INFO     | ***************************************
[2026-05-31 14:19:10] 2026-05-31 12:18:39,573 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-31 14:19:10] 2026-05-31 12:18:39,573 | INFO     | ***************************************
[2026-05-31 14:19:10] 2026-05-31 12:18:39,573 | INFO     | 
[2026-05-31 14:19:10] 2026-05-31 12:18:39,588 | INFO     | architecture information:
[2026-05-31 14:19:10] 2026-05-31 12:18:39,588 | INFO     | executing command: cat /etc/os-release
[2026-05-31 14:19:10] 2026-05-31 12:18:39,594 | INFO     | cat /etc/os-release:
[2026-05-31 14:19:10] NAME="CentOS Linux"
[2026-05-31 14:19:10] VERSION="7 (Core)"
[2026-05-31 14:19:10] ID="centos"
[2026-05-31 14:19:10] ID_LIKE="rhel fedora"
[2026-05-31 14:19:10] VERSION_ID="7"
[2026-05-31 14:19:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-31 14:19:10] ANSI_COLOR="0;31"
[2026-05-31 14:19:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-31 14:19:10] HOME_URL="https://www.centos.org/"
[2026-05-31 14:19:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-31 14:19:10] 
[2026-05-31 14:19:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-31 14:19:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-31 14:19:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-31 14:19:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-31 14:19:10] 
[2026-05-31 14:19:10] 2026-05-31 12:18:39,594 | INFO     | ***************************************
[2026-05-31 14:19:10] 2026-05-31 12:18:40,097 | INFO     | executing command: df -mP /tmp/job_11687007/atlas/pilot/slots/0
[2026-05-31 14:19:10] 2026-05-31 12:18:40,103 | INFO     | sufficient remaining disk space (227513729024 B)
[2026-05-31 14:19:10] 2026-05-31 12:18:40,103 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-31 14:19:10] 2026-05-31 12:18:40,103 | INFO     | current server update state: UPDATING_FINAL
[2026-05-31 14:19:10] 2026-05-31 12:18:40,103 | INFO     | update_server=False
[2026-05-31 14:19:10] 2026-05-31 12:18:40,103 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-31 14:19:10] 2026-05-31 12:18:40,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-31 14:19:10] 2026-05-31 12:18:40,104 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-31 14:19:10] 2026-05-31 12:18:40,116 | INFO     | all payload control threads have been joined
[2026-05-31 14:19:10] 2026-05-31 12:18:40,255 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-31 14:19:10] 2026-05-31 12:18:40,255 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-31 14:19:10] 2026-05-31 12:18:40,255 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-31 14:19:10] 2026-05-31 12:18:40,255 | INFO     | will abort loop
[2026-05-31 14:19:10] 2026-05-31 12:18:40,437 | INFO     | all job control threads have been joined
[2026-05-31 14:19:10] 2026-05-31 12:18:41,036 | INFO     | all data control threads have been joined
[2026-05-31 14:19:10] 2026-05-31 12:18:41,109 | INFO     | [job] retrieve thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:41,109 | INFO     | [job] queue monitor thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:41,121 | INFO     | [payload] control thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:41,260 | INFO     | [job] job monitor thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:41,442 | INFO     | [job] control thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:41,625 | INFO     | [payload] validate_post thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:41,949 | INFO     | [job] validate thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:42,041 | INFO     | [data] control thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:42,109 | INFO     | [data] copytool_out thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:42,162 | INFO     | [job] create_data_payload thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:42,192 | INFO     | [payload] validate_pre thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:42,313 | INFO     | [data] copytool_in thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:42,328 | INFO     | [payload] failed_post thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:42,575 | INFO     | [payload] execute_payloads thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:43,310 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-31 14:19:10] 2026-05-31 12:18:47,315 | INFO     | [data] queue_monitor thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:50,221 | INFO     | job.realtimelogging is not enabled
[2026-05-31 14:19:10] 2026-05-31 12:18:51,227 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-31 14:19:10] 2026-05-31 12:18:53,929 | INFO     | [monitor] cgroup control has ended
[2026-05-31 14:19:10] 2026-05-31 12:18:55,654 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067565312)>']
[2026-05-31 14:19:10] 2026-05-31 12:19:00,679 | INFO     | all workflow threads have been joined
[2026-05-31 14:19:10] 2026-05-31 12:19:00,679 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-31 14:19:10] 2026-05-31 12:19:00,679 | INFO     | traces error code: 0
[2026-05-31 14:19:10] 2026-05-31 12:19:00,680 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-31 14:19:10] 2026-05-31 12:19:10,726 | INFO     | PID=32138 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-31 14:19:10] 2026-05-31 12:19:10,726 | INFO     | .. there are 4 such processes running
[2026-05-31 14:19:10] 2026-05-31 12:19:10,726 | INFO     | found 0 job(s) in 20 queues
