Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:08:42 (3633972): wrapper (7.7.26015): starting
18:08:42 (3633972): wrapper: running run_atlas (--nthreads 12)
[2026-05-29 18:08:42] Arguments: --nthreads 12
[2026-05-29 18:08:42] Threads: 12
[2026-05-29 18:08:42] Checking for CVMFS
[2026-05-29 18:08:42] No cvmfs_config command found, will try listing directly
[2026-05-29 18:08:42] CVMFS is ok
[2026-05-29 18:08:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-29 18:08:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-29 18:08:42] Further information can be found at the LHC@home message board.
[2026-05-29 18:08:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-29 18:08:42] Checking for apptainer binary...
[2026-05-29 18:08:42] which: no apptainer in ((null))
[2026-05-29 18:08:42] apptainer is not installed, using version from CVMFS
[2026-05-29 18:08:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-29 18:08:42] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot120/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut22.grid.cesnet.cz
[2026-05-29 18:08:42] apptainer works
[2026-05-29 18:08:42] Set ATHENA_PROC_NUMBER=12
[2026-05-29 18:08:42] Set ATHENA_CORE_NUMBER=12
[2026-05-29 18:08:42] Starting ATLAS job with PandaID=7157464383
[2026-05-29 18:08:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot120/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-29 18:35:06]  *** The last 200 lines of the pilot log: ***
[2026-05-29 18:35:06]  guid=358b58ed-60cf-4615-9d5a-2d6a9cf90e19
[2026-05-29 18:35:06]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-29 18:35:06]  is_altstaged=None
[2026-05-29 18:35:06]  is_tar=False
[2026-05-29 18:35:06]  lfn=log.50533925._009345.job.log.tgz.1
[2026-05-29 18:35:06]  mtime=0
[2026-05-29 18:35:06]  protocol_id=None
[2026-05-29 18:35:06]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-29 18:35:06]  replicas=None
[2026-05-29 18:35:06]  scope=mc23_13p6TeV
[2026-05-29 18:35:06]  status=None
[2026-05-29 18:35:06]  status_code=0
[2026-05-29 18:35:06]  storage_token=
[2026-05-29 18:35:06]  surl=/var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157464383/log.50533925._009345.job.log.tgz.1
[2026-05-29 18:35:06]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/86/log.50533925._009345.job.log.tgz.1
[2026-05-29 18:35:06]  workdir=None
[2026-05-29 18:35:06] ]
[2026-05-29 18:35:06] 2026-05-29 16:34:12,455 | INFO     | transferring file log.50533925._009345.job.log.tgz.1 from /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157464383/log.50533925._009345.job.log.tgz.1 to /var/lib/
[2026-05-29 18:35:06] 2026-05-29 16:34:12,455 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157464383/log.50533925._009345.job.log.tgz.1 /var/lib/boinc/var/slot120/slots/0/
[2026-05-29 18:35:06] 2026-05-29 16:34:12,470 | INFO     | adding to output.list: log.50533925._009345.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/2e/86/log.50533925._009345.job.log.tg
[2026-05-29 18:35:06] 2026-05-29 16:34:12,471 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-29 18:35:06] 2026-05-29 16:34:12,471 | INFO     | summary of transferred files:
[2026-05-29 18:35:06] 2026-05-29 16:34:12,471 | INFO     |  -- lfn=log.50533925._009345.job.log.tgz.1, status_code=0, status=transferred
[2026-05-29 18:35:06] 2026-05-29 16:34:12,471 | INFO     | stage-out finished correctly
[2026-05-29 18:35:06] 2026-05-29 16:34:12,692 | INFO     | number of running child processes to parent process 3654608: 1
[2026-05-29 18:35:06] 2026-05-29 16:34:12,692 | INFO     | maximum number of monitored processes: 6
