Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
2026-05-29 17:38:33 (15328): vboxwrapper version 26210
2026-05-29 17:38:33 (15328): BOINC client version: 8.2.9
2026-05-29 17:38:34 (15328): Detected: VirtualBox VboxManage Interface (Version: 7.2.8)
2026-05-29 17:38:34 (15328): Successfully copied 'init_data.xml' to the shared directory.
2026-05-29 17:38:35 (15328): Create VM. (boinc_0281fde2f4e3c847, slot#0)
2026-05-29 17:38:35 (15328): Setting Memory Size for VM. (4400MB)
2026-05-29 17:38:36 (15328): Setting CPU Count for VM. (4)
2026-05-29 17:38:36 (15328): Setting Chipset Options for VM.
2026-05-29 17:38:36 (15328): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-05-29 17:38:36 (15328): Setting Boot Options for VM.
2026-05-29 17:38:37 (15328): Setting Network Configuration for NAT. (Driver: virtio)
2026-05-29 17:38:37 (15328): Enabling VM Network Access.
2026-05-29 17:38:37 (15328): Disabling USB Support for VM.
2026-05-29 17:38:38 (15328): Disabling COM Port Support for VM.
2026-05-29 17:38:38 (15328): Disabling LPT Port Support for VM.
2026-05-29 17:38:38 (15328): Disabling Audio Support for VM.
2026-05-29 17:38:38 (15328): Disabling Clipboard Support for VM.
2026-05-29 17:38:39 (15328): Disabling Drag and Drop Support for VM.
2026-05-29 17:38:39 (15328): Adding storage controller(s) to VM.
2026-05-29 17:38:39 (15328): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-05-29 17:38:41 (15328): Adding VirtualBox Guest Additions to VM.
2026-05-29 17:38:42 (15328): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-05-29 17:38:42 (15328): forwarding host port 60429 to guest port 80
2026-05-29 17:38:42 (15328): Enabling remote desktop for VM.
2026-05-29 17:38:42 (15328): Required extension pack not installed, remote desktop not enabled.
2026-05-29 17:38:42 (15328): Enabling shared directory for VM.
2026-05-29 17:38:43 (15328): Starting VM using VBoxManage interface. (boinc_0281fde2f4e3c847, slot#0)
2026-05-29 17:38:48 (15328): Successfully started VM. (PID = '10152')
2026-05-29 17:38:48 (15328): Reporting VM Process ID to BOINC.
2026-05-29 17:38:48 (15328): Guest Log: BIOS: VirtualBox 7.2.8
2026-05-29 17:38:48 (15328): Guest Log: CPUID EDX: 0x178bfbff
2026-05-29 17:38:48 (15328): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-05-29 17:38:48 (15328): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-05-29 17:38:48 (15328): VM state change detected. (old = 'poweredoff', new = 'running')
2026-05-29 17:38:48 (15328): Detected: Web Application Enabled (http://localhost:60429)
2026-05-29 17:38:48 (15328): Preference change detected
2026-05-29 17:38:48 (15328): Setting CPU throttle for VM. (100%)
2026-05-29 17:38:48 (15328): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-05-29 17:38:50 (15328): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-05-29 17:38:50 (15328): Guest Log: BIOS: Booting from Hard Disk...
2026-05-29 17:38:53 (15328): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-05-29 17:38:53 (15328): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-05-29 17:38:53 (15328): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-05-29 17:38:57 (15328): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-05-29 17:38:57 (15328): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-05-29 17:39:03 (15328): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-05-29 17:39:03 (15328): Guest Log: 00:00:00.000110 main     Log opened 2026-05-29T17:39:01.114545000Z
2026-05-29 17:39:03 (15328): Guest Log: 00:00:00.000243 main     OS Product: Linux
2026-05-29 17:39:03 (15328): Guest Log: 00:00:00.000288 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-05-29 17:39:03 (15328): Guest Log: 00:00:00.000330 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-05-29 17:39:03 (15328): Guest Log: 00:00:00.000372 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-05-29 17:39:03 (15328): Guest Log: 00:00:00.000373 main     Process ID: 1308
2026-05-29 17:39:03 (15328): Guest Log: 00:00:00.000374 main     Package type: LINUX_64BITS_GENERIC
2026-05-29 17:39:03 (15328): Guest Log: 00:00:00.001043 main     5.2.32 r132073 started. Verbose level = 0
2026-05-29 17:39:03 (15328): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-05-29 17:39:03 (15328): Guest Log: [INFO] Mounting shared directory
2026-05-29 17:39:03 (15328): Guest Log: [INFO] Checking for init_data.xml
2026-05-29 17:39:07 (15328): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-05-29 17:39:07 (15328): Guest Log: [INFO] Detected branch: prod
2026-05-29 17:39:07 (15328): Guest Log: This is the prod version of the ATLAS job wrapper
2026-05-29 17:39:07 (15328): Guest Log: Copying input files
2026-05-29 17:39:09 (15328): Guest Log: Copied input files into RunAtlas.
