Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:54:58 (726631): wrapper (7.7.26015): starting
02:54:58 (726631): wrapper: running run_atlas (--nthreads 3)
[2026-05-31 02:54:58] Arguments: --nthreads 3
[2026-05-31 02:54:58] Threads: 3
[2026-05-31 02:54:58] Checking for CVMFS
[2026-05-31 02:54:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-31 02:54:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-31 02:54:59] Running cvmfs_config stat atlas.cern.ch
[2026-05-31 02:54:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-31 02:54:59] 2.9.2.0 4568 4846 81668 159981 1 50 32942852 36864000 0 130560 0 2806852 99.987 165012 7363 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-05-31 02:54:59] CVMFS is ok
[2026-05-31 02:54:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-31 02:54:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-31 02:54:59] Further information can be found at the LHC@home message board.
[2026-05-31 02:54:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-31 02:54:59] Checking for apptainer binary...
[2026-05-31 02:54:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-31 02:54:59] Running /usr/bin/apptainer --version
[2026-05-31 02:54:59] apptainer version 1.4.1-1.1
[2026-05-31 02:54:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-31 02:54:59] thA331a
[2026-05-31 02:54:59] apptainer works
[2026-05-31 02:54:59] Set ATHENA_PROC_NUMBER=3
[2026-05-31 02:54:59] Set ATHENA_CORE_NUMBER=3
[2026-05-31 02:54:59] Starting ATLAS job with PandaID=7158571831
[2026-05-31 02:54:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-31 04:34:27]  *** The last 200 lines of the pilot log: ***
[2026-05-31 04:34:27]  filetype=log
[2026-05-31 04:34:27]  guid=177eb388-e2a7-4f7a-881f-d9c068cf7ae4
[2026-05-31 04:34:27]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-31 04:34:27]  is_altstaged=None
[2026-05-31 04:34:27]  is_tar=False
[2026-05-31 04:34:27]  lfn=log.50591392._001049.job.log.tgz.1
[2026-05-31 04:34:27]  mtime=0
[2026-05-31 04:34:27]  protocol_id=None
[2026-05-31 04:34:27]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-31 04:34:27]  replicas=None
[2026-05-31 04:34:27]  scope=mc23_13p6TeV
[2026-05-31 04:34:27]  status=None
[2026-05-31 04:34:27]  status_code=0
[2026-05-31 04:34:27]  storage_token=
[2026-05-31 04:34:27]  surl=/local/data/boinc/slots/0/PanDA_Pilot-7158571831/log.50591392._001049.job.log.tgz.1
[2026-05-31 04:34:27]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/97/log.50591392._001049.job.log.tgz.1
[2026-05-31 04:34:27]  workdir=None
[2026-05-31 04:34:27] ]
[2026-05-31 04:34:27] 2026-05-31 02:33:50,278 | INFO     | transferring file log.50591392._001049.job.log.tgz.1 from /local/data/boinc/slots/0/PanDA_Pilot-7158571831/log.50591392._001049.job.log.tgz.1 to /local/data/boinc/
[2026-05-31 04:34:27] 2026-05-31 02:33:50,278 | INFO     | executing command: /usr/bin/env mv /local/data/boinc/slots/0/PanDA_Pilot-7158571831/log.50591392._001049.job.log.tgz.1 /local/data/boinc/slots/0/log.50591392._0010
[2026-05-31 04:34:27] 2026-05-31 02:33:50,290 | INFO     | adding to output.list: log.50591392._001049.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a4/97/log.50591392._001049.job.log.tg
[2026-05-31 04:34:27] 2026-05-31 02:33:50,291 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-31 04:34:27] 2026-05-31 02:33:50,291 | INFO     | summary of transferred files:
[2026-05-31 04:34:27] 2026-05-31 02:33:50,291 | INFO     |  -- lfn=log.50591392._001049.job.log.tgz.1, status_code=0, status=transferred
