Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
14:16:57 (23168): wrapper (7.7.26015): starting
14:16:57 (23168): wrapper: running run_atlas (--nthreads 8)
[2026-05-31 14:16:57] Arguments: --nthreads 8
[2026-05-31 14:16:57] Threads: 8
[2026-05-31 14:16:57] Checking for CVMFS
[2026-05-31 14:16:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-31 14:16:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-31 14:16:57] Running cvmfs_config stat atlas.cern.ch
[2026-05-31 14:16:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-31 14:16:57] 2.11.0.0 4664 27412 69904 159996 3 1 3715908 4096001 0 130560 1 7799328 99.808 2527989 888 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-05-31 14:16:57] CVMFS is ok
[2026-05-31 14:16:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-31 14:16:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-31 14:16:57] Further information can be found at the LHC@home message board.
[2026-05-31 14:16:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-31 14:16:57] Checking for apptainer binary...
[2026-05-31 14:16:57] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-05-31 14:16:57] apptainer is not installed, using version from CVMFS
[2026-05-31 14:16:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-31 14:16:58] WARNING: Environment variable TMPDIR already has value [/tmp/job_11686890/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node395
[2026-05-31 14:16:58] apptainer works
[2026-05-31 14:16:58] Set ATHENA_PROC_NUMBER=8
[2026-05-31 14:16:58] Set ATHENA_CORE_NUMBER=8
[2026-05-31 14:16:58] Starting ATLAS job with PandaID=7157758554
[2026-05-31 14:16:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11686890/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-31 15:06:34]  *** The last 200 lines of the pilot log: ***
[2026-05-31 15:06:34]  ddmendpoint=NDGF-T1_DATADISK
[2026-05-31 15:06:34]  ddmendpoint_alt=None
[2026-05-31 15:06:34]  direct_access_lan=False
[2026-05-31 15:06:34]  direct_access_wan=False
[2026-05-31 15:06:34]  domain=
[2026-05-31 15:06:34]  filesize=272833
[2026-05-31 15:06:34]  filetype=log
[2026-05-31 15:06:34]  guid=1ecebd2f-b8d1-45af-8e0d-c7d451a4f9a5
[2026-05-31 15:06:34]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-31 15:06:34]  is_altstaged=None
[2026-05-31 15:06:34]  is_tar=False
[2026-05-31 15:06:34]  lfn=log.50340623._003207.job.log.tgz.1
[2026-05-31 15:06:34]  mtime=0
[2026-05-31 15:06:34]  protocol_id=None
[2026-05-31 15:06:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-31 15:06:34]  replicas=None
[2026-05-31 15:06:34]  scope=mc23_13p6TeV
[2026-05-31 15:06:34]  status=None
[2026-05-31 15:06:34]  status_code=0
[2026-05-31 15:06:34]  storage_token=
[2026-05-31 15:06:34]  surl=/tmp/job_11686890/atlas/pilot/slots/0/PanDA_Pilot-7157758554/log.50340623._003207.job.log.tgz.1
[2026-05-31 15:06:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/ca/log.50340623._003207.job.log.tgz.1
[2026-05-31 15:06:34]  workdir=None
[2026-05-31 15:06:34] ]
[2026-05-31 15:06:34] 2026-05-31 13:06:00,795 | INFO     | transferring file log.50340623._003207.job.log.tgz.1 from /tmp/job_11686890/atlas/pilot/slots/0/PanDA_Pilot-7157758554/log.50340623._003207.job.log.tgz.1 to /tmp/j
[2026-05-31 15:06:34] 2026-05-31 13:06:00,795 | INFO     | executing command: /usr/bin/env mv /tmp/job_11686890/atlas/pilot/slots/0/PanDA_Pilot-7157758554/log.50340623._003207.job.log.tgz.1 /tmp/job_11686890/atlas/pilot/sl
[2026-05-31 15:06:34] 2026-05-31 13:06:00,803 | INFO     | adding to output.list: log.50340623._003207.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/07/ca/log.50340623._003207.job.log.tg
