Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:20:40 (1565232): wrapper (7.7.26015): starting
21:20:40 (1565232): wrapper: running run_atlas (--nthreads 9)
[2026-05-29 21:20:40] Arguments: --nthreads 9
[2026-05-29 21:20:40] Threads: 9
[2026-05-29 21:20:40] Checking for CVMFS
[2026-05-29 21:20:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-29 21:20:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-29 21:20:42] Running cvmfs_config stat atlas.cern.ch
[2026-05-29 21:20:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-29 21:20:43] 2.13.3.0 8348 42454 474820 159951 3 467 32207906 40960000 53051 16776704 0 237589870 99.877 87482502 30157 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-05-29 21:20:43] CVMFS is ok
[2026-05-29 21:20:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-29 21:20:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-29 21:20:44] Further information can be found at the LHC@home message board.
[2026-05-29 21:20:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-29 21:20:44] Checking for apptainer binary...
[2026-05-29 21:20:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-29 21:20:44] Running /usr/bin/apptainer --version
[2026-05-29 21:20:44] apptainer version 1.4.5-3.el9
[2026-05-29 21:20:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-29 21:20:45] c-1-1.aglt2.org
[2026-05-29 21:20:45] apptainer works
[2026-05-29 21:20:45] Set ATHENA_PROC_NUMBER=9
[2026-05-29 21:20:45] Set ATHENA_CORE_NUMBER=9
[2026-05-29 21:20:45] Starting ATLAS job with PandaID=7157469451
[2026-05-29 21:20:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-30 05:55:29]  *** The last 200 lines of the pilot log: ***
[2026-05-30 05:55:29] 2026-05-30 09:54:22,061 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-30 05:55:29] 2026-05-30 09:54:22,061 | INFO     | log transfer has been attempted: DONE
[2026-05-30 05:55:29] 2026-05-30 09:54:22,061 | INFO     | job 7157469451 has finished - writing final server update
[2026-05-30 05:55:29] 2026-05-30 09:54:22,074 | INFO     | total number of processed events: 400 (read)
[2026-05-30 05:55:29] 2026-05-30 09:54:22,174 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7157469451/memory_monitor_summary.json (trf name=prmon)
[2026-05-30 05:55:29] 2026-05-30 09:54:22,175 | INFO     | extracted standard info from prmon json
[2026-05-30 05:55:29] 2026-05-30 09:54:22,175 | INFO     | extracted standard memory fields from prmon json
[2026-05-30 05:55:29] 2026-05-30 09:54:22,176 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-30 05:55:29] 2026-05-30 09:54:22,176 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-30 05:55:29] 2026-05-30 09:54:22,225 | INFO     | fitting pss+swap vs Time
[2026-05-30 05:55:29] 2026-05-30 09:54:22,226 | INFO     | sum of square deviations: 38994582353.209526
[2026-05-30 05:55:29] 2026-05-30 09:54:22,232 | INFO     | sum of deviations: -33363373308.85028
[2026-05-30 05:55:29] 2026-05-30 09:54:22,232 | INFO     | mean x (centered): 0.0
[2026-05-30 05:55:29] 2026-05-30 09:54:22,232 | INFO     | mean y: 2593940.9221556885
[2026-05-30 05:55:29] 2026-05-30 09:54:22,232 | INFO     | intersect: 2593940.9221556885
[2026-05-30 05:55:29] 2026-05-30 09:54:22,233 | INFO     | chi2: 5.148954705296363
[2026-05-30 05:55:29] 2026-05-30 09:54:22,234 | INFO     | sum of square deviations: 37838772590.98181
[2026-05-30 05:55:29] 2026-05-30 09:54:22,239 | INFO     | sum of deviations: 32555210144.473732
