Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
23:50:08 (692804): wrapper (7.7.26015): starting
23:50:08 (692804): wrapper: running run_atlas (--nthreads 12)
[2026-05-29 23:50:08] Arguments: --nthreads 12
[2026-05-29 23:50:08] Threads: 12
[2026-05-29 23:50:08] Checking for CVMFS
[2026-05-29 23:50:08] No cvmfs_config command found, will try listing directly
[2026-05-29 23:50:08] CVMFS is ok
[2026-05-29 23:50:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-29 23:50:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-29 23:50:08] Further information can be found at the LHC@home message board.
[2026-05-29 23:50:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-29 23:50:08] Checking for apptainer binary...
[2026-05-29 23:50:08] which: no apptainer in ((null))
[2026-05-29 23:50:08] apptainer is not installed, using version from CVMFS
[2026-05-29 23:50:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-29 23:50:08] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-05-29 23:50:08] apptainer works
[2026-05-29 23:50:08] Set ATHENA_PROC_NUMBER=12
[2026-05-29 23:50:08] Set ATHENA_CORE_NUMBER=12
[2026-05-29 23:50:08] Starting ATLAS job with PandaID=7157536337
[2026-05-29 23:50:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-30 00:17:49]  *** The last 200 lines of the pilot log: ***
[2026-05-30 00:17:49] ]
[2026-05-30 00:17:49] 2026-05-29 22:17:12,865 | INFO     | transferring file log.50533940._000477.job.log.tgz.1 from /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157536337/log.50533940._000477.job.log.tgz.1 to /var/lib/
[2026-05-30 00:17:49] 2026-05-29 22:17:12,866 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157536337/log.50533940._000477.job.log.tgz.1 /var/lib/boinc/var/slot120/slots/0/
[2026-05-30 00:17:49] 2026-05-29 22:17:12,879 | INFO     | adding to output.list: log.50533940._000477.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/21/07/log.50533940._000477.job.log.tg
[2026-05-30 00:17:49] 2026-05-29 22:17:12,880 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-30 00:17:49] 2026-05-29 22:17:12,880 | INFO     | summary of transferred files:
[2026-05-30 00:17:49] 2026-05-29 22:17:12,880 | INFO     |  -- lfn=log.50533940._000477.job.log.tgz.1, status_code=0, status=transferred
[2026-05-30 00:17:49] 2026-05-29 22:17:12,880 | INFO     | stage-out finished correctly
[2026-05-30 00:17:49] 2026-05-29 22:17:13,624 | WARNING  | process 703488 can no longer be monitored (due to stat problems) - aborting
[2026-05-30 00:17:49] 2026-05-29 22:17:13,624 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157536337/memory_monitor_summary.json (trf name=prmon)
[2026-05-30 00:17:49] 2026-05-29 22:17:13,625 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157536337/memory_monitor_summary.json (trf name=prmon)
[2026-05-30 00:17:49] 2026-05-29 22:17:13,625 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-05-30 00:17:49] 2026-05-29 22:17:13,625 | WARNING  | maxPSS not found in memory monitor output
[2026-05-30 00:17:49] 2026-05-29 22:17:13,625 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3758630 B
[2026-05-30 00:17:49] 2026-05-29 22:17:13,625 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15369 B
[2026-05-30 00:17:49] 2026-05-29 22:17:13,625 | INFO     | executing command: df -mP /var/lib/boinc/var/slot120/slots/0
[2026-05-30 00:17:49] 2026-05-29 22:17:13,640 | INFO     | sufficient remaining disk space (329947021312 B)
[2026-05-30 00:17:49] 2026-05-29 22:17:13,640 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-05-30 00:17:49] 2026-05-29 22:17:13,642 | INFO     | size of work directory /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157536337: 4037094 B (within 5033164800 B limit)
[2026-05-30 00:17:49] 2026-05-29 22:17:13,642 | INFO     | pfn file=/var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157536337/HITS.50533940._000477.pool.root.1 does not exist (skip from workdir size calculation)
[2026-05-30 00:17:49] 2026-05-29 22:17:13,642 | INFO     | total size of present files: 0 B (workdir size: 4037094 B)
