Stderr output

<core_client_version>8.2.13</core_client_version>
<![CDATA[
<stderr_txt>
2026-05-29 18:24:13 (7329): vboxwrapper version 26210
2026-05-29 18:24:13 (7329): BOINC client version: 8.2.13
2026-05-29 18:24:13 (7329): Detected: VirtualBox VboxManage Interface (Version: 7.2.8)
2026-05-29 18:24:13 (7329): Successfully copied 'init_data.xml' to the shared directory.
2026-05-29 18:24:14 (7329): Create VM. (boinc_e78325b7db5da903, slot#3)
2026-05-29 18:24:14 (7329): Setting Memory Size for VM. (4800MB)
2026-05-29 18:24:14 (7329): Setting CPU Count for VM. (8)
2026-05-29 18:24:14 (7329): Setting Chipset Options for VM.
2026-05-29 18:24:14 (7329): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-05-29 18:24:14 (7329): Setting Boot Options for VM.
2026-05-29 18:24:14 (7329): Setting Network Configuration for NAT. (Driver: virtio)
2026-05-29 18:24:14 (7329): Enabling VM Network Access.
2026-05-29 18:24:14 (7329): Disabling USB Support for VM.
2026-05-29 18:24:14 (7329): Disabling COM Port Support for VM.
2026-05-29 18:24:14 (7329): Disabling LPT Port Support for VM.
2026-05-29 18:24:15 (7329): Disabling Audio Support for VM.
2026-05-29 18:24:15 (7329): Disabling Clipboard Support for VM.
2026-05-29 18:24:15 (7329): Disabling Drag and Drop Support for VM.
2026-05-29 18:24:15 (7329): Adding storage controller(s) to VM.
2026-05-29 18:24:15 (7329): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-05-29 18:24:15 (7329): Adding VirtualBox Guest Additions to VM.
2026-05-29 18:24:16 (7329): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-05-29 18:24:16 (7329): forwarding host port 39979 to guest port 80
2026-05-29 18:24:16 (7329): Enabling remote desktop for VM.
2026-05-29 18:24:16 (7329): Required extension pack not installed, remote desktop not enabled.
2026-05-29 18:24:16 (7329): Enabling shared directory for VM.
2026-05-29 18:24:16 (7329): Starting VM using VBoxManage interface. (boinc_e78325b7db5da903, slot#3)
2026-05-29 18:24:17 (7329): Successfully started VM. (PID = '7945')
2026-05-29 18:24:17 (7329): Reporting VM Process ID to BOINC.
2026-05-29 18:24:17 (7329): Guest Log: BIOS: VirtualBox 7.2.8
2026-05-29 18:24:17 (7329): Guest Log: CPUID EDX: 0x178bfbff
2026-05-29 18:24:17 (7329): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-05-29 18:24:17 (7329): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-05-29 18:24:17 (7329): VM state change detected. (old = 'poweredoff', new = 'running')
2026-05-29 18:24:17 (7329): Detected: Web Application Enabled (http://localhost:39979)
2026-05-29 18:24:17 (7329): Preference change detected
2026-05-29 18:24:17 (7329): Setting CPU throttle for VM. (100%)
2026-05-29 18:24:18 (7329): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-05-29 18:24:19 (7329): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-05-29 18:24:19 (7329): Guest Log: BIOS: Booting from Hard Disk...
