Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:24:14 (1028471): wrapper (7.7.26015): starting
02:24:14 (1028471): wrapper: running run_atlas (--nthreads 4)
[2026-05-31 02:24:14] Arguments: --nthreads 4
[2026-05-31 02:24:14] Threads: 4
[2026-05-31 02:24:14] Checking for CVMFS
[2026-05-31 02:24:14] No cvmfs_config command found, will try listing directly
[2026-05-31 02:24:14] CVMFS is ok
[2026-05-31 02:24:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-31 02:24:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-31 02:24:14] Further information can be found at the LHC@home message board.
[2026-05-31 02:24:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-31 02:24:14] Checking for apptainer binary...
[2026-05-31 02:24:14] which: no apptainer in ((null))
[2026-05-31 02:24:14] apptainer is not installed, using version from CVMFS
[2026-05-31 02:24:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-31 02:24:14] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot44/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-05-31 02:24:14] apptainer works
[2026-05-31 02:24:14] Set ATHENA_PROC_NUMBER=4
[2026-05-31 02:24:14] Set ATHENA_CORE_NUMBER=4
[2026-05-31 02:24:14] Starting ATLAS job with PandaID=7159525136
[2026-05-31 02:24:14] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot44/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-31 05:45:04]  *** The last 200 lines of the pilot log: ***
[2026-05-31 05:45:04] 2026-05-31 03:34:56,269 | INFO     | monitor loop #843: job 0:7159525136 is in state 'finished'
[2026-05-31 05:45:04] 2026-05-31 03:34:56,269 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,803 | INFO     | job 7159525136 has state=finished
[2026-05-31 05:45:04] 2026-05-31 03:34:57,803 | INFO     | preparing for final server update for job 7159525136 in state='finished'
[2026-05-31 05:45:04] 2026-05-31 03:34:57,803 | INFO     | reading metadata from: /var/lib/boinc/var/slot44/slots/0/PanDA_Pilot-7159525136/jobReport.json
[2026-05-31 05:45:04] 2026-05-31 03:34:57,806 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot44/slots/0/workernode_map.json
[2026-05-31 05:45:04] 2026-05-31 03:34:57,807 | INFO     | this job has now completed (state=finished)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,807 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,807 | INFO     | log transfer has been attempted: DONE
[2026-05-31 05:45:04] 2026-05-31 03:34:57,807 | INFO     | job 7159525136 has finished - writing final server update
[2026-05-31 05:45:04] 2026-05-31 03:34:57,808 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1144265/.job.ad'
[2026-05-31 05:45:04] 2026-05-31 03:34:57,808 | INFO     | total number of processed events: 400 (read)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,820 | INFO     | using path: /var/lib/boinc/var/slot44/slots/0/PanDA_Pilot-7159525136/memory_monitor_summary.json (trf name=prmon)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,821 | INFO     | extracted standard info from prmon json
[2026-05-31 05:45:04] 2026-05-31 03:34:57,821 | INFO     | extracted standard memory fields from prmon json
[2026-05-31 05:45:04] 2026-05-31 03:34:57,821 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-31 05:45:04] 2026-05-31 03:34:57,821 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-31 05:45:04] 2026-05-31 03:34:57,825 | INFO     | fitting pss+swap vs Time
[2026-05-31 05:45:04] 2026-05-31 03:34:57,825 | INFO     | sum of square deviations: 2027639878.0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,826 | INFO     | sum of deviations: -34730464924.0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,826 | INFO     | mean x (centered): 0.0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,826 | INFO     | mean y: 2423742.294117647
[2026-05-31 05:45:04] 2026-05-31 03:34:57,827 | INFO     | intersect: 2423742.294117647
[2026-05-31 05:45:04] 2026-05-31 03:34:57,827 | INFO     | chi2: 1.5638844994341872
