Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:57:37 (54391): wrapper (7.7.26015): starting
20:57:37 (54391): wrapper: running run_atlas (--nthreads 12)
[2026-05-29 20:57:37] Arguments: --nthreads 12
[2026-05-29 20:57:37] Threads: 12
[2026-05-29 20:57:37] Checking for CVMFS
[2026-05-29 20:57:37] No cvmfs_config command found, will try listing directly
[2026-05-29 20:57:37] CVMFS is ok
[2026-05-29 20:57:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-29 20:57:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-29 20:57:37] Further information can be found at the LHC@home message board.
[2026-05-29 20:57:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-29 20:57:37] Checking for apptainer binary...
[2026-05-29 20:57:37] which: no apptainer in ((null))
[2026-05-29 20:57:37] apptainer is not installed, using version from CVMFS
[2026-05-29 20:57:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-29 20:57:37] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-05-29 20:57:37] apptainer works
[2026-05-29 20:57:37] Set ATHENA_PROC_NUMBER=12
[2026-05-29 20:57:37] Set ATHENA_CORE_NUMBER=12
[2026-05-29 20:57:37] Starting ATLAS job with PandaID=7157462771
[2026-05-29 20:57:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-29 21:21:52]  *** The last 200 lines of the pilot log: ***
[2026-05-29 21:21:52]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-29 21:21:52]  replicas=None
[2026-05-29 21:21:52]  scope=mc23_13p6TeV
[2026-05-29 21:21:52]  status=None
[2026-05-29 21:21:52]  status_code=0
[2026-05-29 21:21:52]  storage_token=
[2026-05-29 21:21:52]  surl=/var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157462771/log.50533925._008292.job.log.tgz.1
[2026-05-29 21:21:52]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/54/log.50533925._008292.job.log.tgz.1
[2026-05-29 21:21:52]  workdir=None
[2026-05-29 21:21:52] ]
[2026-05-29 21:21:52] 2026-05-29 19:20:35,440 | INFO     | transferring file log.50533925._008292.job.log.tgz.1 from /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157462771/log.50533925._008292.job.log.tgz.1 to /var/lib/
[2026-05-29 21:21:52] 2026-05-29 19:20:35,441 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157462771/log.50533925._008292.job.log.tgz.1 /var/lib/boinc/var/slot120/slots/0/
[2026-05-29 21:21:52] 2026-05-29 19:20:35,452 | INFO     | adding to output.list: log.50533925._008292.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/1f/54/log.50533925._008292.job.log.tg
[2026-05-29 21:21:52] 2026-05-29 19:20:35,453 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-29 21:21:52] 2026-05-29 19:20:35,453 | INFO     | summary of transferred files:
[2026-05-29 21:21:52] 2026-05-29 19:20:35,453 | INFO     |  -- lfn=log.50533925._008292.job.log.tgz.1, status_code=0, status=transferred
[2026-05-29 21:21:52] 2026-05-29 19:20:35,453 | INFO     | stage-out finished correctly
[2026-05-29 21:21:52] 2026-05-29 19:20:37,752 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-29 21:21:52] 2026-05-29 19:20:38,802 | INFO     | job 7157462771 has state=finished
[2026-05-29 21:21:52] 2026-05-29 19:20:38,802 | INFO     | preparing for final server update for job 7157462771 in state='finished'
[2026-05-29 21:21:52] 2026-05-29 19:20:38,802 | INFO     | reading metadata from: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157462771/jobReport.json
[2026-05-29 21:21:52] 2026-05-29 19:20:38,803 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot120/slots/0/workernode_map.json
[2026-05-29 21:21:52] 2026-05-29 19:20:38,803 | INFO     | this job has now completed (state=finished)
[2026-05-29 21:21:52] 2026-05-29 19:20:38,804 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-29 21:21:52] 2026-05-29 19:20:38,804 | INFO     | log transfer has been attempted: DONE
[2026-05-29 21:21:52] 2026-05-29 19:20:38,804 | INFO     | job 7157462771 has finished - writing final server update
[2026-05-29 21:21:52] 2026-05-29 19:20:38,804 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2704880/.job.ad'
[2026-05-29 21:21:52] 2026-05-29 19:20:38,804 | INFO     | total number of processed events: 400 (read)
[2026-05-29 21:21:52] 2026-05-29 19:20:38,819 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157462771/memory_monitor_summary.json (trf name=prmon)
[2026-05-29 21:21:52] 2026-05-29 19:20:38,819 | INFO     | extracted standard info from prmon json
[2026-05-29 21:21:52] 2026-05-29 19:20:38,819 | INFO     | extracted standard memory fields from prmon json
