Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:46:06 (14327): wrapper (7.7.26015): starting
08:46:06 (14327): wrapper: running run_atlas (--nthreads 8)
[2026-05-29 08:46:06] Arguments: --nthreads 8
[2026-05-29 08:46:06] Threads: 8
[2026-05-29 08:46:06] Checking for CVMFS
[2026-05-29 08:46:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-29 08:46:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-29 08:46:09] Running cvmfs_config stat atlas.cern.ch
[2026-05-29 08:46:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-29 08:46:11] 2.11.2.0 28827 62757 127368 159923 1 54 13074914 25165825 913 130560 0 25736968 99.873 19478783 6282 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-29 08:46:11] CVMFS is ok
[2026-05-29 08:46:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-29 08:46:11] Checking for apptainer binary...
[2026-05-29 08:46:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-29 08:46:11] Running /usr/bin/apptainer --version
[2026-05-29 08:46:11] apptainer version 1.3.2-1.el7
[2026-05-29 08:46:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-29 08:46:26] cg-vwn243.simple-grid.lan
[2026-05-29 08:46:26] apptainer works
[2026-05-29 08:46:26] Set ATHENA_PROC_NUMBER=8
[2026-05-29 08:46:26] Set ATHENA_CORE_NUMBER=8
[2026-05-29 08:46:26] Starting ATLAS job with PandaID=7157447536
[2026-05-29 08:46:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-29 16:54:03]  *** The last 200 lines of the pilot log: ***
[2026-05-29 16:54:03] 2026-05-29 14:52:55,749 | INFO     | log transfer has been attempted: DONE
[2026-05-29 16:54:03] 2026-05-29 14:52:55,749 | INFO     | job 7157447536 has finished - writing final server update
[2026-05-29 16:54:03] 2026-05-29 14:52:55,749 | INFO     | total number of processed events: 400 (read)
[2026-05-29 16:54:03] 2026-05-29 14:52:55,751 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-7157447536/memory_monitor_summary.json (trf name=prmon)
[2026-05-29 16:54:03] 2026-05-29 14:52:55,752 | INFO     | extracted standard info from prmon json
[2026-05-29 16:54:03] 2026-05-29 14:52:55,752 | INFO     | extracted standard memory fields from prmon json
[2026-05-29 16:54:03] 2026-05-29 14:52:55,752 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-29 16:54:03] 2026-05-29 14:52:55,752 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-29 16:54:03] 2026-05-29 14:52:55,761 | INFO     | fitting pss+swap vs Time
[2026-05-29 16:54:03] 2026-05-29 14:52:55,762 | INFO     | sum of square deviations: 31378644152.5
[2026-05-29 16:54:03] 2026-05-29 14:52:55,776 | INFO     | sum of deviations: 333901889090.50006
[2026-05-29 16:54:03] 2026-05-29 14:52:55,776 | INFO     | mean x (centered): 0.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,777 | INFO     | mean y: 2470897.491416309
[2026-05-29 16:54:03] 2026-05-29 14:52:55,777 | INFO     | intersect: 2470897.491416309
[2026-05-29 16:54:03] 2026-05-29 14:52:55,778 | INFO     | chi2: 9.717103502533655
[2026-05-29 16:54:03] 2026-05-29 14:52:55,778 | INFO     | sum of square deviations: 30379397510.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,789 | INFO     | sum of deviations: 392455344980.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,789 | INFO     | mean x (centered): 0.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,789 | INFO     | mean y: 2479771.0130151846
[2026-05-29 16:54:03] 2026-05-29 14:52:55,790 | INFO     | intersect: 2479771.0130151846
[2026-05-29 16:54:03] 2026-05-29 14:52:55,790 | INFO     | chi2: 8.229964096229317
[2026-05-29 16:54:03] 2026-05-29 14:52:55,790 | INFO     | current chi2=8.229964096229317 (change=15.30434872816348 %)
[2026-05-29 16:54:03] 2026-05-29 14:52:55,791 | INFO     | right removable region: 460