[2026-05-30 00:17:49] 2026-05-29 22:17:13,642 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157536337/HITS.50533940._000477.pool.root.1 since it does not exist
[2026-05-30 00:17:49] 2026-05-29 22:17:13,824 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-30 00:17:49] 2026-05-29 22:17:13,870 | INFO     | number of running child processes to parent process 703488: 1
[2026-05-30 00:17:49] 2026-05-29 22:17:13,870 | INFO     | maximum number of monitored processes: 6
[2026-05-30 00:17:49] 2026-05-29 22:17:15,971 | INFO     | job 7157536337 has state=finished
[2026-05-30 00:17:49] 2026-05-29 22:17:15,972 | INFO     | preparing for final server update for job 7157536337 in state='finished'
[2026-05-30 00:17:49] 2026-05-29 22:17:16,373 | INFO     | monitor loop #126: job 0:7157536337 is in state 'finished'
[2026-05-30 00:17:49] 2026-05-29 22:17:16,373 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-30 00:17:49] 2026-05-29 22:17:16,521 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-05-30 00:17:49] 2026-05-29 22:17:16,521 | INFO     | reading metadata from: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157536337/jobReport.json
[2026-05-30 00:17:49] 2026-05-29 22:17:16,523 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot120/slots/0/workernode_map.json
[2026-05-30 00:17:49] 2026-05-29 22:17:16,523 | INFO     | this job has now completed (state=finished)
[2026-05-30 00:17:49] 2026-05-29 22:17:16,523 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-30 00:17:49] 2026-05-29 22:17:16,523 | INFO     | log transfer has been attempted: DONE
[2026-05-30 00:17:49] 2026-05-29 22:17:16,523 | INFO     | job 7157536337 has finished - writing final server update
[2026-05-30 00:17:49] 2026-05-29 22:17:16,523 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2704880/.job.ad'
[2026-05-30 00:17:49] 2026-05-29 22:17:16,524 | INFO     | total number of processed events: 400 (read)
[2026-05-30 00:17:49] 2026-05-29 22:17:16,540 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157536337/memory_monitor_summary.json (trf name=prmon)
[2026-05-30 00:17:49] 2026-05-29 22:17:16,540 | INFO     | extracted standard info from prmon json
[2026-05-30 00:17:49] 2026-05-29 22:17:16,540 | INFO     | extracted standard memory fields from prmon json
[2026-05-30 00:17:49] 2026-05-29 22:17:16,540 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-30 00:17:49] 2026-05-29 22:17:16,540 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-30 00:17:49] 2026-05-29 22:17:16,541 | INFO     | fitting pss+swap vs Time
[2026-05-30 00:17:49] 2026-05-29 22:17:16,541 | INFO     | sum of square deviations: 2474465.0
[2026-05-30 00:17:49] 2026-05-29 22:17:16,541 | INFO     | sum of deviations: -152154313.0
[2026-05-30 00:17:49] 2026-05-29 22:17:16,541 | INFO     | mean x (centered): 0.0
[2026-05-30 00:17:49] 2026-05-29 22:17:16,541 | INFO     | mean y: 2795815.6
[2026-05-30 00:17:49] 2026-05-29 22:17:16,541 | INFO     | intersect: 2795815.6
[2026-05-30 00:17:49] 2026-05-29 22:17:16,541 | INFO     | chi2: 0.002423626923299118
[2026-05-30 00:17:49] 2026-05-29 22:17:16,541 | INFO     | current memory leak: -61.49 B/s (using 20 data points, chi2=0.00)
[2026-05-30 00:17:49] 2026-05-29 22:17:16,541 | INFO     | could have reported an average CPU frequency of 3655 MHz (4 samples)
[2026-05-30 00:17:49] 2026-05-29 22:17:16,542 | INFO     | ..............................
[2026-05-30 00:17:49] 2026-05-29 22:17:16,542 | INFO     | . Timing measurements:
[2026-05-30 00:17:49] 2026-05-29 22:17:16,542 | INFO     | . get job = 0 s
[2026-05-30 00:17:49] 2026-05-29 22:17:16,542 | INFO     | . initial setup = 4 s
[2026-05-30 00:17:49] 2026-05-29 22:17:16,542 | INFO     | . payload setup = 5 s
[2026-05-30 00:17:49] 2026-05-29 22:17:16,542 | INFO     | . stage-in = 0 s
[2026-05-30 00:17:49] 2026-05-29 22:17:16,542 | INFO     | . payload execution = 1592 s
[2026-05-30 00:17:49] 2026-05-29 22:17:16,542 | INFO     | . stage-out = 0 s
[2026-05-30 00:17:49] 2026-05-29 22:17:16,542 | INFO     | . log creation = 0 s
[2026-05-30 00:17:49] 2026-05-29 22:17:16,542 | INFO     | ..............................