[2026-05-29 18:35:06] 2026-05-29 16:34:15,195 | INFO     | monitor loop #118: job 0:7157464383 is in state 'finished'
[2026-05-29 18:35:06] 2026-05-29 16:34:15,195 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-29 18:35:06] 2026-05-29 16:34:15,229 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-29 18:35:06] 2026-05-29 16:34:15,326 | INFO     | job 7157464383 has state=finished
[2026-05-29 18:35:06] 2026-05-29 16:34:15,326 | INFO     | preparing for final server update for job 7157464383 in state='finished'
[2026-05-29 18:35:06] 2026-05-29 16:34:15,326 | INFO     | reading metadata from: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157464383/jobReport.json
[2026-05-29 18:35:06] 2026-05-29 16:34:15,328 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot120/slots/0/workernode_map.json
[2026-05-29 18:35:06] 2026-05-29 16:34:15,328 | INFO     | this job has now completed (state=finished)
[2026-05-29 18:35:06] 2026-05-29 16:34:15,328 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-29 18:35:06] 2026-05-29 16:34:15,328 | INFO     | log transfer has been attempted: DONE
[2026-05-29 18:35:06] 2026-05-29 16:34:15,328 | INFO     | job 7157464383 has finished - writing final server update
[2026-05-29 18:35:06] 2026-05-29 16:34:15,329 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2704880/.job.ad'
[2026-05-29 18:35:06] 2026-05-29 16:34:15,329 | INFO     | total number of processed events: 400 (read)
[2026-05-29 18:35:06] 2026-05-29 16:34:15,346 | INFO     | using path: /var/lib/boinc/var/slot120/slots/0/PanDA_Pilot-7157464383/memory_monitor_summary.json (trf name=prmon)
[2026-05-29 18:35:06] 2026-05-29 16:34:15,346 | INFO     | extracted standard info from prmon json
[2026-05-29 18:35:06] 2026-05-29 16:34:15,346 | INFO     | extracted standard memory fields from prmon json
[2026-05-29 18:35:06] 2026-05-29 16:34:15,347 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-29 18:35:06] 2026-05-29 16:34:15,347 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-29 18:35:06] 2026-05-29 16:34:15,347 | INFO     | fitting pss+swap vs Time
[2026-05-29 18:35:06] 2026-05-29 16:34:15,347 | INFO     | sum of square deviations: 1802824.5
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | sum of deviations: 51312925.5
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | mean x (centered): 0.0
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | mean y: 2731341.8333333335
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | intersect: 2731341.8333333335
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | chi2: 5.5826226621683744e-05
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | current memory leak: 28.46 B/s (using 18 data points, chi2=0.00)
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | could have reported an average CPU frequency of 3662 MHz (4 samples)
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | ..............................
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | . Timing measurements:
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | . get job = 0 s
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | . initial setup = 3 s
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | . payload setup = 5 s
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | . stage-in = 0 s
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | . payload execution = 1500 s
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | . stage-out = 0 s
[2026-05-29 18:35:06] 2026-05-29 16:34:15,348 | INFO     | . log creation = 0 s
[2026-05-29 18:35:06] 2026-05-29 16:34:15,349 | INFO     | ..............................