[2026-05-29 16:54:03] 2026-05-29 14:52:55,791 | INFO     | sum of square deviations: 30379397510.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,798 | INFO     | sum of deviations: 167740202241.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,798 | INFO     | mean x (centered): 0.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,798 | INFO     | mean y: 2496248.09978308
[2026-05-29 16:54:03] 2026-05-29 14:52:55,798 | INFO     | intersect: 2496248.09978308
[2026-05-29 16:54:03] 2026-05-29 14:52:55,799 | INFO     | chi2: 4.889476884704969
[2026-05-29 16:54:03] 2026-05-29 14:52:55,799 | INFO     | current chi2=4.889476884704969 (change=49.68174535312835 %)
[2026-05-29 16:54:03] 2026-05-29 14:52:55,800 | INFO     | sum of square deviations: 29401593130.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,806 | INFO     | sum of deviations: 35042747012.50003
[2026-05-29 16:54:03] 2026-05-29 14:52:55,806 | INFO     | mean x (centered): 0.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,806 | INFO     | mean y: 2516933.8969298247
[2026-05-29 16:54:03] 2026-05-29 14:52:55,807 | INFO     | intersect: 2516933.8969298247
[2026-05-29 16:54:03] 2026-05-29 14:52:55,807 | INFO     | chi2: 1.973416329096254
[2026-05-29 16:54:03] 2026-05-29 14:52:55,808 | INFO     | current chi2=1.973416329096254 (change=59.6395202261943 %)
[2026-05-29 16:54:03] 2026-05-29 14:52:55,808 | INFO     | sum of square deviations: 28444998450.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,820 | INFO     | sum of deviations: 419320344.0000229
[2026-05-29 16:54:03] 2026-05-29 14:52:55,820 | INFO     | mean x (centered): 0.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,820 | INFO     | mean y: 2522426.509977827
[2026-05-29 16:54:03] 2026-05-29 14:52:55,820 | INFO     | intersect: 2522426.509977827
[2026-05-29 16:54:03] 2026-05-29 14:52:55,821 | INFO     | chi2: 1.6408499413698998
[2026-05-29 16:54:03] 2026-05-29 14:52:55,821 | INFO     | current chi2=1.6408499413698998 (change=16.8523176190934 %)
[2026-05-29 16:54:03] 2026-05-29 14:52:55,821 | INFO     | left removable region: 15
[2026-05-29 16:54:03] 2026-05-29 14:52:55,822 | INFO     | sum of square deviations: 27324754190.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,828 | INFO     | sum of deviations: 60332522078.99999
[2026-05-29 16:54:03] 2026-05-29 14:52:55,828 | INFO     | mean x (centered): 0.0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,829 | INFO     | mean y: 2532124.4741573036
[2026-05-29 16:54:03] 2026-05-29 14:52:55,829 | INFO     | intersect: 2532124.4741573036
[2026-05-29 16:54:03] 2026-05-29 14:52:55,829 | INFO     | chi2: 0.060009114948834145
[2026-05-29 16:54:03] 2026-05-29 14:52:55,830 | INFO     | current memory leak: 2.21 B/s (using 445 data points, chi2=0.06)
[2026-05-29 16:54:03] 2026-05-29 14:52:55,831 | INFO     | could have reported an average CPU frequency of 1999 MHz (19 samples)
[2026-05-29 16:54:03] 2026-05-29 14:52:55,863 | INFO     | ..............................
[2026-05-29 16:54:03] 2026-05-29 14:52:55,863 | INFO     | . Timing measurements:
[2026-05-29 16:54:03] 2026-05-29 14:52:55,864 | INFO     | . get job = 0 s
[2026-05-29 16:54:03] 2026-05-29 14:52:55,864 | INFO     | . initial setup = 129 s
[2026-05-29 16:54:03] 2026-05-29 14:52:55,864 | INFO     | . payload setup = 270 s
[2026-05-29 16:54:03] 2026-05-29 14:52:55,864 | INFO     | . stage-in = 0 s
[2026-05-29 16:54:03] 2026-05-29 14:52:55,864 | INFO     | . payload execution = 28499 s
[2026-05-29 16:54:03] 2026-05-29 14:52:55,864 | INFO     | . stage-out = 3 s
[2026-05-29 16:54:03] 2026-05-29 14:52:55,864 | INFO     | . log creation = 1 s
[2026-05-29 16:54:03] 2026-05-29 14:52:55,864 | INFO     | ..............................