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | 
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | job summary report
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | --------------------------------------------------
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | PanDA job id: 7157536337
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | task id: 50533940
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | errors: (none)
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | pilot state: finished 
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | transexitcode: 0
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | exeerrorcode: 0
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | exeerrordiag: 
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | exitcode: 0
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | exitmsg: OK
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | cpuconsumptiontime: 16718 s
[2026-05-30 00:17:49] 2026-05-29 22:17:16,614 | INFO     | nevents: 400
[2026-05-30 00:17:49] 2026-05-29 22:17:16,615 | INFO     | neventsw: 0
[2026-05-30 00:17:49] 2026-05-29 22:17:16,615 | INFO     | pid: 703488
[2026-05-30 00:17:49] 2026-05-29 22:17:16,615 | INFO     | pgrp: 703488
[2026-05-30 00:17:49] 2026-05-29 22:17:16,615 | INFO     | corecount: 12
[2026-05-30 00:17:49] 2026-05-29 22:17:16,615 | INFO     | event service: False
[2026-05-30 00:17:49] 2026-05-29 22:17:16,615 | INFO     | sizes: {0: 2265705, 1: 2267590, 11: 2267590, 1602: 2292383, 1603: 2301405, 1604: 2301489, 1606: 2301811}
[2026-05-30 00:17:49] 2026-05-29 22:17:16,615 | INFO     | --------------------------------------------------
[2026-05-30 00:17:49] 2026-05-29 22:17:16,615 | INFO     | 
[2026-05-30 00:17:49] 2026-05-29 22:17:16,615 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot120/slots/0
[2026-05-30 00:17:49] 2026-05-29 22:17:16,632 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | job 7157536337 has completed (purged errors)
[2026-05-30 00:17:49] 2026-05-29 22:17:16,633 | INFO     | overall cleanup function is called
[2026-05-30 00:17:49] 2026-05-29 22:17:17,640 | INFO     | --- collectZombieJob: --- 10, [703488]
[2026-05-30 00:17:49] 2026-05-29 22:17:17,640 | INFO     | zombie collector waiting for pid 703488
[2026-05-30 00:17:49] 2026-05-29 22:17:17,640 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-30 00:17:49] 2026-05-29 22:17:17,640 | INFO     | collected zombie processes
[2026-05-30 00:17:49] 2026-05-29 22:17:17,640 | INFO     | will attempt to kill all subprocesses of pid=703488
[2026-05-30 00:17:49] 2026-05-29 22:17:17,819 | INFO     | process IDs to be killed: [703488] (in reverse order)
[2026-05-30 00:17:49] 2026-05-29 22:17:17,914 | WARNING  | found no corresponding commands to process id(s)
[2026-05-30 00:17:49] 2026-05-29 22:17:17,915 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-30 00:17:49] 2026-05-29 22:17:17,932 | INFO     | did not find any defunct processes belonging to 703488
[2026-05-30 00:17:49] 2026-05-29 22:17:17,943 | INFO     | did not find any defunct processes belonging to 703488
[2026-05-30 00:17:49] 2026-05-29 22:17:17,944 | INFO     | Ready for new job
[2026-05-30 00:17:49] 2026-05-29 22:17:17,944 | INFO     | ***************************************
[2026-05-30 00:17:49] 2026-05-29 22:17:17,946 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-30 00:17:49] 2026-05-29 22:17:17,946 | INFO     | ***************************************
[2026-05-30 00:17:49] 2026-05-29 22:17:17,946 | INFO     | 
[2026-05-30 00:17:49] 2026-05-29 22:17:17,950 | INFO     | architecture information:
[2026-05-30 00:17:49] 2026-05-29 22:17:17,950 | INFO     | executing command: cat /etc/os-release
[2026-05-30 00:17:49] 2026-05-29 22:17:17,962 | INFO     | cat /etc/os-release:
[2026-05-30 00:17:49] NAME="CentOS Linux"
[2026-05-30 00:17:49] VERSION="7 (Core)"
[2026-05-30 00:17:49] ID="centos"
[2026-05-30 00:17:49] ID_LIKE="rhel fedora"
[2026-05-30 00:17:49] VERSION_ID="7"
[2026-05-30 00:17:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-30 00:17:49] ANSI_COLOR="0;31"
[2026-05-30 00:17:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-30 00:17:49] HOME_URL="https://www.centos.org/"
[2026-05-30 00:17:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-30 00:17:49] 
[2026-05-30 00:17:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-30 00:17:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-30 00:17:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-30 00:17:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-30 00:17:49] 
[2026-05-30 00:17:49] 2026-05-29 22:17:17,963 | INFO     | ***************************************
[2026-05-30 00:17:49] 2026-05-29 22:17:18,465 | INFO     | executing command: df -mP /var/lib/boinc/var/slot120/slots/0