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | 
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | job summary report
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | --------------------------------------------------
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | PanDA job id: 7157464383
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | task id: 50533925
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | errors: (none)
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | pilot state: finished 
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | transexitcode: 0
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | exeerrorcode: 0
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | exeerrordiag: 
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | exitcode: 0
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | exitmsg: OK
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | cpuconsumptiontime: 16125 s
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | nevents: 400
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | neventsw: 0
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | pid: 3654608
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | pgrp: 3654608
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | corecount: 12
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | event service: False
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | sizes: {0: 2267519, 11: 2267519, 1509: 2292289, 1510: 2301311, 1513: 2301561}
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | --------------------------------------------------
[2026-05-29 18:35:06] 2026-05-29 16:34:15,396 | INFO     | 
[2026-05-29 18:35:06] 2026-05-29 16:34:15,397 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot120/slots/0
[2026-05-29 18:35:06] 2026-05-29 16:34:15,413 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,413 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,413 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,413 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,413 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,413 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,413 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,413 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,413 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,413 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,414 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,414 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,414 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,414 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,414 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,414 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,414 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,414 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-29 18:35:06] 2026-05-29 16:34:15,414 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,414 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-29 18:35:06] 2026-05-29 16:34:15,414 | INFO     | job 7157464383 has completed (purged errors)
[2026-05-29 18:35:06] 2026-05-29 16:34:15,414 | INFO     | overall cleanup function is called
[2026-05-29 18:35:06] 2026-05-29 16:34:16,421 | INFO     | --- collectZombieJob: --- 10, [3654608]
[2026-05-29 18:35:06] 2026-05-29 16:34:16,422 | INFO     | zombie collector waiting for pid 3654608
[2026-05-29 18:35:06] 2026-05-29 16:34:16,422 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-29 18:35:06] 2026-05-29 16:34:16,422 | INFO     | collected zombie processes
[2026-05-29 18:35:06] 2026-05-29 16:34:16,422 | INFO     | will attempt to kill all subprocesses of pid=3654608
[2026-05-29 18:35:06] 2026-05-29 16:34:16,619 | INFO     | process IDs to be killed: [3654608] (in reverse order)
[2026-05-29 18:35:06] 2026-05-29 16:34:16,724 | WARNING  | found no corresponding commands to process id(s)
[2026-05-29 18:35:06] 2026-05-29 16:34:16,725 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-29 18:35:06] 2026-05-29 16:34:16,748 | INFO     | did not find any defunct processes belonging to 3654608
[2026-05-29 18:35:06] 2026-05-29 16:34:16,769 | INFO     | did not find any defunct processes belonging to 3654608
[2026-05-29 18:35:06] 2026-05-29 16:34:16,770 | INFO     | Ready for new job
[2026-05-29 18:35:06] 2026-05-29 16:34:16,771 | INFO     | ***************************************
[2026-05-29 18:35:06] 2026-05-29 16:34:16,771 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-29 18:35:06] 2026-05-29 16:34:16,771 | INFO     | ***************************************
[2026-05-29 18:35:06] 2026-05-29 16:34:16,771 | INFO     | 
[2026-05-29 18:35:06] 2026-05-29 16:34:16,776 | INFO     | architecture information:
[2026-05-29 18:35:06] 2026-05-29 16:34:16,777 | INFO     | executing command: cat /etc/os-release
[2026-05-29 18:35:06] 2026-05-29 16:34:16,790 | INFO     | cat /etc/os-release:
[2026-05-29 18:35:06] NAME="CentOS Linux"
[2026-05-29 18:35:06] VERSION="7 (Core)"
[2026-05-29 18:35:06] ID="centos"
[2026-05-29 18:35:06] ID_LIKE="rhel fedora"
[2026-05-29 18:35:06] VERSION_ID="7"