[2026-05-29 16:54:03] 2026-05-29 14:52:55,997 | INFO     | 
[2026-05-29 16:54:03] 2026-05-29 14:52:55,997 | INFO     | job summary report
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | --------------------------------------------------
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | PanDA job id: 7157447536
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | task id: 50533748
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | errors: (none)
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | pilot state: finished 
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | transexitcode: 0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | exeerrorcode: 0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | exeerrordiag: 
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | exitcode: 0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | exitmsg: OK
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | cpuconsumptiontime: 116074 s
[2026-05-29 16:54:03] 2026-05-29 14:52:55,998 | INFO     | nevents: 400
[2026-05-29 16:54:03] 2026-05-29 14:52:55,999 | INFO     | neventsw: 0
[2026-05-29 16:54:03] 2026-05-29 14:52:55,999 | INFO     | pid: 22853
[2026-05-29 16:54:03] 2026-05-29 14:52:55,999 | INFO     | pgrp: 22853
[2026-05-29 16:54:03] 2026-05-29 14:52:55,999 | INFO     | corecount: 8
[2026-05-29 16:54:03] 2026-05-29 14:52:55,999 | INFO     | event service: False
[2026-05-29 16:54:03] 2026-05-29 14:52:55,999 | INFO     | sizes: {0: 2265237, 1: 2266295, 2: 2267751, 13: 2267751, 28773: 2304888, 28779: 2314070, 28780: 2314208}
[2026-05-29 16:54:03] 2026-05-29 14:52:55,999 | INFO     | --------------------------------------------------
[2026-05-29 16:54:03] 2026-05-29 14:52:55,999 | INFO     | 
[2026-05-29 16:54:03] 2026-05-29 14:52:55,999 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-05-29 16:54:03] 2026-05-29 14:52:56,486 | INFO     | PID=18377 has CPU usage=9.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-29 16:54:03] 2026-05-29 14:52:56,487 | INFO     | .. there are 2 such processes running
[2026-05-29 16:54:03] 2026-05-29 14:52:56,536 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,537 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,537 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,537 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,537 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,537 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,537 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,537 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,538 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,538 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,538 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,538 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,538 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,538 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,538 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,538 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,538 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,539 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-29 16:54:03] 2026-05-29 14:52:56,539 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,539 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-29 16:54:03] 2026-05-29 14:52:56,539 | INFO     | job 7157447536 has completed (purged errors)
[2026-05-29 16:54:03] 2026-05-29 14:52:56,539 | INFO     | overall cleanup function is called
[2026-05-29 16:54:03] 2026-05-29 14:52:57,548 | INFO     | --- collectZombieJob: --- 10, [22853]
[2026-05-29 16:54:03] 2026-05-29 14:52:57,548 | INFO     | zombie collector waiting for pid 22853
[2026-05-29 16:54:03] 2026-05-29 14:52:57,548 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-29 16:54:03] 2026-05-29 14:52:57,548 | INFO     | collected zombie processes
[2026-05-29 16:54:03] 2026-05-29 14:52:57,549 | INFO     | will attempt to kill all subprocesses of pid=22853
[2026-05-29 16:54:03] 2026-05-29 14:52:57,610 | INFO     | process IDs to be killed: [22853] (in reverse order)
[2026-05-29 16:54:03] 2026-05-29 14:52:58,638 | WARNING  | found no corresponding commands to process id(s)
[2026-05-29 16:54:03] 2026-05-29 14:52:58,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-29 16:54:03] 2026-05-29 14:52:58,640 | INFO     | did not find any defunct processes belonging to 22853
[2026-05-29 16:54:03] 2026-05-29 14:52:58,642 | INFO     | did not find any defunct processes belonging to 22853
[2026-05-29 16:54:03] 2026-05-29 14:52:58,642 | INFO     | Ready for new job