[2026-05-31 04:34:27] 2026-05-31 02:33:50,291 | INFO     | stage-out finished correctly
[2026-05-31 04:34:27] 2026-05-31 02:33:50,383 | WARNING  | process 735101 can no longer be monitored (due to stat problems) - aborting
[2026-05-31 04:34:27] 2026-05-31 02:33:50,383 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7158571831/memory_monitor_summary.json (trf name=prmon)
[2026-05-31 04:34:27] 2026-05-31 02:33:50,408 | INFO     | number of running child processes to parent process 735101: 1
[2026-05-31 04:34:27] 2026-05-31 02:33:50,408 | INFO     | maximum number of monitored processes: 6
[2026-05-31 04:34:27] 2026-05-31 02:33:52,889 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-31 04:34:27] 2026-05-31 02:33:52,920 | INFO     | monitor loop #457: job 0:7158571831 is in state 'finished'
[2026-05-31 04:34:27] 2026-05-31 02:33:52,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-31 04:34:27] 2026-05-31 02:33:53,018 | INFO     | PID=730674 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-31 04:34:27] 2026-05-31 02:33:55,327 | INFO     | job 7158571831 has state=finished
[2026-05-31 04:34:27] 2026-05-31 02:33:55,327 | INFO     | preparing for final server update for job 7158571831 in state='finished'
[2026-05-31 04:34:27] 2026-05-31 02:33:55,328 | INFO     | reading metadata from: /local/data/boinc/slots/0/PanDA_Pilot-7158571831/jobReport.json
[2026-05-31 04:34:27] 2026-05-31 02:33:55,329 | INFO     | added worker_node to metadata from /local/data/boinc/slots/0/workernode_map.json
[2026-05-31 04:34:27] 2026-05-31 02:33:55,329 | INFO     | this job has now completed (state=finished)
[2026-05-31 04:34:27] 2026-05-31 02:33:55,329 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-31 04:34:27] 2026-05-31 02:33:55,329 | INFO     | log transfer has been attempted: DONE
[2026-05-31 04:34:27] 2026-05-31 02:33:55,329 | INFO     | job 7158571831 has finished - writing final server update
[2026-05-31 04:34:27] 2026-05-31 02:33:55,329 | INFO     | total number of processed events: 400 (read)
[2026-05-31 04:34:27] 2026-05-31 02:33:55,330 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7158571831/memory_monitor_summary.json (trf name=prmon)
[2026-05-31 04:34:27] 2026-05-31 02:33:55,331 | INFO     | extracted standard info from prmon json
[2026-05-31 04:34:27] 2026-05-31 02:33:55,331 | INFO     | extracted standard memory fields from prmon json
[2026-05-31 04:34:27] 2026-05-31 02:33:55,331 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-31 04:34:27] 2026-05-31 02:33:55,331 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-31 04:34:27] 2026-05-31 02:33:55,331 | INFO     | fitting pss+swap vs Time
[2026-05-31 04:34:27] 2026-05-31 02:33:55,332 | INFO     | sum of square deviations: 226022842.5
[2026-05-31 04:34:27] 2026-05-31 02:33:55,332 | INFO     | sum of deviations: -5365511901.500002
[2026-05-31 04:34:27] 2026-05-31 02:33:55,332 | INFO     | mean x (centered): 0.0
[2026-05-31 04:34:27] 2026-05-31 02:33:55,332 | INFO     | mean y: 2411713.9
[2026-05-31 04:34:27] 2026-05-31 02:33:55,332 | INFO     | intersect: 2411713.9
[2026-05-31 04:34:27] 2026-05-31 02:33:55,332 | INFO     | chi2: 0.3066243499209434
[2026-05-31 04:34:27] 2026-05-31 02:33:55,332 | INFO     | current memory leak: -23.74 B/s (using 90 data points, chi2=0.31)
[2026-05-31 04:34:27] 2026-05-31 02:33:55,332 | INFO     | could have reported an average CPU frequency of 3539 MHz (7 samples)
[2026-05-31 04:34:27] 2026-05-31 02:33:55,332 | INFO     | ..............................
