Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:02:48 (827912): wrapper (7.7.26015): starting
15:02:48 (827912): wrapper: running run_atlas (--nthreads 3)
[2026-05-31 15:02:48] Arguments: --nthreads 3
[2026-05-31 15:02:48] Threads: 3
[2026-05-31 15:02:48] Checking for CVMFS
[2026-05-31 15:02:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-31 15:02:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-31 15:02:49] Running cvmfs_config stat atlas.cern.ch
[2026-05-31 15:02:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-31 15:02:49] 2.9.2.0 4568 5574 81184 159997 3 50 33030903 36864001 0 130560 0 3193762 99.987 186306 7468 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-05-31 15:02:49] CVMFS is ok
[2026-05-31 15:02:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-31 15:02:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-31 15:02:49] Further information can be found at the LHC@home message board.
[2026-05-31 15:02:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-31 15:02:49] Checking for apptainer binary...
[2026-05-31 15:02:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-31 15:02:49] Running /usr/bin/apptainer --version
[2026-05-31 15:02:49] apptainer version 1.4.1-1.1
[2026-05-31 15:02:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-31 15:02:49] thA331a
[2026-05-31 15:02:49] apptainer works
[2026-05-31 15:02:49] Set ATHENA_PROC_NUMBER=3
[2026-05-31 15:02:49] Set ATHENA_CORE_NUMBER=3
[2026-05-31 15:02:49] Starting ATLAS job with PandaID=7159644543
[2026-05-31 15:02:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-31 16:43:13]  *** The last 200 lines of the pilot log: ***
[2026-05-31 16:43:13]  protocol_id=None
[2026-05-31 16:43:13]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-31 16:43:13]  replicas=None
[2026-05-31 16:43:13]  scope=mc23_13p6TeV
[2026-05-31 16:43:13]  status=None
[2026-05-31 16:43:13]  status_code=0
[2026-05-31 16:43:13]  storage_token=
[2026-05-31 16:43:13]  surl=/local/data/boinc/slots/0/PanDA_Pilot-7159644543/log.50591396._000490.job.log.tgz.1
[2026-05-31 16:43:13]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/b7/log.50591396._000490.job.log.tgz.1
[2026-05-31 16:43:13]  workdir=None
[2026-05-31 16:43:13] ]
[2026-05-31 16:43:13] 2026-05-31 14:42:27,448 | INFO     | transferring file log.50591396._000490.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-7159644543/log.50591396._000490.job.log.tgz.1 to /local/data/boinc/
[2026-05-31 16:43:13] 2026-05-31 14:42:27,449 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-7159644543/log.50591396._000490.job.log.tgz.1 /local/data/boinc/slots/0/log.50591396._0004
[2026-05-31 16:43:13] 2026-05-31 14:42:27,461 | INFO     | adding to output.list: log.50591396._000490.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ca/b7/log.50591396._000490.job.log.tg
[2026-05-31 16:43:13] 2026-05-31 14:42:27,462 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-31 16:43:13] 2026-05-31 14:42:27,462 | INFO     | summary of transferred files:
[2026-05-31 16:43:13] 2026-05-31 14:42:27,462 | INFO     |  -- lfn=log.50591396._000490.job.log.tgz.1, status_code=0, status=transferred
[2026-05-31 16:43:13] 2026-05-31 14:42:27,462 | INFO     | stage-out finished correctly
[2026-05-31 16:43:13] 2026-05-31 14:42:27,530 | INFO     | PID=831958 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-31 16:43:13] 2026-05-31 14:42:28,010 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-31 16:43:13] 2026-05-31 14:42:29,696 | INFO     | job 7159644543 has state=finished
[2026-05-31 16:43:13] 2026-05-31 14:42:29,696 | INFO     | preparing for final server update for job 7159644543 in state='finished'
[2026-05-31 16:43:13] 2026-05-31 14:42:29,696 | INFO     | reading metadata from: /local/data/boinc/slots/0/PanDA_Pilot-7159644543/jobReport.json
[2026-05-31 16:43:13] 2026-05-31 14:42:29,698 | INFO     | added worker_node to metadata from /local/data/boinc/slots/0/workernode_map.json
[2026-05-31 16:43:13] 2026-05-31 14:42:29,698 | INFO     | this job has now completed (state=finished)
[2026-05-31 16:43:13] 2026-05-31 14:42:29,698 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-31 16:43:13] 2026-05-31 14:42:29,698 | INFO     | log transfer has been attempted: DONE
[2026-05-31 16:43:13] 2026-05-31 14:42:29,698 | INFO     | job 7159644543 has finished - writing final server update
