Stderr output

<core_client_version>8.2.13</core_client_version>
<![CDATA[
<stderr_txt>
09:11:01 (1366257): wrapper (7.7.26015): starting
09:11:01 (1366257): wrapper: running run_atlas (--nthreads 12)
[2026-05-31 09:11:01] Arguments: --nthreads 12
[2026-05-31 09:11:01] Threads: 12
[2026-05-31 09:11:01] Checking for CVMFS
[2026-05-31 09:11:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-31 09:11:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-31 09:11:01] Running cvmfs_config stat atlas.cern.ch
[2026-05-31 09:11:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-31 09:11:02] 2.13.3.0 3174352 25743 65136 159988 1 187 2611420 4096001 672 130560 0 24290387 99.994 639566 1703 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://127.0.0.1:3128 1
[2026-05-31 09:11:02] CVMFS is ok
[2026-05-31 09:11:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-31 09:11:02] Checking for apptainer binary...
[2026-05-31 09:11:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-31 09:11:02] Running /usr/bin/apptainer --version
[2026-05-31 09:11:02] apptainer version 1.5.0-rc.2
[2026-05-31 09:11:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-31 09:11:02] NLDW4-3-13-13
[2026-05-31 09:11:02] apptainer works
[2026-05-31 09:11:02] Set ATHENA_PROC_NUMBER=12
[2026-05-31 09:11:02] Set ATHENA_CORE_NUMBER=12
[2026-05-31 09:11:02] Starting ATLAS job with PandaID=7160317166
[2026-05-31 09:11:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/29 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-31 10:26:37]  *** The last 200 lines of the pilot log: ***
[2026-05-31 10:26:37]  status=None
[2026-05-31 10:26:37]  status_code=0
[2026-05-31 10:26:37]  storage_token=
[2026-05-31 10:26:37]  surl=/var/lib/boinc/slots/29/PanDA_Pilot-7160317166/log.49545130._020411.job.log.tgz.1
[2026-05-31 10:26:37]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/d3/log.49545130._020411.job.log.tgz.1
[2026-05-31 10:26:37]  workdir=None
[2026-05-31 10:26:37] ]
[2026-05-31 10:26:37] 2026-05-31 08:25:59,875 | INFO     | transferring file log.49545130._020411.job.log.tgz.1 from /var/lib/boinc/slots/29/PanDA_Pilot-7160317166/log.49545130._020411.job.log.tgz.1 to /var/lib/boinc/slots
[2026-05-31 10:26:37] 2026-05-31 08:25:59,875 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/29/PanDA_Pilot-7160317166/log.49545130._020411.job.log.tgz.1 /var/lib/boinc/slots/29/log.49545130._020411.j
[2026-05-31 10:26:37] 2026-05-31 08:25:59,898 | INFO     | adding to output.list: log.49545130._020411.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3a/d3/log.49545130._020411.job.log.tg
[2026-05-31 10:26:37] 2026-05-31 08:25:59,899 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-31 10:26:37] 2026-05-31 08:25:59,899 | INFO     | summary of transferred files:
[2026-05-31 10:26:37] 2026-05-31 08:25:59,899 | INFO     |  -- lfn=log.49545130._020411.job.log.tgz.1, status_code=0, status=transferred
[2026-05-31 10:26:37] 2026-05-31 08:25:59,899 | INFO     | stage-out finished correctly
[2026-05-31 10:26:37] 2026-05-31 08:26:01,732 | WARNING  | process 1377303 can no longer be monitored (due to stat problems) - aborting
[2026-05-31 10:26:37] 2026-05-31 08:26:01,732 | INFO     | using path: /var/lib/boinc/slots/29/PanDA_Pilot-7160317166/memory_monitor_summary.json (trf name=prmon)
[2026-05-31 10:26:37] 2026-05-31 08:26:01,733 | INFO     | using path: /var/lib/boinc/slots/29/PanDA_Pilot-7160317166/memory_monitor_summary.json (trf name=prmon)
[2026-05-31 10:26:37] 2026-05-31 08:26:01,734 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-05-31 10:26:37] 2026-05-31 08:26:01,734 | WARNING  | maxPSS not found in memory monitor output
[2026-05-31 10:26:37] 2026-05-31 08:26:01,734 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 4677867 B
[2026-05-31 10:26:37] 2026-05-31 08:26:01,735 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15835 B
