Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:56:33 (21876): wrapper (7.7.26015): starting
12:56:33 (21876): wrapper: running run_atlas (--nthreads 8)
[2026-05-30 12:56:33] Arguments: --nthreads 8
[2026-05-30 12:56:33] Threads: 8
[2026-05-30 12:56:33] Checking for CVMFS
[2026-05-30 12:56:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-30 12:56:37] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-30 12:56:37] Running cvmfs_config stat atlas.cern.ch
[2026-05-30 12:56:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-30 12:56:39] 2.11.2.0 28827 64447 128328 159964 2 54 13845583 25165824 96 130560 0 26093218 99.874 19535869 6141 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-30 12:56:39] CVMFS is ok
[2026-05-30 12:56:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-30 12:56:39] Checking for apptainer binary...
[2026-05-30 12:56:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-30 12:56:39] Running /usr/bin/apptainer --version
[2026-05-30 12:56:39] apptainer version 1.3.2-1.el7
[2026-05-30 12:56:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-30 12:57:04] cg-vwn243.simple-grid.lan
[2026-05-30 12:57:04] apptainer works
[2026-05-30 12:57:04] Set ATHENA_PROC_NUMBER=8
[2026-05-30 12:57:04] Set ATHENA_CORE_NUMBER=8
[2026-05-30 12:57:04] Starting ATLAS job with PandaID=7157814850
[2026-05-30 12:57:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-30 16:54:44]  *** The last 200 lines of the pilot log: ***
[2026-05-30 16:54:44] 2026-05-30 14:53:50,464 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7157814850/memory_monitor_summary.json (trf name=prmon)
[2026-05-30 16:54:44] 2026-05-30 14:53:50,465 | INFO     | extracted standard info from prmon json
[2026-05-30 16:54:44] 2026-05-30 14:53:50,465 | INFO     | extracted standard memory fields from prmon json
[2026-05-30 16:54:44] 2026-05-30 14:53:50,466 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-30 16:54:44] 2026-05-30 14:53:50,466 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-30 16:54:44] 2026-05-30 14:53:50,471 | INFO     | fitting pss+swap vs Time
[2026-05-30 16:54:44] 2026-05-30 14:53:50,471 | INFO     | sum of square deviations: 3392567795.5
[2026-05-30 16:54:44] 2026-05-30 14:53:50,473 | INFO     | sum of deviations: 101490518298.50002
[2026-05-30 16:54:44] 2026-05-30 14:53:50,473 | INFO     | mean x (centered): 0.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,473 | INFO     | mean y: 2449962.220720721
[2026-05-30 16:54:44] 2026-05-30 14:53:50,474 | INFO     | intersect: 2449962.220720721
[2026-05-30 16:54:44] 2026-05-30 14:53:50,474 | INFO     | chi2: 9.435484418877797
[2026-05-30 16:54:44] 2026-05-30 14:53:50,475 | INFO     | sum of square deviations: 3168461268.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,476 | INFO     | sum of deviations: 114054008118.00002
[2026-05-30 16:54:44] 2026-05-30 14:53:50,477 | INFO     | mean x (centered): 0.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,477 | INFO     | mean y: 2458327.658986175
[2026-05-30 16:54:44] 2026-05-30 14:53:50,477 | INFO     | intersect: 2458327.658986175
[2026-05-30 16:54:44] 2026-05-30 14:53:50,477 | INFO     | chi2: 8.757072337334195
[2026-05-30 16:54:44] 2026-05-30 14:53:50,477 | INFO     | current chi2=8.757072337334195 (change=7.1900079680730205 %)
[2026-05-30 16:54:44] 2026-05-30 14:53:50,478 | INFO     | right removable region: 216