2026-05-29 18:24:22 (7329): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-05-29 18:24:22 (7329): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-05-29 18:24:22 (7329): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-05-29 18:24:27 (7329): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-05-29 18:24:27 (7329): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-05-29 18:24:33 (7329): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-05-29 18:24:33 (7329): Guest Log: 00:00:00.000178 main     Log opened 2026-05-29T16:24:31.946832000Z
2026-05-29 18:24:33 (7329): Guest Log: 00:00:00.000272 main     OS Product: Linux
2026-05-29 18:24:33 (7329): Guest Log: 00:00:00.000299 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-05-29 18:24:33 (7329): Guest Log: 00:00:00.000317 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-05-29 18:24:33 (7329): Guest Log: 00:00:00.000334 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-05-29 18:24:33 (7329): Guest Log: 00:00:00.000335 main     Process ID: 1368
2026-05-29 18:24:33 (7329): Guest Log: 00:00:00.000335 main     Package type: LINUX_64BITS_GENERIC
2026-05-29 18:24:33 (7329): Guest Log: 00:00:00.000943 main     5.2.32 r132073 started. Verbose level = 0
2026-05-29 18:24:33 (7329): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-05-29 18:24:33 (7329): Guest Log: [INFO] Mounting shared directory
2026-05-29 18:24:33 (7329): Guest Log: [INFO] Checking for init_data.xml
2026-05-29 18:24:38 (7329): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-05-29 18:24:38 (7329): Guest Log: [INFO] Detected branch: prod
2026-05-29 18:24:38 (7329): Guest Log: This is the prod version of the ATLAS job wrapper
2026-05-29 18:24:38 (7329): Guest Log: Copying input files
2026-05-29 18:24:39 (7329): Guest Log: Copied input files into RunAtlas.
2026-05-29 18:24:39 (7329): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-05-29 18:24:39 (7329): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-05-29 18:24:39 (7329): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-05-29 18:24:39 (7329): Guest Log: Further information can be found at the LHC@home message board.
2026-05-29 18:25:45 (7329): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-05-29 18:25:45 (7329): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-05-29 18:25:45 (7329): Guest Log: 2.6.3.0 1644 1 30192 159938 4 1 3117654 4096001 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-05-29 18:25:46 (7329): Guest Log: copied the webapp to /var/www
2026-05-29 18:25:46 (7329): Guest Log: ATHENA_PROC_NUMBER=8
2026-05-29 18:25:46 (7329): Guest Log: ATHENA_CORE_NUMBER=8
2026-05-29 18:25:46 (7329): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-05-29 18:25:46 (7329): Guest Log:  *** Starting ATLAS job. (PandaID=7157460981 taskID=50533925) ***
2026-05-29 19:24:50 (7329): VM state change detected. (old = 'running', new = 'paused')
2026-05-29 21:13:31 (7329): VM state change detected. (old = 'paused', new = 'running')
2026-05-29 21:13:34 (7329): Guest Log: 01:00:19.148889 timesync vgsvcTimeSyncWorker: Radical host time change: 6 530 700 000 000ns (HostNow=1 780 081 979 801 000 000 ns HostLast=1 780 075 449 101 000 000 ns)
2026-05-29 21:13:44 (7329): Guest Log: 01:00:29.149912 timesync vgsvcTimeSyncWorker: Radical guest time change: 6 498 726 297 000ns (GuestNow=1 780 081 989 811 907 000 ns GuestLast=1 780 075 491 085 610 000 ns fSetTimeLastLoop=true )
2026-05-29 21:52:00 (7329): Status Report: Elapsed Time: '6000.000000'
2026-05-29 21:52:00 (7329): Status Report: CPU Time: '38110.630000'
2026-05-29 22:22:20 (7329): Guest Log:  *** Job finished ***
2026-05-29 22:22:20 (7329): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:24,394 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:24,394 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:37,036 | INFO     | [monitor] cgroup control has ended
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:37,223 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140598854563648)>', '<ExcThread(monitor, started 140598388430592)>']
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:38,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:38,043 | INFO     | [monitor] control thread has ended
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,250 | INFO     | all workflow threads have been joined
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,250 | INFO     | end of generic workflow (traces error code: 0)
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,250 | INFO     | traces error code: 0
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,251 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,388 [wrapper] ==== pilot stdout END ====
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,397 [wrapper] ==== wrapper stdout RESUME ====
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,407 [wrapper] pilotpid: 6141
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,415 [wrapper] Pilot exit status: 0
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,599 [wrapper] pandaids: 7157460981
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,651 [wrapper] cleanup supervisor_pilot 26790 6142