[2026-05-31 16:43:13] 2026-05-31 14:42:29,698 | INFO     | total number of processed events: 400 (read)
[2026-05-31 16:43:13] 2026-05-31 14:42:29,699 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7159644543/memory_monitor_summary.json (trf name=prmon)
[2026-05-31 16:43:13] 2026-05-31 14:42:29,700 | INFO     | extracted standard info from prmon json
[2026-05-31 16:43:13] 2026-05-31 14:42:29,700 | INFO     | extracted standard memory fields from prmon json
[2026-05-31 16:43:13] 2026-05-31 14:42:29,700 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-31 16:43:13] 2026-05-31 14:42:29,700 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-31 16:43:13] 2026-05-31 14:42:29,701 | INFO     | fitting pss+swap vs Time
[2026-05-31 16:43:13] 2026-05-31 14:42:29,701 | INFO     | sum of square deviations: 233641590.0
[2026-05-31 16:43:13] 2026-05-31 14:42:29,701 | INFO     | sum of deviations: 826377431.0
[2026-05-31 16:43:13] 2026-05-31 14:42:29,701 | INFO     | mean x (centered): 0.0
[2026-05-31 16:43:13] 2026-05-31 14:42:29,701 | INFO     | mean y: 2377609.241758242
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | intersect: 2377609.241758242
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | chi2: 0.2411742810964868
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | current memory leak: 3.54 B/s (using 91 data points, chi2=0.24)
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | could have reported an average CPU frequency of 3775 MHz (7 samples)
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | ..............................
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | . Timing measurements:
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | . get job = 0 s
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | . initial setup = 3 s
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | . payload setup = 4 s
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | . stage-in = 0 s
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | . payload execution = 5949 s
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | . stage-out = 0 s
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | . log creation = 0 s
[2026-05-31 16:43:13] 2026-05-31 14:42:29,702 | INFO     | ..............................
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | 
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | job summary report
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | --------------------------------------------------
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | PanDA job id: 7159644543
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | task id: 50591396
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | errors: (none)
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | pilot state: finished 
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | transexitcode: 0
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | exeerrorcode: 0
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | exeerrordiag: 
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | exitcode: 0
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | exitmsg: OK
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | cpuconsumptiontime: 16561 s
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | nevents: 400
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | neventsw: 0
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | pid: 836380
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | pgrp: 836380
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | corecount: 3
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | event service: False
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | sizes: {0: 2267595, 11: 2267595, 5956: 2294489, 5957: 2303548, 5959: 2303686}
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | --------------------------------------------------
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | 
[2026-05-31 16:43:13] 2026-05-31 14:42:29,732 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-05-31 16:43:13] 2026-05-31 14:42:29,744 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | job 7159644543 has completed (purged errors)
[2026-05-31 16:43:13] 2026-05-31 14:42:29,745 | INFO     | overall cleanup function is called
[2026-05-31 16:43:13] 2026-05-31 14:42:30,752 | INFO     | --- collectZombieJob: --- 10, [836380]