[2026-05-31 10:26:37] 2026-05-31 08:26:01,735 | INFO     | executing command: df -mP /var/lib/boinc/slots/29
[2026-05-31 10:26:37] 2026-05-31 08:26:01,754 | INFO     | sufficient remaining disk space (868194713600 B)
[2026-05-31 10:26:37] 2026-05-31 08:26:01,755 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-05-31 10:26:37] 2026-05-31 08:26:01,756 | INFO     | size of work directory /var/lib/boinc/slots/29/PanDA_Pilot-7160317166: 4974481 B (within 5033164800 B limit)
[2026-05-31 10:26:37] 2026-05-31 08:26:01,757 | INFO     | pfn file=/var/lib/boinc/slots/29/PanDA_Pilot-7160317166/HITS.49545130._020411.pool.root.1 does not exist (skip from workdir size calculation)
[2026-05-31 10:26:37] 2026-05-31 08:26:01,757 | INFO     | total size of present files: 0 B (workdir size: 4974481 B)
[2026-05-31 10:26:37] 2026-05-31 08:26:01,757 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/29/PanDA_Pilot-7160317166/HITS.49545130._020411.pool.root.1 since it does not exist
[2026-05-31 10:26:37] 2026-05-31 08:26:01,888 | INFO     | number of running child processes to parent process 1377303: 1
[2026-05-31 10:26:37] 2026-05-31 08:26:01,888 | INFO     | maximum number of monitored processes: 6
[2026-05-31 10:26:37] 2026-05-31 08:26:03,109 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-31 10:26:37] 2026-05-31 08:26:04,164 | INFO     | job 7160317166 has state=finished
[2026-05-31 10:26:37] 2026-05-31 08:26:04,165 | INFO     | preparing for final server update for job 7160317166 in state='finished'
[2026-05-31 10:26:37] 2026-05-31 08:26:04,165 | INFO     | reading metadata from: /var/lib/boinc/slots/29/PanDA_Pilot-7160317166/jobReport.json
[2026-05-31 10:26:37] 2026-05-31 08:26:04,169 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/29/workernode_map.json
[2026-05-31 10:26:37] 2026-05-31 08:26:04,169 | INFO     | this job has now completed (state=finished)
[2026-05-31 10:26:37] 2026-05-31 08:26:04,169 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-31 10:26:37] 2026-05-31 08:26:04,170 | INFO     | log transfer has been attempted: DONE
[2026-05-31 10:26:37] 2026-05-31 08:26:04,170 | INFO     | job 7160317166 has finished - writing final server update
[2026-05-31 10:26:37] 2026-05-31 08:26:04,170 | INFO     | total number of processed events: 400 (read)
[2026-05-31 10:26:37] 2026-05-31 08:26:04,177 | INFO     | using path: /var/lib/boinc/slots/29/PanDA_Pilot-7160317166/memory_monitor_summary.json (trf name=prmon)
[2026-05-31 10:26:37] 2026-05-31 08:26:04,178 | INFO     | extracted standard info from prmon json
[2026-05-31 10:26:37] 2026-05-31 08:26:04,178 | INFO     | extracted standard memory fields from prmon json
[2026-05-31 10:26:37] 2026-05-31 08:26:04,178 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-31 10:26:37] 2026-05-31 08:26:04,178 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-31 10:26:37] 2026-05-31 08:26:04,180 | INFO     | fitting pss+swap vs Time
[2026-05-31 10:26:37] 2026-05-31 08:26:04,181 | INFO     | sum of square deviations: 89127252.5
[2026-05-31 10:26:37] 2026-05-31 08:26:04,181 | INFO     | sum of deviations: 1268086635.5000002
[2026-05-31 10:26:37] 2026-05-31 08:26:04,181 | INFO     | mean x (centered): 0.0
[2026-05-31 10:26:37] 2026-05-31 08:26:04,181 | INFO     | mean y: 2740559.4696969697
[2026-05-31 10:26:37] 2026-05-31 08:26:04,181 | INFO     | intersect: 2740559.4696969697
[2026-05-31 10:26:37] 2026-05-31 08:26:04,182 | INFO     | chi2: 0.0028093027798108345
[2026-05-31 10:26:37] 2026-05-31 08:26:04,182 | INFO     | current memory leak: 14.23 B/s (using 66 data points, chi2=0.00)
[2026-05-31 10:26:37] 2026-05-31 08:26:04,182 | INFO     | could have reported an average CPU frequency of 1827 MHz (6 samples)
[2026-05-31 10:26:37] 2026-05-31 08:26:04,182 | INFO     | ..............................