[2026-05-31 05:45:04] 2026-05-31 03:34:57,827 | INFO     | sum of square deviations: 1869302025.5
[2026-05-31 05:45:04] 2026-05-31 03:34:57,828 | INFO     | sum of deviations: -33284620689.500008
[2026-05-31 05:45:04] 2026-05-31 03:34:57,829 | INFO     | mean x (centered): 0.0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,829 | INFO     | mean y: 2425135.159340659
[2026-05-31 05:45:04] 2026-05-31 03:34:57,829 | INFO     | intersect: 2425135.159340659
[2026-05-31 05:45:04] 2026-05-31 03:34:57,829 | INFO     | chi2: 1.5591975467579535
[2026-05-31 05:45:04] 2026-05-31 03:34:57,829 | INFO     | current chi2=1.5591975467579535 (change=0.29969941373096187 %)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,829 | INFO     | right removable region: 181
[2026-05-31 05:45:04] 2026-05-31 03:34:57,829 | INFO     | sum of square deviations: 1869302025.5
[2026-05-31 05:45:04] 2026-05-31 03:34:57,830 | INFO     | sum of deviations: -56922674325.5
[2026-05-31 05:45:04] 2026-05-31 03:34:57,831 | INFO     | mean x (centered): 0.0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,831 | INFO     | mean y: 2444771.8626373624
[2026-05-31 05:45:04] 2026-05-31 03:34:57,831 | INFO     | intersect: 2444771.8626373624
[2026-05-31 05:45:04] 2026-05-31 03:34:57,831 | INFO     | chi2: 0.2526551336152451
[2026-05-31 05:45:04] 2026-05-31 03:34:57,831 | INFO     | current chi2=0.2526551336152451 (change=83.8443866086878 %)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,832 | INFO     | sum of square deviations: 1719429448.0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,832 | INFO     | sum of deviations: -50909630710.0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,833 | INFO     | mean x (centered): 0.0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,833 | INFO     | mean y: 2438645.5310734464
[2026-05-31 05:45:04] 2026-05-31 03:34:57,833 | INFO     | intersect: 2438645.5310734464
[2026-05-31 05:45:04] 2026-05-31 03:34:57,833 | INFO     | chi2: 0.2499828290986466
[2026-05-31 05:45:04] 2026-05-31 03:34:57,833 | INFO     | current chi2=0.2499828290986466 (change=1.0576885885358691 %)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,833 | INFO     | left removable region: 10
[2026-05-31 05:45:04] 2026-05-31 03:34:57,834 | INFO     | sum of square deviations: 1550429070.0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,834 | INFO     | sum of deviations: -48784552726.00001
[2026-05-31 05:45:04] 2026-05-31 03:34:57,835 | INFO     | mean x (centered): 0.0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,835 | INFO     | mean y: 2440947.5380116957
[2026-05-31 05:45:04] 2026-05-31 03:34:57,835 | INFO     | intersect: 2440947.5380116957
[2026-05-31 05:45:04] 2026-05-31 03:34:57,835 | INFO     | chi2: 0.24122236125418328
[2026-05-31 05:45:04] 2026-05-31 03:34:57,835 | INFO     | current memory leak: -31.47 B/s (using 171 data points, chi2=0.24)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,836 | INFO     | could have reported an average CPU frequency of 2676 MHz (10 samples)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,836 | INFO     | ..............................
[2026-05-31 05:45:04] 2026-05-31 03:34:57,836 | INFO     | . Timing measurements:
[2026-05-31 05:45:04] 2026-05-31 03:34:57,836 | INFO     | . get job = 0 s
[2026-05-31 05:45:04] 2026-05-31 03:34:57,836 | INFO     | . initial setup = 6 s
[2026-05-31 05:45:04] 2026-05-31 03:34:57,836 | INFO     | . payload setup = 10 s
[2026-05-31 05:45:04] 2026-05-31 03:34:57,836 | INFO     | . stage-in = 0 s
[2026-05-31 05:45:04] 2026-05-31 03:34:57,836 | INFO     | . payload execution = 11392 s
[2026-05-31 05:45:04] 2026-05-31 03:34:57,836 | INFO     | . stage-out = 1 s
[2026-05-31 05:45:04] 2026-05-31 03:34:57,837 | INFO     | . log creation = 0 s
[2026-05-31 05:45:04] 2026-05-31 03:34:57,837 | INFO     | ..............................