2026-05-29 17:39:09 (15328): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-05-29 17:39:09 (15328): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-05-29 17:39:09 (15328): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-05-29 17:39:09 (15328): Guest Log: Further information can be found at the LHC@home message board.
2026-05-29 17:39:13 (15328): Guest Log: 00:00:10.003738 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 012 068 490 000ns (GuestNow=1 780 094 353 185 306 000 ns GuestLast=1 780 076 341 116 816 000 ns fSetTimeLastLoop=true )
2026-05-29 17:39:24 (15328): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-05-29 17:39:24 (15328): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-05-29 17:39:24 (15328): Guest Log: 2.6.3.0 1606 0 32232 159947 4 1 3117654 4096001 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-05-29 17:39:25 (15328): Guest Log: copied the webapp to /var/www
2026-05-29 17:39:25 (15328): Guest Log: ATHENA_PROC_NUMBER=4
2026-05-29 17:39:25 (15328): Guest Log: ATHENA_CORE_NUMBER=4
2026-05-29 17:39:25 (15328): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-05-29 17:39:25 (15328): Guest Log:  *** Starting ATLAS job. (PandaID=7157569850 taskID=50533940) ***
2026-05-29 19:18:51 (15328): Status Report: Elapsed Time: '6000.000000'
2026-05-29 19:18:51 (15328): Status Report: CPU Time: '22021.234375'
2026-05-29 20:58:53 (15328): Status Report: Elapsed Time: '12000.000000'
2026-05-29 20:58:53 (15328): Status Report: CPU Time: '45305.234375'
2026-05-29 20:59:29 (15328): Guest Log:  *** Job finished ***
2026-05-29 20:59:29 (15328): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:58:50,169 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:58:50,169 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:17,594 | INFO     | [monitor] cgroup control has ended
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:18,490 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140365501339456)>', '<ExcThread(monitor, started 140365193520896)>']
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:19,429 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:19,430 | INFO     | [monitor] control thread has ended
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,495 | INFO     | all workflow threads have been joined
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,495 | INFO     | end of generic workflow (traces error code: 0)
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,496 | INFO     | traces error code: 0
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,496 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,595 [wrapper] ==== pilot stdout END ====
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,600 [wrapper] ==== wrapper stdout RESUME ====
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,606 [wrapper] pilotpid: 6010
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,612 [wrapper] Pilot exit status: 0
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,731 [wrapper] pandaids: 7157569850
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,771 [wrapper] cleanup supervisor_pilot 28033 6011
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,780 [wrapper] Test setup, not cleaning
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,785 [wrapper] apfmon messages muted
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,790 [wrapper] ==== wrapper stdout END ====
2026-05-29 20:59:29 (15328): Guest Log: 2026-05-30 01:59:23,795 [wrapper] ==== wrapper stderr END ====
2026-05-29 20:59:29 (15328): Guest Log:  *** Error codes and diagnostics ***
2026-05-29 20:59:29 (15328): Guest Log:     "exeErrorCode": 0,
2026-05-29 20:59:29 (15328): Guest Log:     "pilotErrorCode": 0,
2026-05-29 20:59:29 (15328): Guest Log:  *** Listing of results directory ***
2026-05-29 20:59:29 (15328): Guest Log: total 241900
2026-05-29 20:59:29 (15328): Guest Log: -rw-r--r--. 1 atlas atlas    683926 May 29 18:22 pilot3.tar.gz
2026-05-29 20:59:29 (15328): Guest Log: -rwx------. 1 atlas atlas     36281 May 29 18:22 runpilot2-wrapper.sh
2026-05-29 20:59:29 (15328): Guest Log: -rw-r--r--. 1 atlas atlas      5631 May 29 18:22 queuedata.json