[2026-05-31 16:43:13] 2026-05-31 14:42:30,752 | INFO     | zombie collector waiting for pid 836380
[2026-05-31 16:43:13] 2026-05-31 14:42:30,752 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-31 16:43:13] 2026-05-31 14:42:30,752 | INFO     | collected zombie processes
[2026-05-31 16:43:13] 2026-05-31 14:42:30,752 | INFO     | will attempt to kill all subprocesses of pid=836380
[2026-05-31 16:43:13] 2026-05-31 14:42:30,782 | INFO     | process IDs to be killed: [836380] (in reverse order)
[2026-05-31 16:43:13] 2026-05-31 14:42:30,806 | WARNING  | found no corresponding commands to process id(s)
[2026-05-31 16:43:13] 2026-05-31 14:42:30,806 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-31 16:43:13] 2026-05-31 14:42:30,807 | INFO     | did not find any defunct processes belonging to 836380
[2026-05-31 16:43:13] 2026-05-31 14:42:30,808 | INFO     | did not find any defunct processes belonging to 836380
[2026-05-31 16:43:13] 2026-05-31 14:42:30,808 | INFO     | Ready for new job
[2026-05-31 16:43:13] 2026-05-31 14:42:30,809 | INFO     | ***************************************
[2026-05-31 16:43:13] 2026-05-31 14:42:30,809 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-31 16:43:13] 2026-05-31 14:42:30,809 | INFO     | ***************************************
[2026-05-31 16:43:13] 2026-05-31 14:42:30,809 | INFO     | 
[2026-05-31 16:43:13] 2026-05-31 14:42:30,809 | INFO     | architecture information:
[2026-05-31 16:43:13] 2026-05-31 14:42:30,809 | INFO     | executing command: cat /etc/os-release
[2026-05-31 16:43:13] 2026-05-31 14:42:30,818 | INFO     | cat /etc/os-release:
[2026-05-31 16:43:13] NAME="CentOS Linux"
[2026-05-31 16:43:13] VERSION="7 (Core)"
[2026-05-31 16:43:13] ID="centos"
[2026-05-31 16:43:13] ID_LIKE="rhel fedora"
[2026-05-31 16:43:13] VERSION_ID="7"
[2026-05-31 16:43:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-31 16:43:13] ANSI_COLOR="0;31"
[2026-05-31 16:43:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-31 16:43:13] HOME_URL="https://www.centos.org/"
[2026-05-31 16:43:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-31 16:43:13] 
[2026-05-31 16:43:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-31 16:43:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-31 16:43:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-31 16:43:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-31 16:43:13] 
[2026-05-31 16:43:13] 2026-05-31 14:42:30,818 | INFO     | ***************************************
[2026-05-31 16:43:13] 2026-05-31 14:42:31,321 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-05-31 16:43:13] 2026-05-31 14:42:31,335 | INFO     | sufficient remaining disk space (326003326976 B)
[2026-05-31 16:43:13] 2026-05-31 14:42:31,335 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-31 16:43:13] 2026-05-31 14:42:31,335 | INFO     | current server update state: UPDATING_FINAL
[2026-05-31 16:43:13] 2026-05-31 14:42:31,335 | INFO     | update_server=False
[2026-05-31 16:43:13] 2026-05-31 14:42:31,335 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-31 16:43:13] 2026-05-31 14:42:31,336 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-31 16:43:13] 2026-05-31 14:42:31,336 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-31 16:43:13] 2026-05-31 14:42:31,520 | INFO     | all job control threads have been joined
[2026-05-31 16:43:13] 2026-05-31 14:42:31,907 | INFO     | all data control threads have been joined
[2026-05-31 16:43:13] 2026-05-31 14:42:32,341 | INFO     | [job] retrieve thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:32,341 | INFO     | [job] queue monitor thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:32,360 | INFO     | [data] copytool_in thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:32,511 | INFO     | all payload control threads have been joined
[2026-05-31 16:43:13] 2026-05-31 14:42:32,526 | INFO     | [job] control thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:32,678 | INFO     | [payload] execute_payloads thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:32,885 | WARNING  | process 836380 can no longer be monitored (due to stat problems) - aborting
[2026-05-31 16:43:13] 2026-05-31 14:42:32,911 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-31 16:43:13] 2026-05-31 14:42:32,912 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-31 16:43:13] 2026-05-31 14:42:32,912 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-05-31 16:43:13] 2026-05-31 14:42:32,912 | INFO     | [data] control thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:32,912 | WARNING  | maxPSS not found in memory monitor output