[2026-05-29 16:54:03] 2026-05-29 14:52:58,644 | INFO     | ***************************************
[2026-05-29 16:54:03] 2026-05-29 14:52:58,644 | INFO     | ***  PanDA Pilot version 3.13.1.30  ***
[2026-05-29 16:54:03] 2026-05-29 14:52:58,644 | INFO     | ***************************************
[2026-05-29 16:54:03] 2026-05-29 14:52:58,645 | INFO     | 
[2026-05-29 16:54:03] 2026-05-29 14:52:58,645 | INFO     | pilot is running in a VM
[2026-05-29 16:54:03] 2026-05-29 14:52:58,645 | INFO     | architecture information:
[2026-05-29 16:54:03] 2026-05-29 14:52:58,646 | INFO     | executing command: cat /etc/os-release
[2026-05-29 16:54:03] 2026-05-29 14:52:58,954 | INFO     | cat /etc/os-release:
[2026-05-29 16:54:03] NAME="CentOS Linux"
[2026-05-29 16:54:03] VERSION="7 (Core)"
[2026-05-29 16:54:03] ID="centos"
[2026-05-29 16:54:03] ID_LIKE="rhel fedora"
[2026-05-29 16:54:03] VERSION_ID="7"
[2026-05-29 16:54:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-29 16:54:03] ANSI_COLOR="0;31"
[2026-05-29 16:54:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-29 16:54:03] HOME_URL="https://www.centos.org/"
[2026-05-29 16:54:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-29 16:54:03] 
[2026-05-29 16:54:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-29 16:54:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-29 16:54:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-29 16:54:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-29 16:54:03] 
[2026-05-29 16:54:03] 2026-05-29 14:52:58,955 | INFO     | ***************************************
[2026-05-29 16:54:03] 2026-05-29 14:52:59,458 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-05-29 16:54:03] 2026-05-29 14:52:59,751 | INFO     | sufficient remaining disk space (497482203136 B)
[2026-05-29 16:54:03] 2026-05-29 14:52:59,751 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-29 16:54:03] 2026-05-29 14:52:59,751 | INFO     | current server update state: UPDATING_FINAL
[2026-05-29 16:54:03] 2026-05-29 14:52:59,751 | INFO     | update_server=False
[2026-05-29 16:54:03] 2026-05-29 14:52:59,752 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-29 16:54:03] 2026-05-29 14:52:59,839 | INFO     | all data control threads have been joined
[2026-05-29 16:54:03] 2026-05-29 14:52:59,846 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-29 16:54:03] 2026-05-29 14:52:59,846 | INFO     | aborting loop
[2026-05-29 16:54:03] 2026-05-29 14:52:59,965 | INFO     | all payload control threads have been joined
[2026-05-29 16:54:03] 2026-05-29 14:53:00,253 | INFO     | all job control threads have been joined
[2026-05-29 16:54:03] 2026-05-29 14:53:00,757 | INFO     | [job] retrieve thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:00,758 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-29 16:54:03] 2026-05-29 14:53:00,845 | INFO     | [data] control thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:00,856 | INFO     | [job] job monitor thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:00,945 | INFO     | [payload] validate_pre thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:00,971 | INFO     | [payload] control thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:01,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-29 16:54:03] 2026-05-29 14:53:01,168 | INFO     | [job] validate thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:01,259 | INFO     | [job] control thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:01,291 | INFO     | [payload] execute_payloads thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:01,399 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-29 16:54:03] 2026-05-29 14:53:01,746 | INFO     | [job] create_data_payload thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:01,859 | INFO     | [data] copytool_in thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:01,945 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:01,982 | INFO     | [payload] failed_post thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:02,018 | INFO     | [job] queue monitor thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:02,124 | INFO     | [payload] validate_post thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:02,765 | INFO     | [data] copytool_out thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:05,409 | INFO     | [data] queue_monitor thread has finished
[2026-05-29 16:54:03] 2026-05-29 14:53:28,627 | INFO     | PID=18377 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-29 16:54:03] 2026-05-29 14:53:28,627 | INFO     | .. there are 2 such processes running