[2026-05-31 15:06:34] 2026-05-31 13:06:00,804 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-31 15:06:34] 2026-05-31 13:06:00,804 | INFO     | summary of transferred files:
[2026-05-31 15:06:34] 2026-05-31 13:06:00,804 | INFO     |  -- lfn=log.50340623._003207.job.log.tgz.1, status_code=0, status=transferred
[2026-05-31 15:06:34] 2026-05-31 13:06:00,804 | INFO     | stage-out finished correctly
[2026-05-31 15:06:34] 2026-05-31 13:06:01,583 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-31 15:06:34] 2026-05-31 13:06:02,350 | INFO     | job 7157758554 has state=finished
[2026-05-31 15:06:34] 2026-05-31 13:06:02,351 | INFO     | preparing for final server update for job 7157758554 in state='finished'
[2026-05-31 15:06:34] 2026-05-31 13:06:02,351 | INFO     | reading metadata from: /tmp/job_11686890/atlas/pilot/slots/0/PanDA_Pilot-7157758554/jobReport.json
[2026-05-31 15:06:34] 2026-05-31 13:06:02,352 | INFO     | added worker_node to metadata from /tmp/job_11686890/atlas/pilot/slots/0/workernode_map.json
[2026-05-31 15:06:34] 2026-05-31 13:06:02,352 | INFO     | this job has now completed (state=finished)
[2026-05-31 15:06:34] 2026-05-31 13:06:02,352 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-31 15:06:34] 2026-05-31 13:06:02,352 | INFO     | log transfer has been attempted: DONE
[2026-05-31 15:06:34] 2026-05-31 13:06:02,352 | INFO     | job 7157758554 has finished - writing final server update
[2026-05-31 15:06:34] 2026-05-31 13:06:02,352 | INFO     | total number of processed events: 400 (read)
[2026-05-31 15:06:34] 2026-05-31 13:06:02,371 | INFO     | using path: /tmp/job_11686890/atlas/pilot/slots/0/PanDA_Pilot-7157758554/memory_monitor_summary.json (trf name=prmon)
[2026-05-31 15:06:34] 2026-05-31 13:06:02,371 | INFO     | extracted standard info from prmon json
[2026-05-31 15:06:34] 2026-05-31 13:06:02,371 | INFO     | extracted standard memory fields from prmon json
[2026-05-31 15:06:34] 2026-05-31 13:06:02,371 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-31 15:06:34] 2026-05-31 13:06:02,371 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-31 15:06:34] 2026-05-31 13:06:02,372 | INFO     | fitting pss+swap vs Time
[2026-05-31 15:06:34] 2026-05-31 13:06:02,372 | INFO     | sum of square deviations: 21358540.0
[2026-05-31 15:06:34] 2026-05-31 13:06:02,372 | INFO     | sum of deviations: -1878509152.0
[2026-05-31 15:06:34] 2026-05-31 13:06:02,372 | INFO     | mean x (centered): 0.0
[2026-05-31 15:06:34] 2026-05-31 13:06:02,372 | INFO     | mean y: 2566874.463414634
[2026-05-31 15:06:34] 2026-05-31 13:06:02,372 | INFO     | intersect: 2566874.463414634
[2026-05-31 15:06:34] 2026-05-31 13:06:02,372 | INFO     | chi2: 0.022017199149859338
[2026-05-31 15:06:34] 2026-05-31 13:06:02,372 | INFO     | current memory leak: -87.95 B/s (using 41 data points, chi2=0.02)
[2026-05-31 15:06:34] 2026-05-31 13:06:02,372 | INFO     | could have reported an average CPU frequency of 2365 MHz (5 samples)
[2026-05-31 15:06:34] 2026-05-31 13:06:02,372 | INFO     | ..............................
[2026-05-31 15:06:34] 2026-05-31 13:06:02,372 | INFO     | . Timing measurements:
[2026-05-31 15:06:34] 2026-05-31 13:06:02,373 | INFO     | . get job = 0 s
[2026-05-31 15:06:34] 2026-05-31 13:06:02,373 | INFO     | . initial setup = 2 s
[2026-05-31 15:06:34] 2026-05-31 13:06:02,373 | INFO     | . payload setup = 3 s
[2026-05-31 15:06:34] 2026-05-31 13:06:02,373 | INFO     | . stage-in = 0 s
[2026-05-31 15:06:34] 2026-05-31 13:06:02,373 | INFO     | . payload execution = 2917 s
[2026-05-31 15:06:34] 2026-05-31 13:06:02,373 | INFO     | . stage-out = 0 s
[2026-05-31 15:06:34] 2026-05-31 13:06:02,373 | INFO     | . log creation = 0 s
[2026-05-31 15:06:34] 2026-05-31 13:06:02,373 | INFO     | ..............................