[2026-05-29 18:35:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-29 18:35:06] ANSI_COLOR="0;31"
[2026-05-29 18:35:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-29 18:35:06] HOME_URL="https://www.centos.org/"
[2026-05-29 18:35:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-29 18:35:06] 
[2026-05-29 18:35:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-29 18:35:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-29 18:35:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-29 18:35:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-29 18:35:06] 
[2026-05-29 18:35:06] 2026-05-29 16:34:16,790 | INFO     | ***************************************
[2026-05-29 18:35:06] 2026-05-29 16:34:17,293 | INFO     | executing command: df -mP /var/lib/boinc/var/slot120/slots/0
[2026-05-29 18:35:06] 2026-05-29 16:34:17,308 | INFO     | sufficient remaining disk space (329922904064 B)
[2026-05-29 18:35:06] 2026-05-29 16:34:17,308 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-29 18:35:06] 2026-05-29 16:34:17,308 | INFO     | current server update state: UPDATING_FINAL
[2026-05-29 18:35:06] 2026-05-29 16:34:17,308 | INFO     | update_server=False
[2026-05-29 18:35:06] 2026-05-29 16:34:17,308 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-29 18:35:06] 2026-05-29 16:34:17,309 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-29 18:35:06] 2026-05-29 16:34:17,309 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-29 18:35:06] 2026-05-29 16:34:17,698 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-29 18:35:06] 2026-05-29 16:34:17,699 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-29 18:35:06] 2026-05-29 16:34:17,699 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-29 18:35:06] 2026-05-29 16:34:17,699 | INFO     | will abort loop
[2026-05-29 18:35:06] 2026-05-29 16:34:17,740 | INFO     | all payload control threads have been joined
[2026-05-29 18:35:06] 2026-05-29 16:34:18,025 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-29 18:35:06] 2026-05-29 16:34:18,269 | INFO     | all data control threads have been joined
[2026-05-29 18:35:06] 2026-05-29 16:34:18,311 | INFO     | [job] queue monitor thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:18,313 | INFO     | [job] retrieve thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:18,542 | INFO     | all job control threads have been joined
[2026-05-29 18:35:06] 2026-05-29 16:34:18,695 | INFO     | [payload] execute_payloads thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:18,702 | INFO     | [job] job monitor thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:18,745 | INFO     | [payload] control thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:19,010 | INFO     | [job] validate thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:19,045 | INFO     | [job] create_data_payload thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:19,136 | INFO     | [payload] validate_post thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:19,145 | INFO     | [payload] validate_pre thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:19,274 | INFO     | [data] control thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:19,283 | INFO     | [data] copytool_in thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:19,514 | INFO     | [payload] failed_post thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:19,548 | INFO     | [job] control thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:20,030 | INFO     | [data] copytool_out thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:21,315 | INFO     | [data] queue_monitor thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:27,810 | INFO     | job.realtimelogging is not enabled
[2026-05-29 18:35:06] 2026-05-29 16:34:28,815 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-29 18:35:06] 2026-05-29 16:34:47,737 | INFO     | PID=3643180 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-29 18:35:06] 2026-05-29 16:34:47,739 | INFO     | .. there are 6 such processes running
[2026-05-29 18:35:06] 2026-05-29 16:34:47,740 | INFO     | found 0 job(s) in 20 queues
[2026-05-29 18:35:06] 2026-05-29 16:34:47,741 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-29 18:35:06] 2026-05-29 16:34:47,741 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-29 18:35:06] 2026-05-29 16:34:52,694 | INFO     | [monitor] cgroup control has ended
[2026-05-29 18:35:06] 2026-05-29 16:34:53,798 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23005856945984)>', '<ExcThread(monitor, started 23005609846528)>']
[2026-05-29 18:35:06] 2026-05-29 16:34:54,776 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-29 18:35:06] 2026-05-29 16:34:54,776 | INFO     | [monitor] control thread has ended
[2026-05-29 18:35:06] 2026-05-29 16:34:58,805 | INFO     | all workflow threads have been joined
[2026-05-29 18:35:06] 2026-05-29 16:34:58,805 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-29 18:35:06] 2026-05-29 16:34:58,805 | INFO     | traces error code: 0
[2026-05-29 18:35:06] 2026-05-29 16:34:58,805 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-29 18:35:06] 2026-05-29 16:34:58,958 [wrapper] ==== pilot stdout END ====