[2026-05-31 04:34:27] 2026-05-31 02:33:55,332 | INFO     | . Timing measurements:
[2026-05-31 04:34:27] 2026-05-31 02:33:55,332 | INFO     | . get job = 0 s
[2026-05-31 04:34:27] 2026-05-31 02:33:55,332 | INFO     | . initial setup = 3 s
[2026-05-31 04:34:27] 2026-05-31 02:33:55,333 | INFO     | . payload setup = 4 s
[2026-05-31 04:34:27] 2026-05-31 02:33:55,333 | INFO     | . stage-in = 0 s
[2026-05-31 04:34:27] 2026-05-31 02:33:55,333 | INFO     | . payload execution = 5902 s
[2026-05-31 04:34:27] 2026-05-31 02:33:55,333 | INFO     | . stage-out = 0 s
[2026-05-31 04:34:27] 2026-05-31 02:33:55,333 | INFO     | . log creation = 0 s
[2026-05-31 04:34:27] 2026-05-31 02:33:55,333 | INFO     | ..............................
[2026-05-31 04:34:27] 2026-05-31 02:33:55,362 | INFO     | 
[2026-05-31 04:34:27] 2026-05-31 02:33:55,362 | INFO     | job summary report
[2026-05-31 04:34:27] 2026-05-31 02:33:55,362 | INFO     | --------------------------------------------------
[2026-05-31 04:34:27] 2026-05-31 02:33:55,362 | INFO     | PanDA job id: 7158571831
[2026-05-31 04:34:27] 2026-05-31 02:33:55,362 | INFO     | task id: 50591392
[2026-05-31 04:34:27] 2026-05-31 02:33:55,362 | INFO     | errors: (none)
[2026-05-31 04:34:27] 2026-05-31 02:33:55,362 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-31 04:34:27] 2026-05-31 02:33:55,362 | INFO     | pilot state: finished 
[2026-05-31 04:34:27] 2026-05-31 02:33:55,362 | INFO     | transexitcode: 0
[2026-05-31 04:34:27] 2026-05-31 02:33:55,362 | INFO     | exeerrorcode: 0
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | exeerrordiag: 
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | exitcode: 0
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | exitmsg: OK
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | cpuconsumptiontime: 16435 s
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | nevents: 400
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | neventsw: 0
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | pid: 735101
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | pgrp: 735101
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | corecount: 3
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | event service: False
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | sizes: {0: 2267596, 11: 2267596, 5909: 2294489, 5910: 2303493, 5912: 2303549, 5915: 2303743}
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | --------------------------------------------------
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | 
[2026-05-31 04:34:27] 2026-05-31 02:33:55,363 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-05-31 04:34:27] 2026-05-31 02:33:55,374 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | job 7158571831 has completed (purged errors)
[2026-05-31 04:34:27] 2026-05-31 02:33:55,375 | INFO     | overall cleanup function is called
[2026-05-31 04:34:27] 2026-05-31 02:33:56,382 | INFO     | --- collectZombieJob: --- 10, [735101]
[2026-05-31 04:34:27] 2026-05-31 02:33:56,382 | INFO     | zombie collector waiting for pid 735101
[2026-05-31 04:34:27] 2026-05-31 02:33:56,382 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-31 04:34:27] 2026-05-31 02:33:56,382 | INFO     | collected zombie processes
[2026-05-31 04:34:27] 2026-05-31 02:33:56,382 | INFO     | will attempt to kill all subprocesses of pid=735101
[2026-05-31 04:34:27] 2026-05-31 02:33:56,412 | INFO     | process IDs to be killed: [735101] (in reverse order)
[2026-05-31 04:34:27] 2026-05-31 02:33:56,435 | WARNING  | found no corresponding commands to process id(s)
[2026-05-31 04:34:27] 2026-05-31 02:33:56,435 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-31 04:34:27] 2026-05-31 02:33:56,436 | INFO     | did not find any defunct processes belonging to 735101