[2026-05-30 05:55:29] 2026-05-30 09:54:22,239 | INFO     | mean x (centered): 0.0
[2026-05-30 05:55:29] 2026-05-30 09:54:22,239 | INFO     | mean y: 2602585.8245967743
[2026-05-30 05:55:29] 2026-05-30 09:54:22,239 | INFO     | intersect: 2602585.8245967743
[2026-05-30 05:55:29] 2026-05-30 09:54:22,240 | INFO     | chi2: 3.7790870477675464
[2026-05-30 05:55:29] 2026-05-30 09:54:22,240 | INFO     | current chi2=3.7790870477675464 (change=26.604771957300994 %)
[2026-05-30 05:55:29] 2026-05-30 09:54:22,241 | INFO     | sum of square deviations: 36706003016.737495
[2026-05-30 05:55:29] 2026-05-30 09:54:22,246 | INFO     | sum of deviations: 31937055363.507214
[2026-05-30 05:55:29] 2026-05-30 09:54:22,246 | INFO     | mean x (centered): 0.0
[2026-05-30 05:55:29] 2026-05-30 09:54:22,246 | INFO     | mean y: 2602502.602851324
[2026-05-30 05:55:29] 2026-05-30 09:54:22,246 | INFO     | intersect: 2602502.602851324
[2026-05-30 05:55:29] 2026-05-30 09:54:22,247 | INFO     | chi2: 3.779339298282387
[2026-05-30 05:55:29] 2026-05-30 09:54:22,247 | INFO     | current chi2=3.779339298282387 (change=-0.00667490617845341 %)
[2026-05-30 05:55:29] 2026-05-30 09:54:22,247 | INFO     | right removable region: 490
[2026-05-30 05:55:29] 2026-05-30 09:54:22,248 | INFO     | sum of square deviations: 37838653091.99204
[2026-05-30 05:55:29] 2026-05-30 09:54:22,254 | INFO     | sum of deviations: -179942696914.5806
[2026-05-30 05:55:29] 2026-05-30 09:54:22,254 | INFO     | mean x (centered): 0.0
[2026-05-30 05:55:29] 2026-05-30 09:54:22,254 | INFO     | mean y: 2613250.209677419
[2026-05-30 05:55:29] 2026-05-30 09:54:22,254 | INFO     | intersect: 2613250.209677419
[2026-05-30 05:55:29] 2026-05-30 09:54:22,255 | INFO     | chi2: 2.0915759915639915
[2026-05-30 05:55:29] 2026-05-30 09:54:22,255 | INFO     | current chi2=2.0915759915639915 (change=59.37862903683079 %)
[2026-05-30 05:55:29] 2026-05-30 09:54:22,256 | INFO     | sum of square deviations: 36705794030.749435
[2026-05-30 05:55:29] 2026-05-30 09:54:22,325 | INFO     | sum of deviations: -208485321926.059
[2026-05-30 05:55:29] 2026-05-30 09:54:22,325 | INFO     | mean x (centered): 0.0
[2026-05-30 05:55:29] 2026-05-30 09:54:22,325 | INFO     | mean y: 2617087.1181262727
[2026-05-30 05:55:29] 2026-05-30 09:54:22,325 | INFO     | intersect: 2617087.1181262727
[2026-05-30 05:55:29] 2026-05-30 09:54:22,326 | INFO     | chi2: 1.9445583484095228
[2026-05-30 05:55:29] 2026-05-30 09:54:22,326 | INFO     | current chi2=1.9445583484095228 (change=7.029036656924677 %)
[2026-05-30 05:55:29] 2026-05-30 09:54:22,326 | INFO     | left removable region: 10
[2026-05-30 05:55:29] 2026-05-30 09:54:22,333 | INFO     | sum of square deviations: 34293776435.991768
[2026-05-30 05:55:29] 2026-05-30 09:54:22,354 | INFO     | sum of deviations: -140772760511.79993
[2026-05-30 05:55:29] 2026-05-30 09:54:22,354 | INFO     | mean x (centered): 0.0
[2026-05-30 05:55:29] 2026-05-30 09:54:22,355 | INFO     | mean y: 2626340.4
[2026-05-30 05:55:29] 2026-05-30 09:54:22,355 | INFO     | intersect: 2626340.4
[2026-05-30 05:55:29] 2026-05-30 09:54:22,355 | INFO     | chi2: 0.5362226159370436
[2026-05-30 05:55:29] 2026-05-30 09:54:22,356 | INFO     | current memory leak: -4.10 B/s (using 480 data points, chi2=0.54)
[2026-05-30 05:55:29] 2026-05-30 09:54:22,356 | INFO     | could have reported an average CPU frequency of 2940 MHz (20 samples)
[2026-05-30 05:55:29] 2026-05-30 09:54:22,357 | INFO     | ..............................