[2026-05-31 14:19:10] 2026-05-31 12:19:10,726 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-31 14:19:10] 2026-05-31 12:19:10,726 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-31 14:19:10] 2026-05-31 12:19:10,726 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-31 14:19:10] 2026-05-31 12:19:10,726 | CRITICAL | thread 'MainThread' is not alive
[2026-05-31 14:19:10] 2026-05-31 12:19:10,726 | INFO     | [monitor] control thread has ended
[2026-05-31 14:19:10] 2026-05-31 12:19:10,783 [wrapper] ==== pilot stdout END ====
[2026-05-31 14:19:10] 2026-05-31 12:19:10,784 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-31 14:19:10] 2026-05-31 12:19:10,785 [wrapper] pilotpid: 32138
[2026-05-31 14:19:10] 2026-05-31 12:19:10,787 [wrapper] Pilot exit status: 0
[2026-05-31 14:19:10] 2026-05-31 12:19:10,791 [wrapper] pandaids: 7160475665
[2026-05-31 14:19:10] 2026-05-31 12:19:10,814 [wrapper] cleanup supervisor_pilot   541 32139
[2026-05-31 14:19:10] 2026-05-31 12:19:10,815 [wrapper] Test setup, not cleaning
[2026-05-31 14:19:10] 2026-05-31 12:19:10,816 [wrapper] apfmon messages muted
[2026-05-31 14:19:10] 2026-05-31 12:19:10,817 [wrapper] ==== wrapper stdout END ====
[2026-05-31 14:19:10] 2026-05-31 12:19:10,818 [wrapper] ==== wrapper stderr END ====
[2026-05-31 14:19:10]  *** Error codes and diagnostics ***
[2026-05-31 14:19:10]     "exeErrorCode": 0,
[2026-05-31 14:19:10]     "pilotErrorCode": 0,
[2026-05-31 14:19:10]  *** Listing of results directory ***
[2026-05-31 14:19:10] total 346184
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user    683926 May 31 08:42 pilot3.tar.gz
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user      5631 May 31 08:46 queuedata.json
[2026-05-31 14:19:10] -rwx------ 1 mf493845 unix-user     36281 May 31 08:47 runpilot2-wrapper.sh
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user       100 May 31 12:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-31 14:19:10] -rwxr-xr-x 1 mf493845 unix-user      7986 May 31 12:51 run_atlas
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user       105 May 31 12:51 job.xml
[2026-05-31 14:19:10] -rw-r--r-- 2 mf493845 unix-user     15667 May 31 13:41 start_atlas.sh
[2026-05-31 14:19:10] drwxrwx--x 2 mf493845 unix-user       100 May 31 13:41 shared
[2026-05-31 14:19:10] -rw-r--r-- 2 mf493845 unix-user    697395 May 31 13:41 input.tar.gz
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user      6307 May 31 13:41 init_data.xml
[2026-05-31 14:19:10] -rw-r--r-- 2 mf493845 unix-user 196606217 May 31 13:41 EVNT.50588404._000039.pool.root.1
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user         0 May 31 13:41 boinc_setup_complete
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user      8192 May 31 13:41 boinc_mmap_file
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user         0 May 31 13:41 boinc_lockfile
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user      2461 May 31 13:41 pandaJob.out
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user    995637 May 31 13:41 agis_schedconf.cvmfs.json
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user   1502789 May 31 13:41 agis_ddmendpoints.agis.ALL.json
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user       412 May 31 13:41 workernode_map.json
[2026-05-31 14:19:10] drwx------ 5 mf493845 unix-user       520 May 31 13:41 pilot3
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user 152720076 May 31 14:18 HITS.50588407._000968.pool.root.1
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user        95 May 31 14:18 pilot_heartbeat.json
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user      1011 May 31 14:18 memory_monitor_summary.json
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user    281028 May 31 14:18 log.50588407._000968.job.log.tgz.1
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user      6318 May 31 14:18 heartbeat_new.json
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user      6208 May 31 14:18 heartbeat.json
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user       890 May 31 14:19 pilotlog.txt
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user    256850 May 31 14:19 log.50588407._000968.job.log.1
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user       357 May 31 14:19 output.list
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user       410 May 31 14:19 runtime_log
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user    552960 May 31 14:19 result.tar.gz
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user      8842 May 31 14:19 runtime_log.err
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user       643 May 31 14:19 d96327d2e6d1.diag
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user     21902 May 31 14:19 stderr.txt
[2026-05-31 14:19:10] HITS file was successfully produced:
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user 152720076 May 31 14:18 shared/HITS.pool.root.1
[2026-05-31 14:19:10]  *** Contents of shared directory: ***
[2026-05-31 14:19:10] total 342384
[2026-05-31 14:19:10] -rw-r--r-- 2 mf493845 unix-user     15667 May 31 13:41 start_atlas.sh
[2026-05-31 14:19:10] -rw-r--r-- 2 mf493845 unix-user    697395 May 31 13:41 input.tar.gz
[2026-05-31 14:19:10] -rw-r--r-- 2 mf493845 unix-user 196606217 May 31 13:41 ATLAS.root_0
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user 152720076 May 31 14:18 HITS.pool.root.1
[2026-05-31 14:19:10] -rw------- 1 mf493845 unix-user    552960 May 31 14:19 result.tar.gz
14:19:12 (27419): run_atlas exited; CPU time 15909.477257
14:19:12 (27419): called boinc_finish(0)

</stderr_txt>
]]>

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