[2026-05-29 21:21:52] 2026-05-29 19:20:38,820 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-29 21:21:52] 2026-05-29 19:20:38,820 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-29 21:21:52] 2026-05-29 19:20:38,820 | INFO     | fitting pss+swap vs Time
[2026-05-29 21:21:52] 2026-05-29 19:20:38,820 | INFO     | sum of square deviations: 1265140.0
[2026-05-29 21:21:52] 2026-05-29 19:20:38,820 | INFO     | sum of deviations: 47489567.5
[2026-05-29 21:21:52] 2026-05-29 19:20:38,820 | INFO     | mean x (centered): 0.0
[2026-05-29 21:21:52] 2026-05-29 19:20:38,820 | INFO     | mean y: 2747287.1875
[2026-05-29 21:21:52] 2026-05-29 19:20:38,820 | INFO     | intersect: 2747287.1875
[2026-05-29 21:21:52] 2026-05-29 19:20:38,820 | INFO     | chi2: 0.0001135343081116814
[2026-05-29 21:21:52] 2026-05-29 19:20:38,820 | INFO     | current memory leak: 37.54 B/s (using 16 data points, chi2=0.00)
[2026-05-29 21:21:52] 2026-05-29 19:20:38,821 | INFO     | could have reported an average CPU frequency of 3793 MHz (4 samples)
[2026-05-29 21:21:52] 2026-05-29 19:20:38,821 | INFO     | ..............................
[2026-05-29 21:21:52] 2026-05-29 19:20:38,821 | INFO     | . Timing measurements:
[2026-05-29 21:21:52] 2026-05-29 19:20:38,821 | INFO     | . get job = 0 s
[2026-05-29 21:21:52] 2026-05-29 19:20:38,821 | INFO     | . initial setup = 3 s
[2026-05-29 21:21:52] 2026-05-29 19:20:38,821 | INFO     | . payload setup = 4 s
[2026-05-29 21:21:52] 2026-05-29 19:20:38,821 | INFO     | . stage-in = 0 s
[2026-05-29 21:21:52] 2026-05-29 19:20:38,821 | INFO     | . payload execution = 1349 s
[2026-05-29 21:21:52] 2026-05-29 19:20:38,821 | INFO     | . stage-out = 0 s
[2026-05-29 21:21:52] 2026-05-29 19:20:38,821 | INFO     | . log creation = 0 s
[2026-05-29 21:21:52] 2026-05-29 19:20:38,821 | INFO     | ..............................
[2026-05-29 21:21:52] 2026-05-29 19:20:38,890 | INFO     | 
[2026-05-29 21:21:52] 2026-05-29 19:20:38,890 | INFO     | job summary report
[2026-05-29 21:21:52] 2026-05-29 19:20:38,890 | INFO     | --------------------------------------------------
[2026-05-29 21:21:52] 2026-05-29 19:20:38,890 | INFO     | PanDA job id: 7157462771
[2026-05-29 21:21:52] 2026-05-29 19:20:38,890 | INFO     | task id: 50533925
[2026-05-29 21:21:52] 2026-05-29 19:20:38,890 | INFO     | errors: (none)
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | pilot state: finished 
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | transexitcode: 0
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | exeerrorcode: 0
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | exeerrordiag: 
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | exitcode: 0
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | exitmsg: OK
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | cpuconsumptiontime: 14449 s
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | nevents: 400
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | neventsw: 0
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | pid: 65215
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | pgrp: 65215
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | corecount: 12
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | event service: False
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | sizes: {0: 2267520, 10: 2267520, 1358: 2301190, 1361: 2301190, 1362: 2301384}
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | --------------------------------------------------
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | 
[2026-05-29 21:21:52] 2026-05-29 19:20:38,891 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot120/slots/0
[2026-05-29 21:21:52] 2026-05-29 19:20:38,909 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,910 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-29 21:21:52] 2026-05-29 19:20:38,911 | INFO     | job 7157462771 has completed (purged errors)
[2026-05-29 21:21:52] 2026-05-29 19:20:38,911 | INFO     | overall cleanup function is called
[2026-05-29 21:21:52] 2026-05-29 19:20:39,080 | WARNING  | process 65215 can no longer be monitored (due to stat problems) - aborting
[2026-05-29 21:21:52] 2026-05-29 19:20:39,240 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-29 21:21:52] 2026-05-29 19:20:39,240 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-29 21:21:52] 2026-05-29 19:20:39,240 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-05-29 21:21:52] 2026-05-29 19:20:39,240 | WARNING  | maxPSS not found in memory monitor output