2026-05-29 20:59:29 (15328): Guest Log: -rwxr-xr-x. 1 atlas atlas      8615 May 29 22:39 init_data.xml
2026-05-29 20:59:29 (15328): Guest Log: -rwxr-xr-x. 1 atlas atlas    697404 May 29 22:39 input.tar.gz
2026-05-29 20:59:29 (15328): Guest Log: -rwxr-xr-x. 1 atlas atlas     15667 May 29 22:39 start_atlas.sh
2026-05-29 20:59:29 (15328): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 29 22:39 EVNT.50532940._000116.pool.root.1 -> /data/./ATLAS.root_0
2026-05-29 20:59:29 (15328): Guest Log: -rw-r--r--. 1 atlas atlas      2512 May 29 22:39 pandaJob.out
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas    995587 May 29 22:40 agis_schedconf.cvmfs.json
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas       422 May 29 22:40 workernode_map.json
2026-05-29 20:59:29 (15328): Guest Log: drwx------. 5 atlas atlas      4096 May 29 22:41 pilot3
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas 240859510 May 30 01:57 HITS.50533940._001640.pool.root.1
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas        95 May 30 01:57 pilot_heartbeat.json
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas      1029 May 30 01:58 memory_monitor_summary.json
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas   1502789 May 30 01:58 agis_ddmendpoints.agis.ALL.json
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas    311650 May 30 01:58 log.50533940._001640.job.log.tgz.1
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas      6363 May 30 01:58 heartbeat_new.json
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas      6254 May 30 01:58 heartbeat.json
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas      4804 May 30 01:59 pilotlog.txt
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas   1083357 May 30 01:59 log.50533940._001640.job.log.1
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas       357 May 30 01:59 output.list
2026-05-29 20:59:29 (15328): Guest Log: -rw-r--r--. 1 atlas atlas       410 May 30 01:59 runtime_log
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas   1413120 May 30 01:59 result.tar.gz
2026-05-29 20:59:29 (15328): Guest Log: -rw-r--r--. 1 atlas atlas      8381 May 30 01:59 runtime_log.err
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas       660 May 30 01:59 d973f1523615.diag
2026-05-29 20:59:29 (15328): Guest Log: Looking for outputfile HITS.50533940._001640.pool.root.1
2026-05-29 20:59:29 (15328): Guest Log: HITS file was successfully produced
2026-05-29 20:59:29 (15328): Guest Log: -rw-------. 1 atlas atlas 240859510 May 30 01:57 /home/atlas/RunAtlas/HITS.50533940._001640.pool.root.1
2026-05-29 20:59:31 (15328): Guest Log: Successfully finished the ATLAS job!
2026-05-29 20:59:31 (15328): Guest Log: Copying the results back to the shared directory!
2026-05-29 20:59:31 (15328): Guest Log:  *** Contents of shared directory: ***
2026-05-29 20:59:31 (15328): Guest Log: total 543596
2026-05-29 20:59:31 (15328): Guest Log: -rwxrwxrwx. 1 root root 313636957 May 29 22:38 ATLAS.root_0
2026-05-29 20:59:31 (15328): Guest Log: -rwxrwxrwx. 1 root root 240859510 May 30  2026 HITS.pool.root.1
2026-05-29 20:59:31 (15328): Guest Log: -rwxrwxrwx. 1 root root      8615 May 29 22:38 init_data.xml
2026-05-29 20:59:31 (15328): Guest Log: -rwxrwxrwx. 1 root root    697404 May 29 22:26 input.tar.gz
2026-05-29 20:59:31 (15328): Guest Log: -rwxrwxrwx. 1 root root   1413120 May 30  2026 result.tar.gz
2026-05-29 20:59:31 (15328): Guest Log: -rwxrwxrwx. 1 root root     15667 May 29 22:26 start_atlas.sh
2026-05-29 20:59:31 (15328): Guest Log:  *** Success! Shutting down the machine. ***
2026-05-29 20:59:31 (15328): VM Completion File Detected.
2026-05-29 20:59:31 (15328): Powering off VM.
2026-05-29 20:59:32 (15328): Successfully stopped VM.
2026-05-29 20:59:32 (15328): Deregistering VM. (boinc_0281fde2f4e3c847, slot#0)
2026-05-29 20:59:32 (15328): Removing network bandwidth throttle group from VM.
2026-05-29 20:59:32 (15328): Removing VM from VirtualBox.
2026-05-29 20:59:38 (15328): called boinc_finish(0)

</stderr_txt>
]]>

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