[2026-05-31 16:43:13] 2026-05-31 14:42:32,912 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7159644543/payload.stdout) since it has not been created yet
[2026-05-31 16:43:13] 2026-05-31 14:42:32,912 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-05-31 16:43:13] 2026-05-31 14:42:32,922 | INFO     | sufficient remaining disk space (326003326976 B)
[2026-05-31 16:43:13] 2026-05-31 14:42:32,922 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-05-31 16:43:13] 2026-05-31 14:42:32,922 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7159644543/HITS.50591396._000490.pool.root.1 since it does not exist
[2026-05-31 16:43:13] 2026-05-31 14:42:32,949 | INFO     | number of running child processes to parent process 836380: 1
[2026-05-31 16:43:13] 2026-05-31 14:42:32,949 | INFO     | maximum number of monitored processes: 6
[2026-05-31 16:43:13] 2026-05-31 14:42:32,949 | INFO     | aborting job monitoring since job object (job id=7159644543) has expired
[2026-05-31 16:43:13] 2026-05-31 14:42:32,950 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-31 16:43:13] 2026-05-31 14:42:32,950 | INFO     | will abort loop
[2026-05-31 16:43:13] 2026-05-31 14:42:33,002 | INFO     | [payload] validate_post thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:33,341 | INFO     | [data] copytool_out thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:33,365 | INFO     | [payload] failed_post thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:33,514 | INFO     | [payload] control thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:33,560 | INFO     | [job] validate thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:33,602 | INFO     | [payload] validate_pre thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:33,606 | INFO     | [job] create_data_payload thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:33,955 | INFO     | [job] job monitor thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:34,049 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-31 16:43:13] 2026-05-31 14:42:38,056 | INFO     | [data] queue_monitor thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:42:42,169 | INFO     | job.realtimelogging is not enabled
[2026-05-31 16:43:13] 2026-05-31 14:42:43,175 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-31 16:43:13] 2026-05-31 14:43:01,640 | INFO     | PID=831958 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-31 16:43:13] 2026-05-31 14:43:01,640 | INFO     | found 0 job(s) in 20 queues
[2026-05-31 16:43:13] 2026-05-31 14:43:01,640 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-31 16:43:13] 2026-05-31 14:43:01,640 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-31 16:43:13] 2026-05-31 14:43:06,187 | INFO     | [monitor] cgroup control has ended
[2026-05-31 16:43:13] 2026-05-31 14:43:07,969 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140000109549376)>', '<ExcThread(monitor, started 139999550891776)>']
[2026-05-31 16:43:13] 2026-05-31 14:43:08,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-31 16:43:13] 2026-05-31 14:43:08,678 | INFO     | [monitor] control thread has ended
[2026-05-31 16:43:13] 2026-05-31 14:43:12,995 | INFO     | all workflow threads have been joined
[2026-05-31 16:43:13] 2026-05-31 14:43:12,995 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-31 16:43:13] 2026-05-31 14:43:12,995 | INFO     | traces error code: 0
[2026-05-31 16:43:13] 2026-05-31 14:43:12,996 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-31 16:43:13] 2026-05-31 14:43:13,046 [wrapper] ==== pilot stdout END ====
[2026-05-31 16:43:13] 2026-05-31 14:43:13,048 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-31 16:43:13] 2026-05-31 14:43:13,051 [wrapper] pilotpid: 831958
[2026-05-31 16:43:13] 2026-05-31 14:43:13,053 [wrapper] Pilot exit status: 0
[2026-05-31 16:43:13] 2026-05-31 14:43:13,060 [wrapper] pandaids: 7159644543
[2026-05-31 16:43:13] 2026-05-31 14:43:13,076 [wrapper] cleanup supervisor_pilot  842613 831959
[2026-05-31 16:43:13] 2026-05-31 14:43:13,078 [wrapper] Test setup, not cleaning
[2026-05-31 16:43:13] 2026-05-31 14:43:13,080 [wrapper] apfmon messages muted
[2026-05-31 16:43:13] 2026-05-31 14:43:13,083 [wrapper] ==== wrapper stdout END ====