[2026-05-29 21:21:52] 2026-05-29 19:20:39,240 | INFO     | skipping file size check of payload stdout file (/var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157462771/payload.stdout) since it has not been created yet
[2026-05-29 21:21:52] 2026-05-29 19:20:39,240 | INFO     | executing command: df -mP /var/lib/boinc/var/slot120/slots/0
[2026-05-29 21:21:52] 2026-05-29 19:20:39,248 | INFO     | sufficient remaining disk space (329845309440 B)
[2026-05-29 21:21:52] 2026-05-29 19:20:39,248 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-05-29 21:21:52] 2026-05-29 19:20:39,248 | INFO     | output file size check: skipping output file /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157462771/HITS.50533925._008292.pool.root.1 since it does not exist
[2026-05-29 21:21:52] 2026-05-29 19:20:39,430 | INFO     | number of running child processes to parent process 65215: 1
[2026-05-29 21:21:52] 2026-05-29 19:20:39,430 | INFO     | maximum number of monitored processes: 6
[2026-05-29 21:21:52] 2026-05-29 19:20:39,430 | INFO     | aborting job monitoring since job object (job id=7157462771) has expired
[2026-05-29 21:21:52] 2026-05-29 19:20:39,918 | INFO     | --- collectZombieJob: --- 10, [65215]
[2026-05-29 21:21:52] 2026-05-29 19:20:39,918 | INFO     | zombie collector waiting for pid 65215
[2026-05-29 21:21:52] 2026-05-29 19:20:39,918 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-29 21:21:52] 2026-05-29 19:20:39,918 | INFO     | collected zombie processes
[2026-05-29 21:21:52] 2026-05-29 19:20:39,919 | INFO     | will attempt to kill all subprocesses of pid=65215
[2026-05-29 21:21:52] 2026-05-29 19:20:40,097 | INFO     | process IDs to be killed: [65215] (in reverse order)
[2026-05-29 21:21:52] 2026-05-29 19:20:40,200 | WARNING  | found no corresponding commands to process id(s)
[2026-05-29 21:21:52] 2026-05-29 19:20:40,200 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-29 21:21:52] 2026-05-29 19:20:40,218 | INFO     | did not find any defunct processes belonging to 65215
[2026-05-29 21:21:52] 2026-05-29 19:20:40,235 | INFO     | did not find any defunct processes belonging to 65215
[2026-05-29 21:21:52] 2026-05-29 19:20:40,235 | INFO     | Ready for new job
[2026-05-29 21:21:52] 2026-05-29 19:20:40,236 | INFO     | ***************************************
[2026-05-29 21:21:52] 2026-05-29 19:20:40,236 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-29 21:21:52] 2026-05-29 19:20:40,236 | INFO     | ***************************************
[2026-05-29 21:21:52] 2026-05-29 19:20:40,236 | INFO     | 
[2026-05-29 21:21:52] 2026-05-29 19:20:40,240 | INFO     | architecture information:
[2026-05-29 21:21:52] 2026-05-29 19:20:40,240 | INFO     | executing command: cat /etc/os-release
[2026-05-29 21:21:52] 2026-05-29 19:20:40,250 | INFO     | cat /etc/os-release:
[2026-05-29 21:21:52] NAME="CentOS Linux"
[2026-05-29 21:21:52] VERSION="7 (Core)"
[2026-05-29 21:21:52] ID="centos"
[2026-05-29 21:21:52] ID_LIKE="rhel fedora"
[2026-05-29 21:21:52] VERSION_ID="7"
[2026-05-29 21:21:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-29 21:21:52] ANSI_COLOR="0;31"
[2026-05-29 21:21:52] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-29 21:21:52] HOME_URL="https://www.centos.org/"
[2026-05-29 21:21:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-29 21:21:52] 
[2026-05-29 21:21:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-29 21:21:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-29 21:21:52] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-29 21:21:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-29 21:21:52] 
[2026-05-29 21:21:52] 2026-05-29 19:20:40,250 | INFO     | ***************************************
[2026-05-29 21:21:52] 2026-05-29 19:20:40,753 | INFO     | executing command: df -mP /var/lib/boinc/var/slot120/slots/0
[2026-05-29 21:21:52] 2026-05-29 19:20:40,766 | INFO     | sufficient remaining disk space (329842163712 B)
[2026-05-29 21:21:52] 2026-05-29 19:20:40,766 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-29 21:21:52] 2026-05-29 19:20:40,766 | INFO     | current server update state: UPDATING_FINAL
[2026-05-29 21:21:52] 2026-05-29 19:20:40,766 | INFO     | update_server=False