[2026-05-30 00:17:49] 2026-05-29 22:17:18,479 | INFO     | sufficient remaining disk space (329948069888 B)
[2026-05-30 00:17:49] 2026-05-29 22:17:18,479 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-30 00:17:49] 2026-05-29 22:17:18,479 | INFO     | current server update state: UPDATING_FINAL
[2026-05-30 00:17:49] 2026-05-29 22:17:18,479 | INFO     | update_server=False
[2026-05-30 00:17:49] 2026-05-29 22:17:18,479 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-30 00:17:49] 2026-05-29 22:17:18,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-30 00:17:49] 2026-05-29 22:17:18,480 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-30 00:17:49] 2026-05-29 22:17:18,876 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-30 00:17:49] 2026-05-29 22:17:18,876 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-30 00:17:49] 2026-05-29 22:17:18,876 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-30 00:17:49] 2026-05-29 22:17:18,876 | INFO     | will abort loop
[2026-05-30 00:17:49] 2026-05-29 22:17:19,463 | INFO     | all job control threads have been joined
[2026-05-30 00:17:49] 2026-05-29 22:17:19,485 | INFO     | [job] retrieve thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:19,485 | INFO     | [job] queue monitor thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:19,572 | INFO     | [data] copytool_in thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:19,575 | INFO     | all data control threads have been joined
[2026-05-30 00:17:49] 2026-05-29 22:17:19,669 | INFO     | all payload control threads have been joined
[2026-05-30 00:17:49] 2026-05-29 22:17:19,852 | INFO     | [payload] validate_post thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:19,872 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-30 00:17:49] 2026-05-29 22:17:19,881 | INFO     | [job] job monitor thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:20,468 | INFO     | [job] control thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:20,486 | INFO     | [data] copytool_out thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:20,580 | INFO     | [data] control thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:20,675 | INFO     | [payload] control thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:20,717 | INFO     | [job] validate thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:20,840 | INFO     | [payload] execute_payloads thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:20,841 | INFO     | [job] create_data_payload thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:20,855 | INFO     | [payload] validate_pre thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:20,974 | INFO     | [payload] failed_post thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:21,356 | INFO     | [monitor] cgroup control has ended
[2026-05-30 00:17:49] 2026-05-29 22:17:23,878 | INFO     | [data] queue_monitor thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:28,593 | INFO     | job.realtimelogging is not enabled
[2026-05-30 00:17:49] 2026-05-29 22:17:29,599 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-30 00:17:49] 2026-05-29 22:17:30,767 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23452774397760)>', '<ExcThread(monitor, started 23452465489664)>']
[2026-05-30 00:17:49] 2026-05-29 22:17:35,792 | INFO     | all workflow threads have been joined
[2026-05-30 00:17:49] 2026-05-29 22:17:35,792 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-30 00:17:49] 2026-05-29 22:17:35,793 | INFO     | traces error code: 0
[2026-05-30 00:17:49] 2026-05-29 22:17:35,793 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-30 00:17:49] 2026-05-29 22:17:49,519 | INFO     | PID=697639 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-30 00:17:49] 2026-05-29 22:17:49,519 | INFO     | .. there are 4 such processes running
[2026-05-30 00:17:49] 2026-05-29 22:17:49,521 | INFO     | found 0 job(s) in 20 queues
[2026-05-30 00:17:49] 2026-05-29 22:17:49,521 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-30 00:17:49] 2026-05-29 22:17:49,521 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-30 00:17:49] 2026-05-29 22:17:49,521 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-30 00:17:49] 2026-05-29 22:17:49,521 | CRITICAL | thread 'MainThread' is not alive
[2026-05-30 00:17:49] 2026-05-29 22:17:49,521 | INFO     | [monitor] control thread has ended
[2026-05-30 00:17:49] 2026-05-29 22:17:49,639 [wrapper] ==== pilot stdout END ====
[2026-05-30 00:17:49] 2026-05-29 22:17:49,641 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-30 00:17:49] 2026-05-29 22:17:49,643 [wrapper] pilotpid: 697639
[2026-05-30 00:17:49] 2026-05-29 22:17:49,644 [wrapper] Pilot exit status: 0
[2026-05-30 00:17:49] 2026-05-29 22:17:49,651 [wrapper] pandaids: 7157536337