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | 
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | job summary report
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | --------------------------------------------------
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | PanDA job id: 7157758554
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | task id: 50340623
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | errors: (none)
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | pilot state: finished 
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | transexitcode: 0
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | exeerrorcode: 0
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | exeerrordiag: 
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | exitcode: 0
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | exitmsg: OK
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | cpuconsumptiontime: 21341 s
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | nevents: 400
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | neventsw: 0
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | pid: 1040
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | pgrp: 1040
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | corecount: 8
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | event service: False
[2026-05-31 15:06:34] 2026-05-31 13:06:02,420 | INFO     | sizes: {0: 2267720, 11: 2267720, 2924: 2293179, 2925: 2302262, 2926: 2302262, 2927: 2302488}
[2026-05-31 15:06:34] 2026-05-31 13:06:02,421 | INFO     | --------------------------------------------------
[2026-05-31 15:06:34] 2026-05-31 13:06:02,421 | INFO     | 
[2026-05-31 15:06:34] 2026-05-31 13:06:02,421 | INFO     | executing command: ls -lF /tmp/job_11686890/atlas/pilot/slots/0
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,429 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-31 15:06:34] 2026-05-31 13:06:02,430 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,430 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-31 15:06:34] 2026-05-31 13:06:02,430 | INFO     | job 7157758554 has completed (purged errors)
[2026-05-31 15:06:34] 2026-05-31 13:06:02,430 | INFO     | overall cleanup function is called
[2026-05-31 15:06:34] 2026-05-31 13:06:03,435 | INFO     | --- collectZombieJob: --- 10, [1040]
[2026-05-31 15:06:34] 2026-05-31 13:06:03,435 | INFO     | zombie collector waiting for pid 1040
[2026-05-31 15:06:34] 2026-05-31 13:06:03,436 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-31 15:06:34] 2026-05-31 13:06:03,436 | INFO     | collected zombie processes
[2026-05-31 15:06:34] 2026-05-31 13:06:03,436 | INFO     | will attempt to kill all subprocesses of pid=1040
[2026-05-31 15:06:34] 2026-05-31 13:06:03,527 | INFO     | process IDs to be killed: [1040] (in reverse order)
[2026-05-31 15:06:34] 2026-05-31 13:06:03,567 | WARNING  | found no corresponding commands to process id(s)
[2026-05-31 15:06:34] 2026-05-31 13:06:03,567 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-31 15:06:34] 2026-05-31 13:06:03,571 | INFO     | did not find any defunct processes belonging to 1040
[2026-05-31 15:06:34] 2026-05-31 13:06:03,574 | INFO     | did not find any defunct processes belonging to 1040
[2026-05-31 15:06:34] 2026-05-31 13:06:03,574 | INFO     | Ready for new job
[2026-05-31 15:06:34] 2026-05-31 13:06:03,575 | INFO     | ***************************************
[2026-05-31 15:06:34] 2026-05-31 13:06:03,575 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-31 15:06:34] 2026-05-31 13:06:03,575 | INFO     | ***************************************
[2026-05-31 15:06:34] 2026-05-31 13:06:03,575 | INFO     | 
[2026-05-31 15:06:34] 2026-05-31 13:06:03,589 | INFO     | architecture information:
[2026-05-31 15:06:34] 2026-05-31 13:06:03,589 | INFO     | executing command: cat /etc/os-release
[2026-05-31 15:06:34] 2026-05-31 13:06:03,596 | INFO     | cat /etc/os-release:
[2026-05-31 15:06:34] NAME="CentOS Linux"
[2026-05-31 15:06:34] VERSION="7 (Core)"
[2026-05-31 15:06:34] ID="centos"
[2026-05-31 15:06:34] ID_LIKE="rhel fedora"
[2026-05-31 15:06:34] VERSION_ID="7"
[2026-05-31 15:06:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-31 15:06:34] ANSI_COLOR="0;31"
[2026-05-31 15:06:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-31 15:06:34] HOME_URL="https://www.centos.org/"
[2026-05-31 15:06:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-31 15:06:34] 
[2026-05-31 15:06:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-31 15:06:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-31 15:06:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-31 15:06:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-31 15:06:34] 