[2026-05-29 21:21:52] 2026-05-29 19:20:40,766 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-29 21:21:52] 2026-05-29 19:20:40,767 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-29 21:21:52] 2026-05-29 19:20:40,767 | INFO     | aborting loop
[2026-05-29 21:21:52] 2026-05-29 19:20:40,767 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-29 21:21:52] 2026-05-29 19:20:40,984 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-29 21:21:52] 2026-05-29 19:20:41,409 | INFO     | all data control threads have been joined
[2026-05-29 21:21:52] 2026-05-29 19:20:41,440 | INFO     | all payload control threads have been joined
[2026-05-29 21:21:52] 2026-05-29 19:20:41,772 | INFO     | [job] retrieve thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:41,772 | INFO     | [job] job monitor thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:41,773 | INFO     | [job] queue monitor thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:42,114 | INFO     | [payload] execute_payloads thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:42,414 | INFO     | [data] control thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:42,446 | INFO     | [payload] control thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:42,459 | INFO     | all job control threads have been joined
[2026-05-29 21:21:52] 2026-05-29 19:20:42,558 | INFO     | [payload] validate_post thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:42,765 | INFO     | [payload] failed_post thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:42,840 | INFO     | [job] validate thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:42,918 | INFO     | [job] create_data_payload thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:42,940 | INFO     | [payload] validate_pre thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:42,990 | INFO     | [data] copytool_out thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:43,067 | INFO     | [data] copytool_in thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:43,464 | INFO     | [job] control thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:43,797 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-29 21:21:52] 2026-05-29 19:20:47,803 | INFO     | [data] queue_monitor thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:48,345 | INFO     | [monitor] cgroup control has ended
[2026-05-29 21:21:52] 2026-05-29 19:20:51,093 | INFO     | job.realtimelogging is not enabled
[2026-05-29 21:21:52] 2026-05-29 19:20:52,099 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-29 21:21:52] 2026-05-29 19:20:52,282 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22726350575424)>', '<ExcThread(monitor, started 22726116132608)>']
[2026-05-29 21:21:52] 2026-05-29 19:20:57,296 | INFO     | all workflow threads have been joined
[2026-05-29 21:21:52] 2026-05-29 19:20:57,296 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-29 21:21:52] 2026-05-29 19:20:57,297 | INFO     | traces error code: 0
[2026-05-29 21:21:52] 2026-05-29 19:20:57,297 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-29 21:21:52] 2026-05-29 19:21:10,874 | INFO     | PID=59350 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-29 21:21:52] 2026-05-29 19:21:10,874 | INFO     | .. there are 5 such processes running
[2026-05-29 21:21:52] 2026-05-29 19:21:10,876 | INFO     | found 0 job(s) in 20 queues
[2026-05-29 21:21:52] 2026-05-29 19:21:10,876 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-29 21:21:52] 2026-05-29 19:21:10,876 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-29 21:21:52] 2026-05-29 19:21:10,876 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-29 21:21:52] 2026-05-29 19:21:10,876 | INFO     | [monitor] control thread has ended
[2026-05-29 21:21:52] 2026-05-29 19:21:11,018 [wrapper] ==== pilot stdout END ====
[2026-05-29 21:21:52] 2026-05-29 19:21:11,019 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-29 21:21:52] 2026-05-29 19:21:11,020 [wrapper] pilotpid: 59350
[2026-05-29 21:21:52] 2026-05-29 19:21:11,021 [wrapper] Pilot exit status: 0
[2026-05-29 21:21:52] 2026-05-29 19:21:11,025 [wrapper] pandaids: 7157462771
[2026-05-29 21:21:52] 2026-05-29 19:21:11,097 [wrapper] cleanup supervisor_pilot  103250 59351
[2026-05-29 21:21:52] 2026-05-29 19:21:11,099 [wrapper] Test setup, not cleaning
[2026-05-29 21:21:52] 2026-05-29 19:21:11,101 [wrapper] apfmon messages muted
[2026-05-29 21:21:52] 2026-05-29 19:21:11,102 [wrapper] ==== wrapper stdout END ====