[2026-05-31 10:26:37] 2026-05-31 08:26:04,183 | INFO     | . Timing measurements:
[2026-05-31 10:26:37] 2026-05-31 08:26:04,183 | INFO     | . get job = 0 s
[2026-05-31 10:26:37] 2026-05-31 08:26:04,183 | INFO     | . initial setup = 5 s
[2026-05-31 10:26:37] 2026-05-31 08:26:04,183 | INFO     | . payload setup = 10 s
[2026-05-31 10:26:37] 2026-05-31 08:26:04,183 | INFO     | . stage-in = 0 s
[2026-05-31 10:26:37] 2026-05-31 08:26:04,183 | INFO     | . payload execution = 4457 s
[2026-05-31 10:26:37] 2026-05-31 08:26:04,183 | INFO     | . stage-out = 0 s
[2026-05-31 10:26:37] 2026-05-31 08:26:04,183 | INFO     | . log creation = 0 s
[2026-05-31 10:26:37] 2026-05-31 08:26:04,183 | INFO     | ..............................
[2026-05-31 10:26:37] 2026-05-31 08:26:04,302 | INFO     | 
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | job summary report
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | --------------------------------------------------
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | PanDA job id: 7160317166
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | task id: 49545130
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | errors: (none)
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | pilot state: finished 
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | transexitcode: 0
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | exeerrorcode: 0
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | exeerrordiag: 
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | exitcode: 0
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | exitmsg: OK
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | cpuconsumptiontime: 49518 s
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | nevents: 400
[2026-05-31 10:26:37] 2026-05-31 08:26:04,303 | INFO     | neventsw: 0
[2026-05-31 10:26:37] 2026-05-31 08:26:04,304 | INFO     | pid: 1377303
[2026-05-31 10:26:37] 2026-05-31 08:26:04,304 | INFO     | pgrp: 1377303
[2026-05-31 10:26:37] 2026-05-31 08:26:04,304 | INFO     | corecount: 12
[2026-05-31 10:26:37] 2026-05-31 08:26:04,304 | INFO     | event service: False
[2026-05-31 10:26:37] 2026-05-31 08:26:04,304 | INFO     | sizes: {0: 2265888, 1: 2267717, 11: 2267717, 4471: 2293753, 4472: 2302753, 4475: 2302837, 4477: 2303159}
[2026-05-31 10:26:37] 2026-05-31 08:26:04,304 | INFO     | --------------------------------------------------
[2026-05-31 10:26:37] 2026-05-31 08:26:04,304 | INFO     | 
[2026-05-31 10:26:37] 2026-05-31 08:26:04,304 | INFO     | executing command: ls -lF /var/lib/boinc/slots/29
[2026-05-31 10:26:37] 2026-05-31 08:26:04,324 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,325 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,325 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,325 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,325 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,325 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,325 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,325 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,325 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,326 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,326 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,326 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,326 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,326 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,326 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,326 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,326 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,326 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-31 10:26:37] 2026-05-31 08:26:04,327 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,327 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-31 10:26:37] 2026-05-31 08:26:04,327 | INFO     | job 7160317166 has completed (purged errors)
[2026-05-31 10:26:37] 2026-05-31 08:26:04,327 | INFO     | overall cleanup function is called