[2026-05-31 15:06:34] 2026-05-31 13:06:03,596 | INFO     | ***************************************
[2026-05-31 15:06:34] 2026-05-31 13:06:04,099 | INFO     | executing command: df -mP /tmp/job_11686890/atlas/pilot/slots/0
[2026-05-31 15:06:34] 2026-05-31 13:06:04,105 | INFO     | sufficient remaining disk space (223265947648 B)
[2026-05-31 15:06:34] 2026-05-31 13:06:04,105 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-31 15:06:34] 2026-05-31 13:06:04,106 | INFO     | current server update state: UPDATING_FINAL
[2026-05-31 15:06:34] 2026-05-31 13:06:04,106 | INFO     | update_server=False
[2026-05-31 15:06:34] 2026-05-31 13:06:04,106 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-31 15:06:34] 2026-05-31 13:06:04,106 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-31 15:06:34] 2026-05-31 13:06:04,106 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-31 15:06:34] 2026-05-31 13:06:04,106 | INFO     | aborting loop
[2026-05-31 15:06:34] 2026-05-31 13:06:04,106 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-31 15:06:34] 2026-05-31 13:06:04,106 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-31 15:06:34] 2026-05-31 13:06:04,276 | INFO     | all payload control threads have been joined
[2026-05-31 15:06:34] 2026-05-31 13:06:04,553 | INFO     | all job control threads have been joined
[2026-05-31 15:06:34] 2026-05-31 13:06:04,587 | INFO     | job.realtimelogging is not enabled
[2026-05-31 15:06:34] 2026-05-31 13:06:05,111 | INFO     | [job] retrieve thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:05,111 | INFO     | [job] job monitor thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:05,111 | INFO     | [job] queue monitor thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:05,158 | INFO     | all data control threads have been joined
[2026-05-31 15:06:34] 2026-05-31 13:06:05,280 | INFO     | [payload] failed_post thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:05,281 | INFO     | [payload] control thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:05,558 | INFO     | [job] control thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:05,593 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:05,721 | INFO     | [job] create_data_payload thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:05,745 | INFO     | [payload] validate_pre thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:05,777 | INFO     | [job] validate thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:05,893 | INFO     | [payload] execute_payloads thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:05,961 | INFO     | [data] copytool_in thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:06,111 | INFO     | [data] copytool_out thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:06,163 | INFO     | [data] control thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:06,234 | INFO     | [payload] validate_post thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:08,111 | INFO     | [data] queue_monitor thread has finished
[2026-05-31 15:06:34] 2026-05-31 13:06:09,040 | INFO     | [monitor] cgroup control has ended
[2026-05-31 15:06:34] 2026-05-31 13:06:11,094 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067565312)>']
[2026-05-31 15:06:34] 2026-05-31 13:06:16,119 | INFO     | all workflow threads have been joined
[2026-05-31 15:06:34] 2026-05-31 13:06:16,119 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-31 15:06:34] 2026-05-31 13:06:16,119 | INFO     | traces error code: 0
[2026-05-31 15:06:34] 2026-05-31 13:06:16,119 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-31 15:06:34] 2026-05-31 13:06:33,902 | INFO     | PID=27758 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-31 15:06:34] 2026-05-31 13:06:33,902 | INFO     | .. there are 6 such processes running
[2026-05-31 15:06:34] 2026-05-31 13:06:33,902 | INFO     | found 0 job(s) in 20 queues
[2026-05-31 15:06:34] 2026-05-31 13:06:33,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-31 15:06:34] 2026-05-31 13:06:33,902 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-31 15:06:34] 2026-05-31 13:06:33,902 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-31 15:06:34] 2026-05-31 13:06:33,902 | INFO     | [monitor] control thread has ended
[2026-05-31 15:06:34] 2026-05-31 13:06:33,955 [wrapper] ==== pilot stdout END ====
[2026-05-31 15:06:34] 2026-05-31 13:06:33,957 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-31 15:06:34] 2026-05-31 13:06:33,958 [wrapper] pilotpid: 27758
[2026-05-31 15:06:34] 2026-05-31 13:06:33,959 [wrapper] Pilot exit status: 0
[2026-05-31 15:06:34] 2026-05-31 13:06:33,963 [wrapper] pandaids: 7157758554
[2026-05-31 15:06:34] 2026-05-31 13:06:33,987 [wrapper] cleanup supervisor_pilot 32089 27759