[2026-05-29 21:21:52] 2026-05-29 19:21:11,102 [wrapper] ==== wrapper stderr END ====
[2026-05-29 21:21:52]  *** Error codes and diagnostics ***
[2026-05-29 21:21:52]     "exeErrorCode": 0,
[2026-05-29 21:21:52]     "pilotErrorCode": 0,
[2026-05-29 21:21:52]  *** Listing of results directory ***
[2026-05-29 21:21:52] total 504980
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc    683926 May 29 12:50 pilot3.tar.gz
[2026-05-29 21:21:52] -rwx------. 1 boinc boinc     36281 May 29 12:53 runpilot2-wrapper.sh
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc      5631 May 29 12:54 queuedata.json
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc       100 May 29 19:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-29 21:21:52] -rwxr-xr-x. 1 boinc boinc      7986 May 29 19:42 run_atlas
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc       105 May 29 19:42 job.xml
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc      6628 May 29 20:57 init_data.xml
[2026-05-29 21:21:52] -rw-r--r--. 2 boinc boinc 294943214 May 29 20:57 EVNT.50469837._000332.pool.root.1
[2026-05-29 21:21:52] -rw-r--r--. 2 boinc boinc     15667 May 29 20:57 start_atlas.sh
[2026-05-29 21:21:52] drwxrwx--x. 2 boinc boinc      4096 May 29 20:57 shared
[2026-05-29 21:21:52] -rw-r--r--. 2 boinc boinc    697420 May 29 20:57 input.tar.gz
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc         0 May 29 20:57 boinc_lockfile
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc      2513 May 29 20:57 pandaJob.out
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc    995571 May 29 20:57 agis_schedconf.cvmfs.json
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc   1502789 May 29 20:57 agis_ddmendpoints.agis.ALL.json
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc       444 May 29 20:57 workernode_map.json
[2026-05-29 21:21:52] drwx------. 5 boinc boinc      4096 May 29 20:57 pilot3
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc 217005918 May 29 21:20 HITS.50533925._008292.pool.root.1
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc       485 May 29 21:20 boinc_task_state.xml
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc      1029 May 29 21:20 memory_monitor_summary.json
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc    337494 May 29 21:20 log.50533925._008292.job.log.tgz.1
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc      6375 May 29 21:20 heartbeat_new.json
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc      6266 May 29 21:20 heartbeat.json
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc        95 May 29 21:21 pilot_heartbeat.json
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc       820 May 29 21:21 pilotlog.txt
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc    177931 May 29 21:21 log.50533925._008292.job.log.1
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc       357 May 29 21:21 output.list
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc       410 May 29 21:21 runtime_log
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc    532480 May 29 21:21 result.tar.gz
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc      8846 May 29 21:21 runtime_log.err
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc       659 May 29 21:21 702c6b922477.diag
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc        26 May 29 21:21 wrapper_checkpoint.txt
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc      8192 May 29 21:21 boinc_mmap_file
[2026-05-29 21:21:52] -rw-r--r--. 1 boinc boinc     21854 May 29 21:21 stderr.txt
[2026-05-29 21:21:52] HITS file was successfully produced:
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc 217005918 May 29 21:20 shared/HITS.pool.root.1
[2026-05-29 21:21:52]  *** Contents of shared directory: ***
[2026-05-29 21:21:52] total 501180
[2026-05-29 21:21:52] -rw-r--r--. 2 boinc boinc 294943214 May 29 20:57 ATLAS.root_0
[2026-05-29 21:21:52] -rw-r--r--. 2 boinc boinc     15667 May 29 20:57 start_atlas.sh
[2026-05-29 21:21:52] -rw-r--r--. 2 boinc boinc    697420 May 29 20:57 input.tar.gz
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc 217005918 May 29 21:20 HITS.pool.root.1
[2026-05-29 21:21:52] -rw-------. 1 boinc boinc    532480 May 29 21:21 result.tar.gz
21:21:53 (54391): run_atlas exited; CPU time 14473.782597
21:21:53 (54391): called boinc_finish(0)

</stderr_txt>
]]>

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