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,658 [wrapper] Test setup, not cleaning
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,666 [wrapper] apfmon messages muted
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,673 [wrapper] ==== wrapper stdout END ====
2026-05-29 22:22:20 (7329): Guest Log: 2026-05-29 20:21:42,681 [wrapper] ==== wrapper stderr END ====
2026-05-29 22:22:20 (7329): Guest Log:  *** Error codes and diagnostics ***
2026-05-29 22:22:20 (7329): Guest Log:     "exeErrorCode": 0,
2026-05-29 22:22:20 (7329): Guest Log:     "pilotErrorCode": 0,
2026-05-29 22:22:20 (7329): Guest Log:  *** Listing of results directory ***
2026-05-29 22:22:20 (7329): Guest Log: total 221840
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 atlas atlas      5631 May 29 07:51 queuedata.json
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 atlas atlas    709501 May 29 07:51 pilot3.tar.gz
2026-05-29 22:22:20 (7329): Guest Log: -rwx------. 1 atlas atlas     36281 May 29 07:51 runpilot2-wrapper.sh
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 atlas atlas     15667 May 29 16:24 start_atlas.sh
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 atlas atlas    722744 May 29 16:24 input.tar.gz
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 atlas atlas      8818 May 29 16:24 init_data.xml
2026-05-29 22:22:20 (7329): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 29 16:24 EVNT.50469837._000281.pool.root.1 -> /data/./ATLAS.root_0
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 atlas atlas      2512 May 29 16:25 pandaJob.out
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas    995563 May 29 16:28 agis_schedconf.cvmfs.json
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas   1251485 May 29 16:28 cric_ddmendpoints.json
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas       433 May 29 16:28 workernode_map.json
2026-05-29 22:22:20 (7329): Guest Log: drwx------. 5 atlas atlas      4096 May 29 16:29 pilot3
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas 221254535 May 29 20:20 HITS.50533925._007014.pool.root.1
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas      1030 May 29 20:20 memory_monitor_summary.json
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas         0 May 29 20:20 agis_ddmendpoints.agis.ALL.json
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas    329452 May 29 20:20 log.50533925._007014.job.log.tgz.1
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas        97 May 29 20:20 pilot_heartbeat.json
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas      6426 May 29 20:20 heartbeat_new.json
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas      6317 May 29 20:20 heartbeat.json
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas      4804 May 29 20:21 pilotlog.txt
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas    694665 May 29 20:21 log.50533925._007014.job.log.1
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas       357 May 29 20:21 output.list
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 atlas atlas       410 May 29 20:21 runtime_log
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas   1044480 May 29 20:21 result.tar.gz
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 atlas atlas      8375 May 29 20:21 runtime_log.err
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas       657 May 29 20:21 458438f030ba.diag
2026-05-29 22:22:20 (7329): Guest Log: Looking for outputfile HITS.50533925._007014.pool.root.1
2026-05-29 22:22:20 (7329): Guest Log: HITS file was successfully produced
2026-05-29 22:22:20 (7329): Guest Log: -rw-------. 1 atlas atlas 221254535 May 29 20:20 /home/atlas/RunAtlas/HITS.50533925._007014.pool.root.1
2026-05-29 22:22:20 (7329): Guest Log: Successfully finished the ATLAS job!
2026-05-29 22:22:20 (7329): Guest Log: Copying the results back to the shared directory!
2026-05-29 22:22:20 (7329): Guest Log:  *** Contents of shared directory: ***
2026-05-29 22:22:20 (7329): Guest Log: total 289768
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 root root 294922173 May 29 16:24 ATLAS.root_0
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 root root      8818 May 29 16:24 init_data.xml
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 root root    722744 May 29 16:24 input.tar.gz
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 root root   1044480 May 29  2026 result.tar.gz
2026-05-29 22:22:20 (7329): Guest Log: -rw-r--r--. 1 root root     15667 May 29 16:24 start_atlas.sh
2026-05-29 22:22:20 (7329): Guest Log:  *** Success! Shutting down the machine. ***
2026-05-29 22:22:20 (7329): VM Completion File Detected.
2026-05-29 22:22:20 (7329): Powering off VM.
2026-05-29 22:22:20 (7329): Successfully stopped VM.
2026-05-29 22:22:20 (7329): Deregistering VM. (boinc_e78325b7db5da903, slot#3)
2026-05-29 22:22:20 (7329): Removing network bandwidth throttle group from VM.
2026-05-29 22:22:20 (7329): Removing VM from VirtualBox.
2026-05-29 22:22:26 (7329): called boinc_finish(0)

</stderr_txt>
]]>

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