[2026-05-31 10:26:37] 2026-05-31 08:26:05,336 | INFO     | --- collectZombieJob: --- 10, [1377303]
[2026-05-31 10:26:37] 2026-05-31 08:26:05,336 | INFO     | zombie collector waiting for pid 1377303
[2026-05-31 10:26:37] 2026-05-31 08:26:05,336 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-31 10:26:37] 2026-05-31 08:26:05,336 | INFO     | collected zombie processes
[2026-05-31 10:26:37] 2026-05-31 08:26:05,336 | INFO     | will attempt to kill all subprocesses of pid=1377303
[2026-05-31 10:26:37] 2026-05-31 08:26:05,454 | INFO     | process IDs to be killed: [1377303] (in reverse order)
[2026-05-31 10:26:37] 2026-05-31 08:26:05,515 | WARNING  | found no corresponding commands to process id(s)
[2026-05-31 10:26:37] 2026-05-31 08:26:05,516 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-31 10:26:37] 2026-05-31 08:26:05,520 | INFO     | did not find any defunct processes belonging to 1377303
[2026-05-31 10:26:37] 2026-05-31 08:26:05,524 | INFO     | did not find any defunct processes belonging to 1377303
[2026-05-31 10:26:37] 2026-05-31 08:26:05,524 | INFO     | Ready for new job
[2026-05-31 10:26:37] 2026-05-31 08:26:05,526 | INFO     | ***************************************
[2026-05-31 10:26:37] 2026-05-31 08:26:05,526 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-31 10:26:37] 2026-05-31 08:26:05,526 | INFO     | ***************************************
[2026-05-31 10:26:37] 2026-05-31 08:26:05,526 | INFO     | 
[2026-05-31 10:26:37] 2026-05-31 08:26:05,528 | INFO     | architecture information:
[2026-05-31 10:26:37] 2026-05-31 08:26:05,528 | INFO     | executing command: cat /etc/os-release
[2026-05-31 10:26:37] 2026-05-31 08:26:05,544 | INFO     | cat /etc/os-release:
[2026-05-31 10:26:37] NAME="CentOS Linux"
[2026-05-31 10:26:37] VERSION="7 (Core)"
[2026-05-31 10:26:37] ID="centos"
[2026-05-31 10:26:37] ID_LIKE="rhel fedora"
[2026-05-31 10:26:37] VERSION_ID="7"
[2026-05-31 10:26:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-31 10:26:37] ANSI_COLOR="0;31"
[2026-05-31 10:26:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-31 10:26:37] HOME_URL="https://www.centos.org/"
[2026-05-31 10:26:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-31 10:26:37] 
[2026-05-31 10:26:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-31 10:26:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-31 10:26:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-31 10:26:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-31 10:26:37] 
[2026-05-31 10:26:37] 2026-05-31 08:26:05,544 | INFO     | ***************************************
[2026-05-31 10:26:37] 2026-05-31 08:26:06,047 | INFO     | executing command: df -mP /var/lib/boinc/slots/29
[2026-05-31 10:26:37] 2026-05-31 08:26:06,070 | INFO     | sufficient remaining disk space (868199956480 B)
[2026-05-31 10:26:37] 2026-05-31 08:26:06,070 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-31 10:26:37] 2026-05-31 08:26:06,070 | INFO     | current server update state: UPDATING_FINAL
[2026-05-31 10:26:37] 2026-05-31 08:26:06,071 | INFO     | update_server=False
[2026-05-31 10:26:37] 2026-05-31 08:26:06,071 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-31 10:26:37] 2026-05-31 08:26:06,071 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-31 10:26:37] 2026-05-31 08:26:06,071 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-31 10:26:37] 2026-05-31 08:26:06,072 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-31 10:26:37] 2026-05-31 08:26:06,072 | INFO     | aborting loop
[2026-05-31 10:26:37] 2026-05-31 08:26:06,376 | INFO     | all job control threads have been joined
[2026-05-31 10:26:37] 2026-05-31 08:26:06,504 | INFO     | all data control threads have been joined
[2026-05-31 10:26:37] 2026-05-31 08:26:07,026 | INFO     | all payload control threads have been joined