[2026-05-30 16:54:44] 2026-05-30 14:53:50,478 | INFO     | sum of square deviations: 3168461268.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,480 | INFO     | sum of deviations: 23008759214.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,480 | INFO     | mean x (centered): 0.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,480 | INFO     | mean y: 2503335.465437788
[2026-05-30 16:54:44] 2026-05-30 14:53:50,480 | INFO     | intersect: 2503335.465437788
[2026-05-30 16:54:44] 2026-05-30 14:53:50,481 | INFO     | chi2: 4.138582775455642
[2026-05-30 16:54:44] 2026-05-30 14:53:50,481 | INFO     | current chi2=4.138582775455642 (change=56.13809962766213 %)
[2026-05-30 16:54:44] 2026-05-30 14:53:50,481 | INFO     | sum of square deviations: 2954447953.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,483 | INFO     | sum of deviations: -39437806681.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,483 | INFO     | mean x (centered): 0.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,483 | INFO     | mean y: 2547796.613207547
[2026-05-30 16:54:44] 2026-05-30 14:53:50,483 | INFO     | intersect: 2547796.613207547
[2026-05-30 16:54:44] 2026-05-30 14:53:50,484 | INFO     | chi2: 1.0652800740139434
[2026-05-30 16:54:44] 2026-05-30 14:53:50,484 | INFO     | current chi2=1.0652800740139434 (change=74.25978573313276 %)
[2026-05-30 16:54:44] 2026-05-30 14:53:50,484 | INFO     | sum of square deviations: 2750295288.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,486 | INFO     | sum of deviations: -51127900543.99998
[2026-05-30 16:54:44] 2026-05-30 14:53:50,486 | INFO     | mean x (centered): 0.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,486 | INFO     | mean y: 2556449.0289855073
[2026-05-30 16:54:44] 2026-05-30 14:53:50,486 | INFO     | intersect: 2556449.0289855073
[2026-05-30 16:54:44] 2026-05-30 14:53:50,487 | INFO     | chi2: 0.8743683931091492
[2026-05-30 16:54:44] 2026-05-30 14:53:50,487 | INFO     | current chi2=0.8743683931091492 (change=17.921266487736393 %)
[2026-05-30 16:54:44] 2026-05-30 14:53:50,487 | INFO     | left removable region: 15
[2026-05-30 16:54:44] 2026-05-30 14:53:50,487 | INFO     | sum of square deviations: 2518000700.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,489 | INFO     | sum of deviations: -35805662392.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,489 | INFO     | mean x (centered): 0.0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,489 | INFO     | mean y: 2568255.368159204
[2026-05-30 16:54:44] 2026-05-30 14:53:50,489 | INFO     | intersect: 2568255.368159204
[2026-05-30 16:54:44] 2026-05-30 14:53:50,490 | INFO     | chi2: 0.08025362777236844
[2026-05-30 16:54:44] 2026-05-30 14:53:50,490 | INFO     | current memory leak: -14.22 B/s (using 201 data points, chi2=0.08)
[2026-05-30 16:54:44] 2026-05-30 14:53:50,490 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-05-30 16:54:44] 2026-05-30 14:53:50,491 | INFO     | ..............................
[2026-05-30 16:54:44] 2026-05-30 14:53:50,491 | INFO     | . Timing measurements:
[2026-05-30 16:54:44] 2026-05-30 14:53:50,491 | INFO     | . get job = 0 s
[2026-05-30 16:54:44] 2026-05-30 14:53:50,491 | INFO     | . initial setup = 119 s
[2026-05-30 16:54:44] 2026-05-30 14:53:50,491 | INFO     | . payload setup = 191 s
[2026-05-30 16:54:44] 2026-05-30 14:53:50,491 | INFO     | . stage-in = 0 s
[2026-05-30 16:54:44] 2026-05-30 14:53:50,491 | INFO     | . payload execution = 13625 s
[2026-05-30 16:54:44] 2026-05-30 14:53:50,491 | INFO     | . stage-out = 5 s
[2026-05-30 16:54:44] 2026-05-30 14:53:50,492 | INFO     | . log creation = 1 s
[2026-05-30 16:54:44] 2026-05-30 14:53:50,492 | INFO     | ..............................