[2026-05-30 05:55:29] 2026-05-30 09:54:22,357 | INFO     | . Timing measurements:
[2026-05-30 05:55:29] 2026-05-30 09:54:22,357 | INFO     | . get job = 0 s
[2026-05-30 05:55:29] 2026-05-30 09:54:22,357 | INFO     | . initial setup = 37 s
[2026-05-30 05:55:29] 2026-05-30 09:54:22,357 | INFO     | . payload setup = 88 s
[2026-05-30 05:55:29] 2026-05-30 09:54:22,357 | INFO     | . stage-in = 0 s
[2026-05-30 05:55:29] 2026-05-30 09:54:22,357 | INFO     | . payload execution = 30586 s
[2026-05-30 05:55:29] 2026-05-30 09:54:22,357 | INFO     | . stage-out = 5 s
[2026-05-30 05:55:29] 2026-05-30 09:54:22,357 | INFO     | . log creation = 0 s
[2026-05-30 05:55:29] 2026-05-30 09:54:22,357 | INFO     | ..............................
[2026-05-30 05:55:29] 2026-05-30 09:54:22,597 | INFO     | 
[2026-05-30 05:55:29] 2026-05-30 09:54:22,597 | INFO     | job summary report
[2026-05-30 05:55:29] 2026-05-30 09:54:22,597 | INFO     | --------------------------------------------------
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | PanDA job id: 7157469451
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | task id: 50533925
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | errors: (none)
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | pilot state: finished 
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | transexitcode: 0
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | exeerrorcode: 0
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | exeerrordiag: 
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | exitcode: 0
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | exitmsg: OK
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | cpuconsumptiontime: 51836 s
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | nevents: 400
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | neventsw: 0
[2026-05-30 05:55:29] 2026-05-30 09:54:22,598 | INFO     | pid: 1619144
[2026-05-30 05:55:29] 2026-05-30 09:54:22,599 | INFO     | pgrp: 1619144
[2026-05-30 05:55:29] 2026-05-30 09:54:22,599 | INFO     | corecount: 9
[2026-05-30 05:55:29] 2026-05-30 09:54:22,599 | INFO     | event service: False
[2026-05-30 05:55:29] 2026-05-30 09:54:22,599 | INFO     | sizes: {0: 2265710, 1: 2265738, 2: 2265738, 3: 2267539, 4: 2267567, 15: 2267595, 30680: 2305367, 30682: 2305366, 30689: 2314420, 30691: 2314476, 30693: 2314670}
[2026-05-30 05:55:29] 2026-05-30 09:54:22,599 | INFO     | --------------------------------------------------
[2026-05-30 05:55:29] 2026-05-30 09:54:22,599 | INFO     | 
[2026-05-30 05:55:29] 2026-05-30 09:54:22,599 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-05-30 05:55:29] 2026-05-30 09:54:22,678 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,678 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,678 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,678 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,678 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,678 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,678 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,678 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,679 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,679 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,679 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,679 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,679 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,679 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,679 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,679 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,679 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,679 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-30 05:55:29] 2026-05-30 09:54:22,679 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,679 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-30 05:55:29] 2026-05-30 09:54:22,680 | INFO     | job 7157469451 has completed (purged errors)
[2026-05-30 05:55:29] 2026-05-30 09:54:22,680 | INFO     | overall cleanup function is called