[2026-05-31 05:45:04] 2026-05-31 03:34:57,935 | INFO     | 
[2026-05-31 05:45:04] 2026-05-31 03:34:57,936 | INFO     | job summary report
[2026-05-31 05:45:04] 2026-05-31 03:34:57,936 | INFO     | --------------------------------------------------
[2026-05-31 05:45:04] 2026-05-31 03:34:57,936 | INFO     | PanDA job id: 7159525136
[2026-05-31 05:45:04] 2026-05-31 03:34:57,936 | INFO     | task id: 50533940
[2026-05-31 05:45:04] 2026-05-31 03:34:57,936 | INFO     | errors: (none)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,936 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-31 05:45:04] 2026-05-31 03:34:57,936 | INFO     | pilot state: finished 
[2026-05-31 05:45:04] 2026-05-31 03:34:57,936 | INFO     | transexitcode: 0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,936 | INFO     | exeerrorcode: 0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,936 | INFO     | exeerrordiag: 
[2026-05-31 05:45:04] 2026-05-31 03:34:57,936 | INFO     | exitcode: 0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,937 | INFO     | exitmsg: OK
[2026-05-31 05:45:04] 2026-05-31 03:34:57,937 | INFO     | cpuconsumptiontime: 44155 s
[2026-05-31 05:45:04] 2026-05-31 03:34:57,937 | INFO     | nevents: 400
[2026-05-31 05:45:04] 2026-05-31 03:34:57,937 | INFO     | neventsw: 0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,937 | INFO     | pid: 1037737
[2026-05-31 05:45:04] 2026-05-31 03:34:57,937 | INFO     | pgrp: 1037737
[2026-05-31 05:45:04] 2026-05-31 03:34:57,937 | INFO     | corecount: 4
[2026-05-31 05:45:04] 2026-05-31 03:34:57,937 | INFO     | event service: False
[2026-05-31 05:45:04] 2026-05-31 03:34:57,937 | INFO     | sizes: {0: 2265103, 1: 2267600, 12: 2267600, 11406: 2296866, 11409: 2305886, 11412: 2305942, 11415: 2306264}
[2026-05-31 05:45:04] 2026-05-31 03:34:57,938 | INFO     | --------------------------------------------------
[2026-05-31 05:45:04] 2026-05-31 03:34:57,938 | INFO     | 
[2026-05-31 05:45:04] 2026-05-31 03:34:57,938 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot44/slots/0
[2026-05-31 05:45:04] 2026-05-31 03:34:57,961 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,961 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,961 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,962 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,962 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,962 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,962 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,962 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,962 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,962 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,962 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,962 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,962 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,962 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,962 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,963 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,963 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,963 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,963 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,963 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-31 05:45:04] 2026-05-31 03:34:57,963 | INFO     | job 7159525136 has completed (purged errors)
[2026-05-31 05:45:04] 2026-05-31 03:34:57,963 | INFO     | overall cleanup function is called
[2026-05-31 05:45:04] 2026-05-31 03:34:58,971 | INFO     | --- collectZombieJob: --- 10, [1037737]
[2026-05-31 05:45:04] 2026-05-31 03:34:58,972 | INFO     | zombie collector waiting for pid 1037737
[2026-05-31 05:45:04] 2026-05-31 03:34:58,972 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-31 05:45:04] 2026-05-31 03:34:58,972 | INFO     | collected zombie processes
[2026-05-31 05:45:04] 2026-05-31 03:34:58,972 | INFO     | will attempt to kill all subprocesses of pid=1037737
[2026-05-31 05:45:04] 2026-05-31 03:34:59,300 | INFO     | process IDs to be killed: [1037737] (in reverse order)
[2026-05-31 05:45:04] 2026-05-31 03:34:59,421 | WARNING  | found no corresponding commands to process id(s)
[2026-05-31 05:45:04] 2026-05-31 03:34:59,422 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-31 05:45:04] 2026-05-31 03:34:59,435 | INFO     | did not find any defunct processes belonging to 1037737
[2026-05-31 05:45:04] 2026-05-31 03:34:59,449 | INFO     | did not find any defunct processes belonging to 1037737
[2026-05-31 05:45:04] 2026-05-31 03:34:59,449 | INFO     | Ready for new job
[2026-05-31 05:45:04] 2026-05-31 03:34:59,452 | INFO     | ***************************************
[2026-05-31 05:45:04] 2026-05-31 03:34:59,452 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-31 05:45:04] 2026-05-31 03:34:59,452 | INFO     | ***************************************
[2026-05-31 05:45:04] 2026-05-31 03:34:59,452 | INFO     | 
[2026-05-31 05:45:04] 2026-05-31 03:34:59,456 | INFO     | architecture information:
[2026-05-31 05:45:04] 2026-05-31 03:34:59,457 | INFO     | executing command: cat /etc/os-release
[2026-05-31 05:45:04] 2026-05-31 03:34:59,474 | INFO     | cat /etc/os-release:
[2026-05-31 05:45:04] NAME="CentOS Linux"
[2026-05-31 05:45:04] VERSION="7 (Core)"
[2026-05-31 05:45:04] ID="centos"
[2026-05-31 05:45:04] ID_LIKE="rhel fedora"
[2026-05-31 05:45:04] VERSION_ID="7"
[2026-05-31 05:45:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-31 05:45:04] ANSI_COLOR="0;31"
[2026-05-31 05:45:04] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-31 05:45:04] HOME_URL="https://www.centos.org/"
[2026-05-31 05:45:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-31 05:45:04] 
[2026-05-31 05:45:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-31 05:45:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-31 05:45:04] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-31 05:45:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-31 05:45:04] 
[2026-05-31 05:45:04] 2026-05-31 03:34:59,474 | INFO     | ***************************************
[2026-05-31 05:45:04] 2026-05-31 03:34:59,977 | INFO     | executing command: df -mP /var/lib/boinc/var/slot44/slots/0
[2026-05-31 05:45:04] 2026-05-31 03:34:59,995 | INFO     | sufficient remaining disk space (62812848128 B)
[2026-05-31 05:45:04] 2026-05-31 03:34:59,995 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-31 05:45:04] 2026-05-31 03:34:59,995 | INFO     | current server update state: UPDATING_FINAL
[2026-05-31 05:45:04] 2026-05-31 03:34:59,995 | INFO     | update_server=False
[2026-05-31 05:45:04] 2026-05-31 03:34:59,995 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-31 05:45:04] 2026-05-31 03:34:59,996 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-31 05:45:04] 2026-05-31 03:34:59,996 | INFO     | aborting loop
[2026-05-31 05:45:04] 2026-05-31 03:35:00,198 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-31 05:45:04] 2026-05-31 03:35:00,527 | INFO     | all data control threads have been joined
[2026-05-31 05:45:04] 2026-05-31 03:35:00,815 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-31 05:45:04] 2026-05-31 03:35:01,001 | INFO     | [job] retrieve thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:01,001 | INFO     | [job] job monitor thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:01,210 | INFO     | all payload control threads have been joined
[2026-05-31 05:45:04] 2026-05-31 03:35:01,227 | INFO     | all job control threads have been joined
[2026-05-31 05:45:04] 2026-05-31 03:35:01,303 | INFO     | [data] copytool_in thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:01,428 | INFO     | [payload] validate_post thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:01,532 | INFO     | [data] control thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:01,873 | INFO     | [job] validate thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:01,986 | INFO     | [payload] failed_post thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:02,152 | INFO     | [payload] execute_payloads thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:02,204 | INFO     | [data] copytool_out thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:02,215 | INFO     | [payload] control thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:02,216 | INFO     | [job] create_data_payload thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:02,232 | INFO     | [job] control thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:02,299 | INFO     | [payload] validate_pre thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:02,945 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-31 05:45:04] 2026-05-31 03:35:03,951 | INFO     | [job] queue monitor thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:04,819 | INFO     | [data] queue_monitor thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:10,716 | INFO     | job.realtimelogging is not enabled
[2026-05-31 05:45:04] 2026-05-31 03:35:11,721 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-31 05:45:04] 2026-05-31 03:35:30,353 | INFO     | PID=1032629 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-31 05:45:04] 2026-05-31 03:35:30,353 | INFO     | .. there are 7 such processes running
[2026-05-31 05:45:04] 2026-05-31 03:35:30,354 | INFO     | found 0 job(s) in 20 queues
[2026-05-31 05:45:04] 2026-05-31 03:35:30,354 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-31 05:45:04] 2026-05-31 03:35:30,354 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-31 05:45:04] 2026-05-31 03:35:48,969 | INFO     | [monitor] cgroup control has ended
[2026-05-31 05:45:04] 2026-05-31 03:35:49,812 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23412213303104)>', '<ExcThread(monitor, started 23411907901184)>']
[2026-05-31 05:45:04] 2026-05-31 03:35:50,447 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-31 05:45:04] 2026-05-31 03:35:50,447 | INFO     | [monitor] control thread has ended
[2026-05-31 05:45:04] 2026-05-31 03:35:54,838 | INFO     | all workflow threads have been joined
[2026-05-31 05:45:04] 2026-05-31 03:35:54,838 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-31 05:45:04] 2026-05-31 03:35:54,838 | INFO     | traces error code: 0
[2026-05-31 05:45:04] 2026-05-31 03:35:54,839 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-31 05:45:04] 2026-05-31 03:35:55,021 [wrapper] ==== pilot stdout END ====