[2026-05-30 16:54:44] 2026-05-30 14:53:50,725 | INFO     | 
[2026-05-30 16:54:44] 2026-05-30 14:53:50,725 | INFO     | job summary report
[2026-05-30 16:54:44] 2026-05-30 14:53:50,725 | INFO     | --------------------------------------------------
[2026-05-30 16:54:44] 2026-05-30 14:53:50,725 | INFO     | PanDA job id: 7157814850
[2026-05-30 16:54:44] 2026-05-30 14:53:50,726 | INFO     | task id: 49545102
[2026-05-30 16:54:44] 2026-05-30 14:53:50,726 | INFO     | errors: (none)
[2026-05-30 16:54:44] 2026-05-30 14:53:50,726 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-30 16:54:44] 2026-05-30 14:53:50,726 | INFO     | pilot state: finished 
[2026-05-30 16:54:44] 2026-05-30 14:53:50,726 | INFO     | transexitcode: 0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,726 | INFO     | exeerrorcode: 0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,726 | INFO     | exeerrordiag: 
[2026-05-30 16:54:44] 2026-05-30 14:53:50,726 | INFO     | exitcode: 0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,726 | INFO     | exitmsg: OK
[2026-05-30 16:54:44] 2026-05-30 14:53:50,726 | INFO     | cpuconsumptiontime: 50835 s
[2026-05-30 16:54:44] 2026-05-30 14:53:50,727 | INFO     | nevents: 400
[2026-05-30 16:54:44] 2026-05-30 14:53:50,727 | INFO     | neventsw: 0
[2026-05-30 16:54:44] 2026-05-30 14:53:50,727 | INFO     | pid: 30373
[2026-05-30 16:54:44] 2026-05-30 14:53:50,727 | INFO     | pgrp: 30373
[2026-05-30 16:54:44] 2026-05-30 14:53:50,727 | INFO     | corecount: 8
[2026-05-30 16:54:44] 2026-05-30 14:53:50,727 | INFO     | event service: False
[2026-05-30 16:54:44] 2026-05-30 14:53:50,727 | INFO     | sizes: {0: 2265780, 1: 2266237, 2: 2267665, 12: 2267693, 13821: 2298080, 13827: 2307428}
[2026-05-30 16:54:44] 2026-05-30 14:53:50,727 | INFO     | --------------------------------------------------
[2026-05-30 16:54:44] 2026-05-30 14:53:50,727 | INFO     | 
[2026-05-30 16:54:44] 2026-05-30 14:53:50,728 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-05-30 16:54:44] 2026-05-30 14:53:50,749 | INFO     | PID=25867 has CPU usage=8.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-30 16:54:44] 2026-05-30 14:53:50,749 | INFO     | .. there are 2 such processes running
[2026-05-30 16:54:44] 2026-05-30 14:53:51,212 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,213 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,213 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,213 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,213 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,213 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,213 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,213 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,214 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,214 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,214 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,214 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,214 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,214 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,214 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,214 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,214 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,215 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-30 16:54:44] 2026-05-30 14:53:51,215 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,215 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-30 16:54:44] 2026-05-30 14:53:51,215 | INFO     | job 7157814850 has completed (purged errors)
[2026-05-30 16:54:44] 2026-05-30 14:53:51,215 | INFO     | overall cleanup function is called
[2026-05-30 16:54:44] 2026-05-30 14:53:52,224 | INFO     | --- collectZombieJob: --- 10, [30373]
[2026-05-30 16:54:44] 2026-05-30 14:53:52,224 | INFO     | zombie collector waiting for pid 30373
[2026-05-30 16:54:44] 2026-05-30 14:53:52,224 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-30 16:54:44] 2026-05-30 14:53:52,224 | INFO     | collected zombie processes
[2026-05-30 16:54:44] 2026-05-30 14:53:52,225 | INFO     | will attempt to kill all subprocesses of pid=30373
[2026-05-30 16:54:44] 2026-05-30 14:53:52,304 | INFO     | process IDs to be killed: [30373] (in reverse order)
[2026-05-30 16:54:44] 2026-05-30 14:53:53,139 | WARNING  | found no corresponding commands to process id(s)
[2026-05-30 16:54:44] 2026-05-30 14:53:53,139 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-30 16:54:44] 2026-05-30 14:53:53,141 | INFO     | did not find any defunct processes belonging to 30373
[2026-05-30 16:54:44] 2026-05-30 14:53:53,143 | INFO     | did not find any defunct processes belonging to 30373
[2026-05-30 16:54:44] 2026-05-30 14:53:53,144 | INFO     | Ready for new job
[2026-05-30 16:54:44] 2026-05-30 14:53:53,145 | INFO     | ***************************************
[2026-05-30 16:54:44] 2026-05-30 14:53:53,146 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-30 16:54:44] 2026-05-30 14:53:53,146 | INFO     | ***************************************
[2026-05-30 16:54:44] 2026-05-30 14:53:53,146 | INFO     | 
[2026-05-30 16:54:44] 2026-05-30 14:53:53,146 | INFO     | pilot is running in a VM
[2026-05-30 16:54:44] 2026-05-30 14:53:53,147 | INFO     | architecture information:
[2026-05-30 16:54:44] 2026-05-30 14:53:53,160 | INFO     | executing command: cat /etc/os-release
[2026-05-30 16:54:44] 2026-05-30 14:53:53,510 | INFO     | cat /etc/os-release:
[2026-05-30 16:54:44] NAME="CentOS Linux"
[2026-05-30 16:54:44] VERSION="7 (Core)"
[2026-05-30 16:54:44] ID="centos"
[2026-05-30 16:54:44] ID_LIKE="rhel fedora"
[2026-05-30 16:54:44] VERSION_ID="7"
[2026-05-30 16:54:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-30 16:54:44] ANSI_COLOR="0;31"
[2026-05-30 16:54:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-30 16:54:44] HOME_URL="https://www.centos.org/"
[2026-05-30 16:54:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-30 16:54:44] 
[2026-05-30 16:54:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-30 16:54:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-30 16:54:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-30 16:54:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-30 16:54:44] 
[2026-05-30 16:54:44] 2026-05-30 14:53:53,510 | INFO     | ***************************************
[2026-05-30 16:54:44] 2026-05-30 14:53:54,013 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-05-30 16:54:44] 2026-05-30 14:53:54,284 | INFO     | sufficient remaining disk space (496729325568 B)
[2026-05-30 16:54:44] 2026-05-30 14:53:54,285 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-30 16:54:44] 2026-05-30 14:53:54,285 | INFO     | current server update state: UPDATING_FINAL
[2026-05-30 16:54:44] 2026-05-30 14:53:54,285 | INFO     | update_server=False
[2026-05-30 16:54:44] 2026-05-30 14:53:54,285 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-30 16:54:44] 2026-05-30 14:53:54,286 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-30 16:54:44] 2026-05-30 14:53:54,682 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-30 16:54:44] 2026-05-30 14:53:54,682 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-30 16:54:44] 2026-05-30 14:53:54,682 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-30 16:54:44] 2026-05-30 14:53:54,683 | INFO     | will abort loop
[2026-05-30 16:54:44] 2026-05-30 14:53:54,740 | INFO     | all payload control threads have been joined
[2026-05-30 16:54:44] 2026-05-30 14:53:55,102 | INFO     | all data control threads have been joined
[2026-05-30 16:54:44] 2026-05-30 14:53:55,291 | INFO     | [job] retrieve thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:55,642 | INFO     | [job] create_data_payload thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:55,688 | INFO     | [job] job monitor thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:55,732 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-30 16:54:44] 2026-05-30 14:53:55,746 | INFO     | [payload] control thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:55,749 | INFO     | all job control threads have been joined
[2026-05-30 16:54:44] 2026-05-30 14:53:55,780 | INFO     | [job] validate thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:56,025 | INFO     | [payload] execute_payloads thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:56,108 | INFO     | [data] control thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:56,148 | INFO     | [payload] validate_pre thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:56,293 | INFO     | [data] copytool_out thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:56,408 | INFO     | [data] copytool_in thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:56,469 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-30 16:54:44] 2026-05-30 14:53:56,686 | INFO     | [payload] failed_post thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:56,734 | INFO     | [payload] validate_post thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:56,738 | INFO     | [job] queue monitor thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:53:56,755 | INFO     | [job] control thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:54:00,478 | INFO     | [data] queue_monitor thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:54:05,273 | INFO     | job.realtimelogging is not enabled
[2026-05-30 16:54:44] 2026-05-30 14:54:06,279 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-30 16:54:44] 2026-05-30 14:54:22,872 | INFO     | PID=25867 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-30 16:54:44] 2026-05-30 14:54:22,872 | INFO     | .. there are 2 such processes running
[2026-05-30 16:54:44] 2026-05-30 14:54:22,881 | INFO     | found 0 job(s) in 20 queues
[2026-05-30 16:54:44] 2026-05-30 14:54:22,881 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-30 16:54:44] 2026-05-30 14:54:22,881 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-30 16:54:44] 2026-05-30 14:54:34,016 | INFO     | [monitor] cgroup control has ended
[2026-05-30 16:54:44] 2026-05-30 14:54:34,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140243555776320)>', '<ExcThread(monitor, started 140242887632640)>']
[2026-05-30 16:54:44] 2026-05-30 14:54:34,953 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-30 16:54:44] 2026-05-30 14:54:34,953 | INFO     | [monitor] control thread has ended
[2026-05-30 16:54:44] 2026-05-30 14:54:39,117 | INFO     | all workflow threads have been joined
[2026-05-30 16:54:44] 2026-05-30 14:54:39,117 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-30 16:54:44] 2026-05-30 14:54:39,118 | INFO     | traces error code: 0