[2026-05-30 05:55:29] 2026-05-30 09:54:23,508 | INFO     | PID=1585882 has CPU usage=14.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-05-30 05:55:29] 2026-05-30 09:54:23,508 | INFO     | .. there are 87 such processes running
[2026-05-30 05:55:29] 2026-05-30 09:54:23,704 | INFO     | --- collectZombieJob: --- 10, [1619144]
[2026-05-30 05:55:29] 2026-05-30 09:54:23,704 | INFO     | zombie collector waiting for pid 1619144
[2026-05-30 05:55:29] 2026-05-30 09:54:23,704 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-30 05:55:29] 2026-05-30 09:54:23,704 | INFO     | collected zombie processes
[2026-05-30 05:55:29] 2026-05-30 09:54:23,705 | INFO     | will attempt to kill all subprocesses of pid=1619144
[2026-05-30 05:55:29] 2026-05-30 09:54:25,369 | INFO     | process IDs to be killed: [1619144] (in reverse order)
[2026-05-30 05:55:29] 2026-05-30 09:54:25,778 | WARNING  | found no corresponding commands to process id(s)
[2026-05-30 05:55:29] 2026-05-30 09:54:25,778 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-30 05:55:29] 2026-05-30 09:54:25,880 | INFO     | did not find any defunct processes belonging to 1619144
[2026-05-30 05:55:29] 2026-05-30 09:54:25,933 | INFO     | did not find any defunct processes belonging to 1619144
[2026-05-30 05:55:29] 2026-05-30 09:54:25,933 | INFO     | Ready for new job
[2026-05-30 05:55:29] 2026-05-30 09:54:25,936 | INFO     | ***************************************
[2026-05-30 05:55:29] 2026-05-30 09:54:25,936 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-30 05:55:29] 2026-05-30 09:54:25,936 | INFO     | ***************************************
[2026-05-30 05:55:29] 2026-05-30 09:54:25,936 | INFO     | 
[2026-05-30 05:55:29] 2026-05-30 09:54:25,940 | INFO     | architecture information:
[2026-05-30 05:55:29] 2026-05-30 09:54:25,941 | INFO     | executing command: cat /etc/os-release
[2026-05-30 05:55:29] 2026-05-30 09:54:25,993 | INFO     | cat /etc/os-release:
[2026-05-30 05:55:29] NAME="CentOS Linux"
[2026-05-30 05:55:29] VERSION="7 (Core)"
[2026-05-30 05:55:29] ID="centos"
[2026-05-30 05:55:29] ID_LIKE="rhel fedora"
[2026-05-30 05:55:29] VERSION_ID="7"
[2026-05-30 05:55:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-30 05:55:29] ANSI_COLOR="0;31"
[2026-05-30 05:55:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-30 05:55:29] HOME_URL="https://www.centos.org/"
[2026-05-30 05:55:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-30 05:55:29] 
[2026-05-30 05:55:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-30 05:55:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-30 05:55:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-30 05:55:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-30 05:55:29] 
[2026-05-30 05:55:29] 2026-05-30 09:54:25,993 | INFO     | ***************************************
[2026-05-30 05:55:29] 2026-05-30 09:54:26,496 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-05-30 05:55:29] 2026-05-30 09:54:26,596 | INFO     | sufficient remaining disk space (103684243456 B)
[2026-05-30 05:55:29] 2026-05-30 09:54:26,597 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-30 05:55:29] 2026-05-30 09:54:26,597 | INFO     | current server update state: UPDATING_FINAL
[2026-05-30 05:55:29] 2026-05-30 09:54:26,597 | INFO     | update_server=False
[2026-05-30 05:55:29] 2026-05-30 09:54:26,597 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-30 05:55:29] 2026-05-30 09:54:26,600 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-30 05:55:29] 2026-05-30 09:54:26,614 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-30 05:55:29] 2026-05-30 09:54:26,614 | INFO     | aborting loop
[2026-05-30 05:55:29] 2026-05-30 09:54:26,966 | INFO     | all data control threads have been joined
[2026-05-30 05:55:29] 2026-05-30 09:54:27,176 | INFO     | all job control threads have been joined
[2026-05-30 05:55:29] 2026-05-30 09:54:27,198 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-30 05:55:29] 2026-05-30 09:54:27,379 | INFO     | all payload control threads have been joined