[2026-05-31 04:34:27] 2026-05-31 02:33:56,437 | INFO     | did not find any defunct processes belonging to 735101
[2026-05-31 04:34:27] 2026-05-31 02:33:56,437 | INFO     | Ready for new job
[2026-05-31 04:34:27] 2026-05-31 02:33:56,438 | INFO     | ***************************************
[2026-05-31 04:34:27] 2026-05-31 02:33:56,438 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-31 04:34:27] 2026-05-31 02:33:56,438 | INFO     | ***************************************
[2026-05-31 04:34:27] 2026-05-31 02:33:56,438 | INFO     | 
[2026-05-31 04:34:27] 2026-05-31 02:33:56,438 | INFO     | architecture information:
[2026-05-31 04:34:27] 2026-05-31 02:33:56,438 | INFO     | executing command: cat /etc/os-release
[2026-05-31 04:34:27] 2026-05-31 02:33:56,447 | INFO     | cat /etc/os-release:
[2026-05-31 04:34:27] NAME="CentOS Linux"
[2026-05-31 04:34:27] VERSION="7 (Core)"
[2026-05-31 04:34:27] ID="centos"
[2026-05-31 04:34:27] ID_LIKE="rhel fedora"
[2026-05-31 04:34:27] VERSION_ID="7"
[2026-05-31 04:34:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-31 04:34:27] ANSI_COLOR="0;31"
[2026-05-31 04:34:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-31 04:34:27] HOME_URL="https://www.centos.org/"
[2026-05-31 04:34:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-31 04:34:27] 
[2026-05-31 04:34:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-31 04:34:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-31 04:34:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-31 04:34:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-31 04:34:27] 
[2026-05-31 04:34:27] 2026-05-31 02:33:56,447 | INFO     | ***************************************
[2026-05-31 04:34:27] 2026-05-31 02:33:56,951 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-05-31 04:34:27] 2026-05-31 02:33:56,964 | INFO     | sufficient remaining disk space (325862817792 B)
[2026-05-31 04:34:27] 2026-05-31 02:33:56,965 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-31 04:34:27] 2026-05-31 02:33:56,965 | INFO     | current server update state: UPDATING_FINAL
[2026-05-31 04:34:27] 2026-05-31 02:33:56,965 | INFO     | update_server=False
[2026-05-31 04:34:27] 2026-05-31 02:33:56,965 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-31 04:34:27] 2026-05-31 02:33:56,965 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-31 04:34:27] 2026-05-31 02:33:56,965 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-31 04:34:27] 2026-05-31 02:33:56,965 | INFO     | aborting loop
[2026-05-31 04:34:27] 2026-05-31 02:33:57,055 | INFO     | all job control threads have been joined
[2026-05-31 04:34:27] 2026-05-31 02:33:57,362 | INFO     | all payload control threads have been joined
[2026-05-31 04:34:27] 2026-05-31 02:33:57,659 | INFO     | all data control threads have been joined
[2026-05-31 04:34:27] 2026-05-31 02:33:57,970 | INFO     | [job] retrieve thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:33:57,971 | INFO     | [job] queue monitor thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:33:57,971 | INFO     | [job] job monitor thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:33:58,061 | INFO     | [job] control thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:33:58,334 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-31 04:34:27] 2026-05-31 02:33:58,368 | INFO     | [payload] control thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:33:58,373 | INFO     | [job] validate thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:33:58,377 | INFO     | [payload] failed_post thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:33:58,458 | INFO     | [payload] validate_pre thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:33:58,462 | INFO     | [job] create_data_payload thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:33:58,516 | INFO     | [payload] execute_payloads thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:33:58,650 | INFO     | [data] copytool_in thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:33:58,664 | INFO     | [data] control thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:33:58,927 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-31 04:34:27] 2026-05-31 02:33:59,050 | INFO     | [payload] validate_post thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:34:00,340 | INFO     | [data] copytool_out thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:34:02,934 | INFO     | [data] queue_monitor thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:34:07,698 | INFO     | job.realtimelogging is not enabled
[2026-05-31 04:34:27] 2026-05-31 02:34:08,704 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-31 04:34:27] 2026-05-31 02:34:15,774 | INFO     | [monitor] cgroup control has ended
[2026-05-31 04:34:27] 2026-05-31 02:34:17,263 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139626308892480)>', '<ExcThread(monitor, started 139625653839616)>']
[2026-05-31 04:34:27] 2026-05-31 02:34:22,289 | INFO     | all workflow threads have been joined
[2026-05-31 04:34:27] 2026-05-31 02:34:22,289 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-31 04:34:27] 2026-05-31 02:34:22,289 | INFO     | traces error code: 0
[2026-05-31 04:34:27] 2026-05-31 02:34:22,289 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-31 04:34:27] 2026-05-31 02:34:27,120 | INFO     | PID=730674 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-31 04:34:27] 2026-05-31 02:34:27,121 | INFO     | found 0 job(s) in 20 queues
[2026-05-31 04:34:27] 2026-05-31 02:34:27,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-31 04:34:27] 2026-05-31 02:34:27,121 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-31 04:34:27] 2026-05-31 02:34:27,121 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-31 04:34:27] 2026-05-31 02:34:27,121 | INFO     | [monitor] control thread has ended
[2026-05-31 04:34:27] 2026-05-31 02:34:27,168 [wrapper] ==== pilot stdout END ====
[2026-05-31 04:34:27] 2026-05-31 02:34:27,170 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-31 04:34:27] 2026-05-31 02:34:27,173 [wrapper] pilotpid: 730674
[2026-05-31 04:34:27] 2026-05-31 02:34:27,175 [wrapper] Pilot exit status: 0
[2026-05-31 04:34:27] 2026-05-31 02:34:27,182 [wrapper] pandaids: 7158571831
[2026-05-31 04:34:27] 2026-05-31 02:34:27,198 [wrapper] cleanup supervisor_pilot  740443 730675
[2026-05-31 04:34:27] 2026-05-31 02:34:27,200 [wrapper] Test setup, not cleaning
[2026-05-31 04:34:27] 2026-05-31 02:34:27,202 [wrapper] apfmon messages muted
[2026-05-31 04:34:27] 2026-05-31 02:34:27,205 [wrapper] ==== wrapper stdout END ====
[2026-05-31 04:34:27] 2026-05-31 02:34:27,207 [wrapper] ==== wrapper stderr END ====
[2026-05-31 04:34:27]  *** Error codes and diagnostics ***
[2026-05-31 04:34:27]     "exeErrorCode": 0,
[2026-05-31 04:34:27]     "pilotErrorCode": 0,
[2026-05-31 04:34:27]  *** Listing of results directory ***
[2026-05-31 04:34:27] total 516920
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc      5631 May 30 10:25 queuedata.json
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc    683926 May 30 10:25 pilot3.tar.gz
[2026-05-31 04:34:27] -rwx------ 1 boinc boinc     36281 May 30 10:28 runpilot2-wrapper.sh