[2026-05-31 15:06:34] 2026-05-31 13:06:33,989 [wrapper] Test setup, not cleaning
[2026-05-31 15:06:34] 2026-05-31 13:06:33,990 [wrapper] apfmon messages muted
[2026-05-31 15:06:34] 2026-05-31 13:06:33,991 [wrapper] ==== wrapper stdout END ====
[2026-05-31 15:06:34] 2026-05-31 13:06:33,992 [wrapper] ==== wrapper stderr END ====
[2026-05-31 15:06:34]  *** Error codes and diagnostics ***
[2026-05-31 15:06:34]     "exeErrorCode": 0,
[2026-05-31 15:06:34]     "pilotErrorCode": 0,
[2026-05-31 15:06:34]  *** Listing of results directory ***
[2026-05-31 15:06:34] total 619096
[2026-05-31 15:06:34] -rwx------ 1 mf493845 unix-user     36281 May 31 08:42 runpilot2-wrapper.sh
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user      5631 May 31 08:42 queuedata.json
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user    683926 May 31 08:42 pilot3.tar.gz
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user       100 May 31 12:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-31 15:06:34] -rwxr-xr-x 1 mf493845 unix-user      7986 May 31 12:24 run_atlas
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user       105 May 31 12:24 job.xml
[2026-05-31 15:06:34] -rw-r--r-- 2 mf493845 unix-user     15667 May 31 14:16 start_atlas.sh
[2026-05-31 15:06:34] drwxrwx--x 2 mf493845 unix-user       100 May 31 14:16 shared
[2026-05-31 15:06:34] -rw-r--r-- 2 mf493845 unix-user    697419 May 31 14:16 input.tar.gz
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user      6307 May 31 14:16 init_data.xml
[2026-05-31 15:06:34] -rw-r--r-- 2 mf493845 unix-user 441549240 May 31 14:16 EVNT.47837091._001534.pool.root.1
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user         0 May 31 14:16 boinc_setup_complete
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user      8192 May 31 14:16 boinc_mmap_file
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user         0 May 31 14:16 boinc_lockfile
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user      2581 May 31 14:16 pandaJob.out
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user    995637 May 31 14:17 agis_schedconf.cvmfs.json
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user   1502789 May 31 14:17 agis_ddmendpoints.agis.ALL.json
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user       416 May 31 14:17 workernode_map.json
[2026-05-31 15:06:34] drwx------ 5 mf493845 unix-user       520 May 31 14:17 pilot3
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user 187116344 May 31 15:05 HITS.50340623._003207.pool.root.1
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user        95 May 31 15:05 pilot_heartbeat.json
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user      1013 May 31 15:05 memory_monitor_summary.json
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user    272833 May 31 15:06 log.50340623._003207.job.log.tgz.1
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user      6329 May 31 15:06 heartbeat_new.json
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user      6219 May 31 15:06 heartbeat.json
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user       820 May 31 15:06 pilotlog.txt
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user    324291 May 31 15:06 log.50340623._003207.job.log.1
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user       357 May 31 15:06 output.list
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user       410 May 31 15:06 runtime_log
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user    614400 May 31 15:06 result.tar.gz
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user      8842 May 31 15:06 runtime_log.err
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user       644 May 31 15:06 d86b3f53f074.diag
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user     21209 May 31 15:06 stderr.txt
[2026-05-31 15:06:34] HITS file was successfully produced:
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user 187116344 May 31 15:05 shared/HITS.pool.root.1
[2026-05-31 15:06:34]  *** Contents of shared directory: ***
[2026-05-31 15:06:34] total 615236
[2026-05-31 15:06:34] -rw-r--r-- 2 mf493845 unix-user     15667 May 31 14:16 start_atlas.sh
[2026-05-31 15:06:34] -rw-r--r-- 2 mf493845 unix-user    697419 May 31 14:16 input.tar.gz
[2026-05-31 15:06:34] -rw-r--r-- 2 mf493845 unix-user 441549240 May 31 14:16 ATLAS.root_0
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user 187116344 May 31 15:05 HITS.pool.root.1
[2026-05-31 15:06:34] -rw------- 1 mf493845 unix-user    614400 May 31 15:06 result.tar.gz
15:06:35 (23168): run_atlas exited; CPU time 21378.026929
15:06:35 (23168): called boinc_finish(0)

</stderr_txt>
]]>

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