[2026-05-30 05:55:29] 2026-05-30 09:54:27,603 | INFO     | [job] retrieve thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:27,619 | INFO     | [job] job monitor thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:27,651 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-30 05:55:29] 2026-05-30 09:54:27,767 | INFO     | [job] create_data_payload thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:27,983 | INFO     | [data] control thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:28,182 | INFO     | [job] control thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:28,241 | INFO     | [job] validate thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:28,242 | INFO     | [payload] validate_pre thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:28,247 | INFO     | [data] copytool_in thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:28,248 | INFO     | [payload] execute_payloads thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:28,400 | INFO     | [payload] control thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:28,575 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:28,672 | INFO     | [job] queue monitor thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:29,199 | INFO     | [payload] validate_post thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:29,199 | INFO     | [payload] failed_post thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:29,214 | INFO     | [data] copytool_out thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:30,658 | INFO     | [data] queue_monitor thread has finished
[2026-05-30 05:55:29] 2026-05-30 09:54:34,045 | INFO     | [monitor] cgroup control has ended
[2026-05-30 05:55:29] 2026-05-30 09:54:35,405 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140627580872512)>', '<ExcThread(monitor, started 140627136202496)>']
[2026-05-30 05:55:29] 2026-05-30 09:54:40,431 | INFO     | all workflow threads have been joined
[2026-05-30 05:55:29] 2026-05-30 09:54:40,468 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-30 05:55:29] 2026-05-30 09:54:40,469 | INFO     | traces error code: 0
[2026-05-30 05:55:29] 2026-05-30 09:54:40,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-30 05:55:29] 2026-05-30 09:55:06,532 | INFO     | PID=1585882 has CPU usage=5.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-30 05:55:29] 2026-05-30 09:55:06,532 | INFO     | .. there are 87 such processes running
[2026-05-30 05:55:29] 2026-05-30 09:55:06,537 | INFO     | found 0 job(s) in 20 queues
[2026-05-30 05:55:29] 2026-05-30 09:55:06,537 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-30 05:55:29] 2026-05-30 09:55:06,537 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-30 05:55:29] 2026-05-30 09:55:06,537 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-30 05:55:29] 2026-05-30 09:55:06,537 | INFO     | [monitor] control thread has ended
[2026-05-30 05:55:29] 2026-05-30 09:55:06,987 [wrapper] ==== pilot stdout END ====
[2026-05-30 05:55:29] 2026-05-30 09:55:07,040 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-30 05:55:29] 2026-05-30 09:55:07,158 [wrapper] pilotpid: 1585882
[2026-05-30 05:55:29] 2026-05-30 09:55:07,164 [wrapper] Pilot exit status: 0
[2026-05-30 05:55:29] 2026-05-30 09:55:07,242 [wrapper] pandaids: 7157469451
[2026-05-30 05:55:29] 2026-05-30 09:55:08,655 [wrapper] cleanup supervisor_pilot  708084 1585883
[2026-05-30 05:55:29] 2026-05-30 09:55:08,687 [wrapper] Test setup, not cleaning
[2026-05-30 05:55:29] 2026-05-30 09:55:08,722 [wrapper] apfmon messages muted
[2026-05-30 05:55:29] 2026-05-30 09:55:08,735 [wrapper] ==== wrapper stdout END ====
[2026-05-30 05:55:29] 2026-05-30 09:55:08,753 [wrapper] ==== wrapper stderr END ====
[2026-05-30 05:55:29]  *** Error codes and diagnostics ***
[2026-05-30 05:55:29]     "exeErrorCode": 0,
[2026-05-30 05:55:29]     "pilotErrorCode": 0,
[2026-05-30 05:55:29]  *** Listing of results directory ***
[2026-05-30 05:55:29] total 521048
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas      5631 May 29 11:58 queuedata.json
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas    683926 May 29 11:58 pilot3.tar.gz