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc       100 May 31 02:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-31 04:34:27] -rwxr-xr-x 1 boinc boinc      7986 May 31 02:54 run_atlas
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc       105 May 31 02:54 job.xml
[2026-05-31 04:34:27] -rw-r--r-- 2 boinc boinc 296141683 May 31 02:54 EVNT.50469892._000042.pool.root.1
[2026-05-31 04:34:27] -rw-r--r-- 2 boinc boinc    697417 May 31 02:54 input.tar.gz
[2026-05-31 04:34:27] -rw-r--r-- 2 boinc boinc     15667 May 31 02:54 start_atlas.sh
[2026-05-31 04:34:27] drwxrwx--x 2 boinc boinc      4096 May 31 02:54 shared
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc         0 May 31 02:54 boinc_setup_complete
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc      6355 May 31 02:54 init_data.xml
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc         0 May 31 02:54 boinc_lockfile
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc      2551 May 31 02:54 pandaJob.out
[2026-05-31 04:34:27] -rw------- 1 boinc boinc    995580 May 31 02:55 agis_schedconf.cvmfs.json
[2026-05-31 04:34:27] -rw------- 1 boinc boinc   1502789 May 31 02:55 agis_ddmendpoints.agis.ALL.json
[2026-05-31 04:34:27] -rw------- 1 boinc boinc       428 May 31 02:55 workernode_map.json
[2026-05-31 04:34:27] drwx------ 5 boinc boinc      4096 May 31 02:55 pilot3
[2026-05-31 04:34:27] -rw------- 1 boinc boinc 227418085 May 31 04:33 HITS.50591392._001049.pool.root.1
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc       487 May 31 04:33 boinc_task_state.xml
[2026-05-31 04:34:27] -rw------- 1 boinc boinc        95 May 31 04:33 pilot_heartbeat.json
[2026-05-31 04:34:27] -rw------- 1 boinc boinc      1020 May 31 04:33 memory_monitor_summary.json
[2026-05-31 04:34:27] -rw------- 1 boinc boinc    253335 May 31 04:33 log.50591392._001049.job.log.tgz.1
[2026-05-31 04:34:27] -rw------- 1 boinc boinc      6332 May 31 04:33 heartbeat_new.json
[2026-05-31 04:34:27] -rw------- 1 boinc boinc      6223 May 31 04:33 heartbeat.json
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc        27 May 31 04:34 wrapper_checkpoint.txt
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc      8192 May 31 04:34 boinc_mmap_file
[2026-05-31 04:34:27] -rw------- 1 boinc boinc       746 May 31 04:34 pilotlog.txt
[2026-05-31 04:34:27] -rw------- 1 boinc boinc    570917 May 31 04:34 log.50591392._001049.job.log.1
[2026-05-31 04:34:27] -rw------- 1 boinc boinc       357 May 31 04:34 output.list
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc       410 May 31 04:34 runtime_log
[2026-05-31 04:34:27] -rw------- 1 boinc boinc    839680 May 31 04:34 result.tar.gz
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc      8524 May 31 04:34 runtime_log.err
[2026-05-31 04:34:27] -rw------- 1 boinc boinc       658 May 31 04:34 9fc594c99256.diag
[2026-05-31 04:34:27] -rw-r--r-- 1 boinc boinc     21325 May 31 04:34 stderr.txt
[2026-05-31 04:34:27] HITS file was successfully produced:
[2026-05-31 04:34:27] -rw------- 1 boinc boinc 227418085 May 31 04:33 shared/HITS.pool.root.1
[2026-05-31 04:34:27]  *** Contents of shared directory: ***
[2026-05-31 04:34:27] total 512820
[2026-05-31 04:34:27] -rw-r--r-- 2 boinc boinc 296141683 May 31 02:54 ATLAS.root_0
[2026-05-31 04:34:27] -rw-r--r-- 2 boinc boinc    697417 May 31 02:54 input.tar.gz
[2026-05-31 04:34:27] -rw-r--r-- 2 boinc boinc     15667 May 31 02:54 start_atlas.sh
[2026-05-31 04:34:27] -rw------- 1 boinc boinc 227418085 May 31 04:33 HITS.pool.root.1
[2026-05-31 04:34:27] -rw------- 1 boinc boinc    839680 May 31 04:34 result.tar.gz
04:34:29 (726631): run_atlas exited; CPU time 16455.771997
04:34:29 (726631): called boinc_finish(0)

</stderr_txt>
]]>

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