[2026-05-31 10:26:37] 2026-05-31 08:26:07,076 | INFO     | [job] job monitor thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:07,076 | INFO     | [job] retrieve thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:07,077 | INFO     | [job] queue monitor thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:07,218 | INFO     | [payload] failed_post thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:07,382 | INFO     | [job] control thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:07,489 | INFO     | [payload] execute_payloads thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:07,509 | INFO     | [data] control thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:07,845 | INFO     | [job] validate thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:08,000 | INFO     | [job] create_data_payload thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:08,031 | INFO     | [payload] control thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:08,068 | INFO     | [payload] validate_post thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:08,077 | INFO     | [data] copytool_out thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:08,088 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:08,232 | INFO     | [payload] validate_pre thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:08,502 | INFO     | [data] copytool_in thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:09,235 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-31 10:26:37] 2026-05-31 08:26:10,540 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-05-31 10:26:37] 2026-05-31 08:26:13,241 | INFO     | [data] queue_monitor thread has finished
[2026-05-31 10:26:37] 2026-05-31 08:26:23,608 | INFO     | [monitor] cgroup control has ended
[2026-05-31 10:26:37] 2026-05-31 08:26:23,674 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140308132517696)>', '<ExcThread(monitor, started 140307513468672)>']
[2026-05-31 10:26:37] 2026-05-31 08:26:28,700 | INFO     | all workflow threads have been joined
[2026-05-31 10:26:37] 2026-05-31 08:26:28,700 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-31 10:26:37] 2026-05-31 08:26:28,700 | INFO     | traces error code: 0
[2026-05-31 10:26:37] 2026-05-31 08:26:28,700 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-31 10:26:37] 2026-05-31 08:26:36,944 | INFO     | PID=1371065 has CPU usage=5.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-31 10:26:37] 2026-05-31 08:26:36,945 | INFO     | .. there are 2 such processes running
[2026-05-31 10:26:37] 2026-05-31 08:26:36,946 | INFO     | found 0 job(s) in 20 queues
[2026-05-31 10:26:37] 2026-05-31 08:26:36,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-31 10:26:37] 2026-05-31 08:26:36,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-31 10:26:37] 2026-05-31 08:26:36,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-31 10:26:37] 2026-05-31 08:26:36,946 | CRITICAL | thread 'MainThread' is not alive
[2026-05-31 10:26:37] 2026-05-31 08:26:36,947 | INFO     | [monitor] control thread has ended
[2026-05-31 10:26:37] 2026-05-31 08:26:37,064 [wrapper] ==== pilot stdout END ====
[2026-05-31 10:26:37] 2026-05-31 08:26:37,067 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-31 10:26:37] 2026-05-31 08:26:37,076 [wrapper] pilotpid: 1371065
[2026-05-31 10:26:37] 2026-05-31 08:26:37,078 [wrapper] Pilot exit status: 0
[2026-05-31 10:26:37] 2026-05-31 08:26:37,089 [wrapper] pandaids: 7160317166
[2026-05-31 10:26:37] 2026-05-31 08:26:37,126 [wrapper] cleanup supervisor_pilot 1663483 1371066
[2026-05-31 10:26:37] 2026-05-31 08:26:37,128 [wrapper] Test setup, not cleaning
[2026-05-31 10:26:37] 2026-05-31 08:26:37,131 [wrapper] apfmon messages muted
[2026-05-31 10:26:37] 2026-05-31 08:26:37,134 [wrapper] ==== wrapper stdout END ====
[2026-05-31 10:26:37] 2026-05-31 08:26:37,136 [wrapper] ==== wrapper stderr END ====
[2026-05-31 10:26:37]  *** Error codes and diagnostics ***
[2026-05-31 10:26:37]     "exeErrorCode": 0,
[2026-05-31 10:26:37]     "pilotErrorCode": 0,
[2026-05-31 10:26:37]  *** Listing of results directory ***
[2026-05-31 10:26:37] total 461168
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc    683926 May 31 02:14 pilot3.tar.gz