[2026-05-30 05:55:29] -rwx------. 1 boincer umatlas     36281 May 29 11:58 runpilot2-wrapper.sh
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas       100 May 29 21:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-30 05:55:29] -rwxr-xr-x. 1 boincer umatlas      7986 May 29 21:20 run_atlas
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas       105 May 29 21:20 job.xml
[2026-05-30 05:55:29] -rw-r--r--. 2 boincer umatlas 296818154 May 29 21:20 EVNT.50469837._000500.pool.root.1
[2026-05-30 05:55:29] -rw-r--r--. 2 boincer umatlas     15667 May 29 21:20 start_atlas.sh
[2026-05-30 05:55:29] drwxrwx--x. 2 boincer umatlas      4096 May 29 21:20 shared
[2026-05-30 05:55:29] -rw-r--r--. 2 boincer umatlas    697415 May 29 21:20 input.tar.gz
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas         0 May 29 21:20 boinc_lockfile
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas      2514 May 29 21:20 pandaJob.out
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas        57 May 29 21:20 setup.sh.local
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas    995587 May 29 21:21 agis_schedconf.cvmfs.json
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas       438 May 29 21:22 workernode_map.json
[2026-05-30 05:55:29] drwx------. 5 boincer umatlas      4096 May 29 21:22 pilot3
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas      6757 May 30 05:46 init_data.xml
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas 227378420 May 30 05:51 HITS.50533925._012499.pool.root.1
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas       489 May 30 05:51 boinc_task_state.xml
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas      1046 May 30 05:54 memory_monitor_summary.json
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas   1502789 May 30 05:54 agis_ddmendpoints.agis.ALL.json
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas    536113 May 30 05:54 log.50533925._012499.job.log.tgz.1
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas      6408 May 30 05:54 heartbeat_new.json
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas      6299 May 30 05:54 heartbeat.json
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas        95 May 30 05:55 pilot_heartbeat.json
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas       823 May 30 05:55 pilotlog.txt
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas   2081679 May 30 05:55 log.50533925._012499.job.log.1
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas       357 May 30 05:55 output.list
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas       410 May 30 05:55 runtime_log
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas   2631680 May 30 05:55 result.tar.gz
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas      8950 May 30 05:55 runtime_log.err
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas       655 May 30 05:55 b7ba2d400943.diag
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas      8192 May 30 05:55 boinc_mmap_file
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas        28 May 30 05:55 wrapper_checkpoint.txt
[2026-05-30 05:55:29] -rw-r--r--. 1 boincer umatlas     21170 May 30 05:55 stderr.txt
[2026-05-30 05:55:29] HITS file was successfully produced:
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas 227378420 May 30 05:51 shared/HITS.pool.root.1
[2026-05-30 05:55:29]  *** Contents of shared directory: ***
[2026-05-30 05:55:29] total 515192
[2026-05-30 05:55:29] -rw-r--r--. 2 boincer umatlas 296818154 May 29 21:20 ATLAS.root_0
[2026-05-30 05:55:29] -rw-r--r--. 2 boincer umatlas     15667 May 29 21:20 start_atlas.sh
[2026-05-30 05:55:29] -rw-r--r--. 2 boincer umatlas    697415 May 29 21:20 input.tar.gz
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas 227378420 May 30 05:51 HITS.pool.root.1
[2026-05-30 05:55:29] -rw-------. 1 boincer umatlas   2631680 May 30 05:55 result.tar.gz
05:55:31 (1565232): run_atlas exited; CPU time 53656.557502
05:55:31 (1565232): called boinc_finish(0)

</stderr_txt>
]]>

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