[2026-05-29 18:35:06] 2026-05-29 16:34:58,960 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-29 18:35:06] 2026-05-29 16:34:58,962 [wrapper] pilotpid: 3643180
[2026-05-29 18:35:06] 2026-05-29 16:34:58,964 [wrapper] Pilot exit status: 0
[2026-05-29 18:35:06] 2026-05-29 16:34:58,971 [wrapper] pandaids: 7157464383
[2026-05-29 18:35:06] 2026-05-29 16:34:59,071 [wrapper] cleanup supervisor_pilot 3731390 3643181
[2026-05-29 18:35:06] 2026-05-29 16:34:59,073 [wrapper] Test setup, not cleaning
[2026-05-29 18:35:06] 2026-05-29 16:34:59,075 [wrapper] apfmon messages muted
[2026-05-29 18:35:06] 2026-05-29 16:34:59,077 [wrapper] ==== wrapper stdout END ====
[2026-05-29 18:35:06] 2026-05-29 16:34:59,079 [wrapper] ==== wrapper stderr END ====
[2026-05-29 18:35:06]  *** Error codes and diagnostics ***
[2026-05-29 18:35:06]     "exeErrorCode": 0,
[2026-05-29 18:35:06]     "pilotErrorCode": 0,
[2026-05-29 18:35:06]  *** Listing of results directory ***
[2026-05-29 18:35:06] total 507936
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc      5631 May 29 12:50 queuedata.json
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc    683926 May 29 12:50 pilot3.tar.gz
[2026-05-29 18:35:06] -rwx------. 1 boinc boinc     36281 May 29 12:50 runpilot2-wrapper.sh
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc       100 May 29 17:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-29 18:35:06] -rwxr-xr-x. 1 boinc boinc      7986 May 29 17:13 run_atlas
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc       105 May 29 17:13 job.xml
[2026-05-29 18:35:06] -rw-r--r--. 2 boinc boinc 296378588 May 29 18:08 EVNT.50469837._000374.pool.root.1
[2026-05-29 18:35:06] -rw-r--r--. 2 boinc boinc     15667 May 29 18:08 start_atlas.sh
[2026-05-29 18:35:06] drwxrwx--x. 2 boinc boinc      4096 May 29 18:08 shared
[2026-05-29 18:35:06] -rw-r--r--. 2 boinc boinc    697418 May 29 18:08 input.tar.gz
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc      6628 May 29 18:08 init_data.xml
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc         0 May 29 18:08 boinc_lockfile
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc      2512 May 29 18:08 pandaJob.out
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc    995587 May 29 18:08 agis_schedconf.cvmfs.json
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc   1502789 May 29 18:08 agis_ddmendpoints.agis.ALL.json
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc       443 May 29 18:08 workernode_map.json
[2026-05-29 18:35:06] drwx------. 5 boinc boinc      4096 May 29 18:08 pilot3
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc 218553805 May 29 18:33 HITS.50533925._009345.pool.root.1
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc       486 May 29 18:33 boinc_task_state.xml
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc      1026 May 29 18:34 memory_monitor_summary.json
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc    341501 May 29 18:34 log.50533925._009345.job.log.tgz.1
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc      6374 May 29 18:34 heartbeat_new.json
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc      6265 May 29 18:34 heartbeat.json
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc        95 May 29 18:34 pilot_heartbeat.json
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc      5091 May 29 18:34 pilotlog.txt
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc    190268 May 29 18:34 log.50533925._009345.job.log.1
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc       357 May 29 18:34 output.list
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc       410 May 29 18:34 runtime_log
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc    552960 May 29 18:34 result.tar.gz
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc      8846 May 29 18:34 runtime_log.err
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc       659 May 29 18:34 6f8d94346561.diag
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc        26 May 29 18:35 wrapper_checkpoint.txt
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc      8192 May 29 18:35 boinc_mmap_file
[2026-05-29 18:35:06] -rw-r--r--. 1 boinc boinc     21125 May 29 18:35 stderr.txt
[2026-05-29 18:35:06] HITS file was successfully produced:
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc 218553805 May 29 18:33 shared/HITS.pool.root.1
[2026-05-29 18:35:06]  *** Contents of shared directory: ***
[2026-05-29 18:35:06] total 504116
[2026-05-29 18:35:06] -rw-r--r--. 2 boinc boinc 296378588 May 29 18:08 ATLAS.root_0
[2026-05-29 18:35:06] -rw-r--r--. 2 boinc boinc     15667 May 29 18:08 start_atlas.sh
[2026-05-29 18:35:06] -rw-r--r--. 2 boinc boinc    697418 May 29 18:08 input.tar.gz
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc 218553805 May 29 18:33 HITS.pool.root.1
[2026-05-29 18:35:06] -rw-------. 1 boinc boinc    552960 May 29 18:34 result.tar.gz
18:35:07 (3633972): run_atlas exited; CPU time 16161.776378
18:35:07 (3633972): called boinc_finish(0)

</stderr_txt>
]]>

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