[2026-05-31 10:26:37] -rwx------ 1 boinc boinc     36281 May 31 02:17 runpilot2-wrapper.sh
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc      5631 May 31 02:18 queuedata.json
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc       100 May 31 09:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-31 10:26:37] -rwxr-xr-x 1 boinc boinc      7986 May 31 09:11 run_atlas
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc       105 May 31 09:11 job.xml
[2026-05-31 10:26:37] -rw-r--r-- 2 boinc boinc     15667 May 31 09:11 start_atlas.sh
[2026-05-31 10:26:37] drwxrwx--x 2 boinc boinc      4096 May 31 09:11 shared
[2026-05-31 10:26:37] -rw-r--r-- 2 boinc boinc    697433 May 31 09:11 input.tar.gz
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc      6055 May 31 09:11 init_data.xml
[2026-05-31 10:26:37] -rw-r--r-- 2 boinc boinc 282123705 May 31 09:11 EVNT.49539717._000809.pool.root.1
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc         0 May 31 09:11 boinc_setup_complete
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc         0 May 31 09:11 boinc_lockfile
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc      2605 May 31 09:11 pandaJob.out
[2026-05-31 10:26:37] -rw------- 1 boinc boinc    995580 May 31 09:11 agis_schedconf.cvmfs.json
[2026-05-31 10:26:37] -rw------- 1 boinc boinc   1502789 May 31 09:11 agis_ddmendpoints.agis.ALL.json
[2026-05-31 10:26:37] -rw------- 1 boinc boinc       435 May 31 09:11 workernode_map.json
[2026-05-31 10:26:37] drwx------ 5 boinc boinc      4096 May 31 09:11 pilot3
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc       487 May 31 10:25 boinc_task_state.xml
[2026-05-31 10:26:37] -rw------- 1 boinc boinc 184321254 May 31 10:25 HITS.49545130._020411.pool.root.1
[2026-05-31 10:26:37] -rw------- 1 boinc boinc      1027 May 31 10:25 memory_monitor_summary.json
[2026-05-31 10:26:37] -rw------- 1 boinc boinc    378883 May 31 10:25 log.49545130._020411.job.log.tgz.1
[2026-05-31 10:26:37] -rw------- 1 boinc boinc      6371 May 31 10:26 heartbeat_new.json
[2026-05-31 10:26:37] -rw------- 1 boinc boinc      6262 May 31 10:26 heartbeat.json
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc      8192 May 31 10:26 boinc_mmap_file
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc        27 May 31 10:26 wrapper_checkpoint.txt
[2026-05-31 10:26:37] -rw------- 1 boinc boinc       892 May 31 10:26 pilotlog.txt
[2026-05-31 10:26:37] -rw------- 1 boinc boinc        95 May 31 10:26 pilot_heartbeat.json
[2026-05-31 10:26:37] -rw------- 1 boinc boinc    456132 May 31 10:26 log.49545130._020411.job.log.1
[2026-05-31 10:26:37] -rw------- 1 boinc boinc       357 May 31 10:26 output.list
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc       410 May 31 10:26 runtime_log
[2026-05-31 10:26:37] -rw------- 1 boinc boinc    849920 May 31 10:26 result.tar.gz
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc      8459 May 31 10:26 runtime_log.err
[2026-05-31 10:26:37] -rw------- 1 boinc boinc       656 May 31 10:26 7e0f5a566023.diag
[2026-05-31 10:26:37] -rw-r--r-- 1 boinc boinc     21934 May 31 10:26 stderr.txt
[2026-05-31 10:26:37] HITS file was successfully produced:
[2026-05-31 10:26:37] -rw------- 1 boinc boinc 184321254 May 31 10:25 shared/HITS.pool.root.1
[2026-05-31 10:26:37]  *** Contents of shared directory: ***
[2026-05-31 10:26:37] total 457056
[2026-05-31 10:26:37] -rw-r--r-- 2 boinc boinc     15667 May 31 09:11 start_atlas.sh
[2026-05-31 10:26:37] -rw-r--r-- 2 boinc boinc    697433 May 31 09:11 input.tar.gz
[2026-05-31 10:26:37] -rw-r--r-- 2 boinc boinc 282123705 May 31 09:11 ATLAS.root_0
[2026-05-31 10:26:37] -rw------- 1 boinc boinc 184321254 May 31 10:25 HITS.pool.root.1
[2026-05-31 10:26:37] -rw------- 1 boinc boinc    849920 May 31 10:26 result.tar.gz
10:26:38 (1366257): run_atlas exited; CPU time 49582.982532
10:26:38 (1366257): called boinc_finish(0)

</stderr_txt>
]]>

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