[2026-05-31 16:43:13] 2026-05-31 14:43:13,085 [wrapper] ==== wrapper stderr END ====
[2026-05-31 16:43:13]  *** Error codes and diagnostics ***
[2026-05-31 16:43:13]     "exeErrorCode": 0,
[2026-05-31 16:43:13]     "pilotErrorCode": 0,
[2026-05-31 16:43:13]  *** Listing of results directory ***
[2026-05-31 16:43:13] total 515664
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc    683926 May 30 22:08 pilot3.tar.gz
[2026-05-31 16:43:13] -rwx------ 1 boinc boinc     36281 May 30 22:08 runpilot2-wrapper.sh
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc      5631 May 30 22:09 queuedata.json
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc       100 May 31 15:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-31 16:43:13] -rwxr-xr-x 1 boinc boinc      7986 May 31 15:02 run_atlas
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc       105 May 31 15:02 job.xml
[2026-05-31 16:43:13] -rw-r--r-- 2 boinc boinc 297594237 May 31 15:02 EVNT.50469892._002020.pool.root.1
[2026-05-31 16:43:13] -rw-r--r-- 2 boinc boinc    697421 May 31 15:02 input.tar.gz
[2026-05-31 16:43:13] -rw-r--r-- 2 boinc boinc     15667 May 31 15:02 start_atlas.sh
[2026-05-31 16:43:13] drwxrwx--x 2 boinc boinc      4096 May 31 15:02 shared
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc         0 May 31 15:02 boinc_setup_complete
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc      6355 May 31 15:02 init_data.xml
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc         0 May 31 15:02 boinc_lockfile
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc      2550 May 31 15:02 pandaJob.out
[2026-05-31 16:43:13] -rw------- 1 boinc boinc    995637 May 31 15:02 agis_schedconf.cvmfs.json
[2026-05-31 16:43:13] -rw------- 1 boinc boinc   1502789 May 31 15:02 agis_ddmendpoints.agis.ALL.json
[2026-05-31 16:43:13] -rw------- 1 boinc boinc       428 May 31 15:02 workernode_map.json
[2026-05-31 16:43:13] drwx------ 5 boinc boinc      4096 May 31 15:02 pilot3
[2026-05-31 16:43:13] -rw------- 1 boinc boinc 224678792 May 31 16:42 HITS.50591396._000490.pool.root.1
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc       487 May 31 16:42 boinc_task_state.xml
[2026-05-31 16:43:13] -rw------- 1 boinc boinc      1020 May 31 16:42 memory_monitor_summary.json
[2026-05-31 16:43:13] -rw------- 1 boinc boinc        95 May 31 16:42 pilot_heartbeat.json
[2026-05-31 16:43:13] -rw------- 1 boinc boinc    242420 May 31 16:42 log.50591396._000490.job.log.tgz.1
[2026-05-31 16:43:13] -rw------- 1 boinc boinc      6325 May 31 16:42 heartbeat_new.json
[2026-05-31 16:43:13] -rw------- 1 boinc boinc      6216 May 31 16:42 heartbeat.json
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc      8192 May 31 16:43 boinc_mmap_file
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc        27 May 31 16:43 wrapper_checkpoint.txt
[2026-05-31 16:43:13] -rw------- 1 boinc boinc      6321 May 31 16:43 pilotlog.txt
[2026-05-31 16:43:13] -rw------- 1 boinc boinc    575126 May 31 16:43 log.50591396._000490.job.log.1
[2026-05-31 16:43:13] -rw------- 1 boinc boinc       357 May 31 16:43 output.list
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc       410 May 31 16:43 runtime_log
[2026-05-31 16:43:13] -rw------- 1 boinc boinc    839680 May 31 16:43 result.tar.gz
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc      8524 May 31 16:43 runtime_log.err
[2026-05-31 16:43:13] -rw------- 1 boinc boinc       658 May 31 16:43 43d4cb8a8435.diag
[2026-05-31 16:43:13] -rw-r--r-- 1 boinc boinc     21977 May 31 16:43 stderr.txt
[2026-05-31 16:43:13] HITS file was successfully produced:
[2026-05-31 16:43:13] -rw------- 1 boinc boinc 224678792 May 31 16:42 shared/HITS.pool.root.1
[2026-05-31 16:43:13]  *** Contents of shared directory: ***
[2026-05-31 16:43:13] total 511564
[2026-05-31 16:43:13] -rw-r--r-- 2 boinc boinc 297594237 May 31 15:02 ATLAS.root_0
[2026-05-31 16:43:13] -rw-r--r-- 2 boinc boinc    697421 May 31 15:02 input.tar.gz
[2026-05-31 16:43:13] -rw-r--r-- 2 boinc boinc     15667 May 31 15:02 start_atlas.sh
[2026-05-31 16:43:13] -rw------- 1 boinc boinc 224678792 May 31 16:42 HITS.pool.root.1
[2026-05-31 16:43:13] -rw------- 1 boinc boinc    839680 May 31 16:43 result.tar.gz
16:43:14 (827912): run_atlas exited; CPU time 16582.184530
16:43:14 (827912): called boinc_finish(0)

</stderr_txt>
]]>

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