[2026-05-30 16:54:44] 2026-05-30 14:54:39,118 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-30 16:54:44] 2026-05-30 14:54:39,510 [wrapper] ==== pilot stdout END ====
[2026-05-30 16:54:44] 2026-05-30 14:54:39,622 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-30 16:54:44] 2026-05-30 14:54:39,706 [wrapper] pilotpid: 25867
[2026-05-30 16:54:44] 2026-05-30 14:54:39,817 [wrapper] Pilot exit status: 0
[2026-05-30 16:54:44] 2026-05-30 14:54:40,346 [wrapper] pandaids: 7157814850
[2026-05-30 16:54:44] 2026-05-30 14:54:41,440 [wrapper] cleanup supervisor_pilot  4605 25868
[2026-05-30 16:54:44] 2026-05-30 14:54:41,569 [wrapper] Test setup, not cleaning
[2026-05-30 16:54:44] 2026-05-30 14:54:41,660 [wrapper] apfmon messages muted
[2026-05-30 16:54:44] 2026-05-30 14:54:41,762 [wrapper] ==== wrapper stdout END ====
[2026-05-30 16:54:44] 2026-05-30 14:54:41,828 [wrapper] ==== wrapper stderr END ====
[2026-05-30 16:54:44]  *** Error codes and diagnostics ***
[2026-05-30 16:54:44]     "exeErrorCode": 0,
[2026-05-30 16:54:44]     "pilotErrorCode": 0,
[2026-05-30 16:54:44]  *** Listing of results directory ***
[2026-05-30 16:54:44] total 436392
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc    683926 May 29 22:17 pilot3.tar.gz
[2026-05-30 16:54:44] -rwx------. 1 boinc boinc     36281 May 29 22:20 runpilot2-wrapper.sh
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc      5631 May 29 22:20 queuedata.json
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc       100 May 30 12:56 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-30 16:54:44] -rwxr-xr-x. 1 boinc boinc      7986 May 30 12:56 run_atlas
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc       105 May 30 12:56 job.xml
[2026-05-30 16:54:44] -rw-r--r--. 2 boinc boinc 267677418 May 30 12:56 EVNT.49539563._000834.pool.root.1
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc      6306 May 30 12:56 init_data.xml
[2026-05-30 16:54:44] -rw-r--r--. 2 boinc boinc     15667 May 30 12:56 start_atlas.sh
[2026-05-30 16:54:44] drwxrwx--x. 2 boinc boinc        68 May 30 12:56 shared
[2026-05-30 16:54:44] -rw-r--r--. 2 boinc boinc    697423 May 30 12:56 input.tar.gz
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc         0 May 30 12:56 boinc_lockfile
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc      2568 May 30 12:57 pandaJob.out
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc       415 May 30 13:03 workernode_map.json
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc    995230 May 30 13:03 agis_schedconf.cvmfs.json
[2026-05-30 16:54:44] drwx------. 5 boinc boinc      4096 May 30 13:03 pilot3
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc 171739745 May 30 16:52 HITS.49545102._021326.pool.root.1
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc       488 May 30 16:52 boinc_task_state.xml
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc      1016 May 30 16:53 memory_monitor_summary.json
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc   1502789 May 30 16:53 agis_ddmendpoints.agis.ALL.json
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc    382014 May 30 16:53 log.49545102._021326.job.log.tgz.1
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc      6347 May 30 16:53 heartbeat_new.json
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc      6238 May 30 16:53 heartbeat.json
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc      8192 May 30 16:54 boinc_mmap_file
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc        28 May 30 16:54 wrapper_checkpoint.txt
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc        95 May 30 16:54 pilot_heartbeat.json
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc      5141 May 30 16:54 pilotlog.txt
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc   1289152 May 30 16:54 log.49545102._021326.job.log.1
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc       357 May 30 16:54 output.list
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc       410 May 30 16:54 runtime_log
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc   1689600 May 30 16:54 result.tar.gz
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc      8439 May 30 16:54 runtime_log.err
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc       656 May 30 16:54 f504c0e81bd1.diag
[2026-05-30 16:54:44] -rw-r--r--. 1 boinc boinc     20690 May 30 16:54 stderr.txt
[2026-05-30 16:54:44] HITS file was successfully produced:
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc 171739745 May 30 16:52 shared/HITS.pool.root.1
[2026-05-30 16:54:44]  *** Contents of shared directory: ***
[2026-05-30 16:54:44] total 431472
[2026-05-30 16:54:44] -rw-r--r--. 2 boinc boinc 267677418 May 30 12:56 ATLAS.root_0
[2026-05-30 16:54:44] -rw-r--r--. 2 boinc boinc     15667 May 30 12:56 start_atlas.sh
[2026-05-30 16:54:44] -rw-r--r--. 2 boinc boinc    697423 May 30 12:56 input.tar.gz
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc 171739745 May 30 16:52 HITS.pool.root.1
[2026-05-30 16:54:44] -rw-------. 1 boinc boinc   1689600 May 30 16:54 result.tar.gz
16:54:45 (21876): run_atlas exited; CPU time 50965.222904
16:54:45 (21876): called boinc_finish(0)

</stderr_txt>
]]>

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