[2026-05-30 00:17:49] 2026-05-29 22:17:49,720 [wrapper] cleanup supervisor_pilot  759042 697640
[2026-05-30 00:17:49] 2026-05-29 22:17:49,722 [wrapper] Test setup, not cleaning
[2026-05-30 00:17:49] 2026-05-29 22:17:49,724 [wrapper] apfmon messages muted
[2026-05-30 00:17:49] 2026-05-29 22:17:49,725 [wrapper] ==== wrapper stdout END ====
[2026-05-30 00:17:49] 2026-05-29 22:17:49,727 [wrapper] ==== wrapper stderr END ====
[2026-05-30 00:17:49]  *** Error codes and diagnostics ***
[2026-05-30 00:17:49]     "exeErrorCode": 0,
[2026-05-30 00:17:49]     "pilotErrorCode": 0,
[2026-05-30 00:17:49]  *** Listing of results directory ***
[2026-05-30 00:17:49] total 546512
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc    683926 May 29 17:58 pilot3.tar.gz
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc      5631 May 29 18:00 queuedata.json
[2026-05-30 00:17:49] -rwx------. 1 boinc boinc     36281 May 29 18:01 runpilot2-wrapper.sh
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc       100 May 29 23:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-30 00:17:49] -rwxr-xr-x. 1 boinc boinc      7986 May 29 23:50 run_atlas
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc       105 May 29 23:50 job.xml
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc      6628 May 29 23:50 init_data.xml
[2026-05-30 00:17:49] -rw-r--r--. 2 boinc boinc 308617270 May 29 23:50 EVNT.50532940._000070.pool.root.1
[2026-05-30 00:17:49] -rw-r--r--. 2 boinc boinc     15667 May 29 23:50 start_atlas.sh
[2026-05-30 00:17:49] drwxrwx--x. 2 boinc boinc      4096 May 29 23:50 shared
[2026-05-30 00:17:49] -rw-r--r--. 2 boinc boinc    697405 May 29 23:50 input.tar.gz
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc         0 May 29 23:50 boinc_lockfile
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc      2509 May 29 23:50 pandaJob.out
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc    995587 May 29 23:50 agis_schedconf.cvmfs.json
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc   1502789 May 29 23:50 agis_ddmendpoints.agis.ALL.json
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc       445 May 29 23:50 workernode_map.json
[2026-05-30 00:17:49] drwx------. 5 boinc boinc      4096 May 29 23:50 pilot3
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc       486 May 30 00:16 boinc_task_state.xml
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc 245840581 May 30 00:16 HITS.50533940._000477.pool.root.1
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc      1029 May 30 00:17 memory_monitor_summary.json
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc    319255 May 30 00:17 log.50533940._000477.job.log.tgz.1
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc      6380 May 30 00:17 heartbeat_new.json
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc      6271 May 30 00:17 heartbeat.json
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc      8192 May 30 00:17 boinc_mmap_file
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc        26 May 30 00:17 wrapper_checkpoint.txt
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc       891 May 30 00:17 pilotlog.txt
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc        95 May 30 00:17 pilot_heartbeat.json
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc    200899 May 30 00:17 log.50533940._000477.job.log.1
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc       357 May 30 00:17 output.list
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc       410 May 30 00:17 runtime_log
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc    542720 May 30 00:17 result.tar.gz
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc      8846 May 30 00:17 runtime_log.err
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc       659 May 30 00:17 b874f1c62b70.diag
[2026-05-30 00:17:49] -rw-r--r--. 1 boinc boinc     22475 May 30 00:17 stderr.txt
[2026-05-30 00:17:49] HITS file was successfully produced:
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc 245840581 May 30 00:16 shared/HITS.pool.root.1
[2026-05-30 00:17:49]  *** Contents of shared directory: ***
[2026-05-30 00:17:49] total 542708
[2026-05-30 00:17:49] -rw-r--r--. 2 boinc boinc 308617270 May 29 23:50 ATLAS.root_0
[2026-05-30 00:17:49] -rw-r--r--. 2 boinc boinc     15667 May 29 23:50 start_atlas.sh
[2026-05-30 00:17:49] -rw-r--r--. 2 boinc boinc    697405 May 29 23:50 input.tar.gz
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc 245840581 May 30 00:16 HITS.pool.root.1
[2026-05-30 00:17:49] -rw-------. 1 boinc boinc    542720 May 30 00:17 result.tar.gz
00:17:51 (692804): run_atlas exited; CPU time 16745.840535
00:17:51 (692804): called boinc_finish(0)

</stderr_txt>
]]>

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