[2026-05-31 05:45:04] 2026-05-31 03:35:55,024 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-31 05:45:04] 2026-05-31 03:35:55,027 [wrapper] pilotpid: 1032629
[2026-05-31 05:45:04] 2026-05-31 03:35:55,030 [wrapper] Pilot exit status: 0
[2026-05-31 05:45:04] 2026-05-31 03:35:55,042 [wrapper] pandaids: 7159525136
[2026-05-31 05:45:04] 2026-05-31 03:35:55,129 [wrapper] cleanup supervisor_pilot 1224578 1032630
[2026-05-31 05:45:04] 2026-05-31 03:35:55,132 [wrapper] Test setup, not cleaning
[2026-05-31 05:45:04] 2026-05-31 03:35:55,136 [wrapper] apfmon messages muted
[2026-05-31 05:45:04] 2026-05-31 03:35:55,138 [wrapper] ==== wrapper stdout END ====
[2026-05-31 05:45:04] 2026-05-31 03:35:55,141 [wrapper] ==== wrapper stderr END ====
[2026-05-31 05:45:04]  *** Error codes and diagnostics ***
[2026-05-31 05:45:04]     "exeErrorCode": 0,
[2026-05-31 05:45:04]     "pilotErrorCode": 0,
[2026-05-31 05:45:04]  *** Listing of results directory ***
[2026-05-31 05:45:04] total 544156
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc      5631 May 30 20:06 queuedata.json
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc    683926 May 30 20:06 pilot3.tar.gz
[2026-05-31 05:45:04] -rwx------. 1 boinc boinc     36281 May 30 20:06 runpilot2-wrapper.sh
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc       100 May 31 01:21 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-31 05:45:04] -rwxr-xr-x. 1 boinc boinc      7986 May 31 01:21 run_atlas
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc       105 May 31 01:21 job.xml
[2026-05-31 05:45:04] -rw-r--r--. 2 boinc boinc 308424869 May 31 02:24 EVNT.50532940._000535.pool.root.1
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc      6482 May 31 02:24 init_data.xml
[2026-05-31 05:45:04] -rw-r--r--. 2 boinc boinc     15667 May 31 02:24 start_atlas.sh
[2026-05-31 05:45:04] drwxrwx--x. 2 boinc boinc      4096 May 31 02:24 shared
[2026-05-31 05:45:04] -rw-r--r--. 2 boinc boinc    697409 May 31 02:24 input.tar.gz
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc         0 May 31 02:24 boinc_lockfile
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc      2514 May 31 02:24 pandaJob.out
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc    995580 May 31 02:24 agis_schedconf.cvmfs.json
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc       448 May 31 02:24 workernode_map.json
[2026-05-31 05:45:04] drwx------. 5 boinc boinc      4096 May 31 02:24 pilot3
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc 241850551 May 31 05:34 HITS.50533940._012082.pool.root.1
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc       486 May 31 05:34 boinc_task_state.xml
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc      1034 May 31 05:34 memory_monitor_summary.json
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc        95 May 31 05:34 pilot_heartbeat.json
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc   1502789 May 31 05:34 agis_ddmendpoints.agis.ALL.json
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc    320509 May 31 05:34 log.50533940._012082.job.log.tgz.1
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc      6429 May 31 05:34 heartbeat_new.json
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc      6320 May 31 05:34 heartbeat.json
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc      4903 May 31 05:35 pilotlog.txt
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc   1082553 May 31 05:35 log.50533940._012082.job.log.1
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc       357 May 31 05:35 output.list
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc       410 May 31 05:35 runtime_log
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc   1423360 May 31 05:35 result.tar.gz
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc      8828 May 31 05:35 runtime_log.err
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc       664 May 31 05:35 272d18d8add1.diag
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc        26 May 31 05:44 wrapper_checkpoint.txt
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc      8192 May 31 05:45 boinc_mmap_file
[2026-05-31 05:45:04] -rw-r--r--. 1 boinc boinc     21059 May 31 05:45 stderr.txt
[2026-05-31 05:45:04] HITS file was successfully produced:
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc 241850551 May 31 05:34 shared/HITS.pool.root.1
[2026-05-31 05:45:04]  *** Contents of shared directory: ***
[2026-05-31 05:45:04] total 539484
[2026-05-31 05:45:04] -rw-r--r--. 2 boinc boinc 308424869 May 31 02:24 ATLAS.root_0
[2026-05-31 05:45:04] -rw-r--r--. 2 boinc boinc     15667 May 31 02:24 start_atlas.sh
[2026-05-31 05:45:04] -rw-r--r--. 2 boinc boinc    697409 May 31 02:24 input.tar.gz
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc 241850551 May 31 05:34 HITS.pool.root.1
[2026-05-31 05:45:04] -rw-------. 1 boinc boinc   1423360 May 31 05:35 result.tar.gz
05:45:06 (1028471): run_atlas exited; CPU time 44613.128796
05:45:06 (1028471): called boinc_finish(0)

</stderr_txt>
]]>

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