[2026-05-29 16:54:03] 2026-05-29 14:53:28,633 | INFO     | found 0 job(s) in 20 queues
[2026-05-29 16:54:03] 2026-05-29 14:53:28,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-29 16:54:03] 2026-05-29 14:53:28,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-29 16:54:03] 2026-05-29 14:53:52,073 | INFO     | [monitor] cgroup control has ended
[2026-05-29 16:54:03] 2026-05-29 14:53:52,811 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139865418454848)>', '<ExcThread(monitor, started 139864989226752)>']
[2026-05-29 16:54:03] 2026-05-29 14:53:53,783 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-29 16:54:03] 2026-05-29 14:53:53,783 | INFO     | [monitor] control thread has ended
[2026-05-29 16:54:03] 2026-05-29 14:53:57,837 | INFO     | all workflow threads have been joined
[2026-05-29 16:54:03] 2026-05-29 14:53:57,837 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-29 16:54:03] 2026-05-29 14:53:57,838 | INFO     | traces error code: 0
[2026-05-29 16:54:03] 2026-05-29 14:53:57,838 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-29 16:54:03] 2026-05-29 14:53:58,353 [wrapper] ==== pilot stdout END ====
[2026-05-29 16:54:03] 2026-05-29 14:53:58,471 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-29 16:54:03] 2026-05-29 14:53:58,569 [wrapper] pilotpid: 18377
[2026-05-29 16:54:03] 2026-05-29 14:53:58,679 [wrapper] Pilot exit status: 0
[2026-05-29 16:54:03] 2026-05-29 14:53:59,185 [wrapper] pandaids: 7157447536
[2026-05-29 16:54:03] 2026-05-29 14:54:00,408 [wrapper] cleanup supervisor_pilot 10872 18378
[2026-05-29 16:54:03] 2026-05-29 14:54:00,501 [wrapper] Test setup, not cleaning
[2026-05-29 16:54:03] 2026-05-29 14:54:00,586 [wrapper] apfmon messages muted
[2026-05-29 16:54:03] 2026-05-29 14:54:00,684 [wrapper] ==== wrapper stdout END ====
[2026-05-29 16:54:03] 2026-05-29 14:54:00,792 [wrapper] ==== wrapper stderr END ====
[2026-05-29 16:54:03]  *** Error codes and diagnostics ***
[2026-05-29 16:54:03]     "exeErrorCode": 0,
[2026-05-29 16:54:03]     "pilotErrorCode": 0,
[2026-05-29 16:54:03]  *** Listing of results directory ***
[2026-05-29 16:54:03] total 529448
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc    709501 May 28 22:34 pilot3.tar.gz
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc      5631 May 28 23:26 queuedata.json
[2026-05-29 16:54:03] -rwx------. 1 boinc boinc     36281 May 28 23:27 runpilot2-wrapper.sh
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc       100 May 29 08:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-29 16:54:03] -rwxr-xr-x. 1 boinc boinc      7986 May 29 08:46 run_atlas
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc       105 May 29 08:46 job.xml
[2026-05-29 16:54:03] -rw-r--r--. 2 boinc boinc 268110625 May 29 08:46 EVNT.50469639._000019.pool.root.1
[2026-05-29 16:54:03] -rw-r--r--. 2 boinc boinc     15667 May 29 08:46 start_atlas.sh
[2026-05-29 16:54:03] drwxrwx--x. 2 boinc boinc        68 May 29 08:46 shared
[2026-05-29 16:54:03] -rw-r--r--. 2 boinc boinc    722752 May 29 08:46 input.tar.gz
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc      6306 May 29 08:46 init_data.xml
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc         0 May 29 08:46 boinc_lockfile
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc      2612 May 29 08:46 pandaJob.out
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc   1251485 May 29 08:50 cric_ddmendpoints.json
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc       415 May 29 08:52 workernode_map.json
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc    996114 May 29 08:53 agis_schedconf.cvmfs.json
[2026-05-29 16:54:03] drwx------. 5 boinc boinc      4096 May 29 08:53 pilot3
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc 263812969 May 29 16:51 HITS.50533748._000451.pool.root.1
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc       490 May 29 16:51 boinc_task_state.xml
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc      1018 May 29 16:52 memory_monitor_summary.json
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc         0 May 29 16:52 agis_ddmendpoints.agis.ALL.json
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc    514311 May 29 16:52 log.50533748._000451.job.log.tgz.1
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc      6383 May 29 16:52 heartbeat_new.json
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc      6274 May 29 16:52 heartbeat.json
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc        95 May 29 16:53 pilot_heartbeat.json
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc      8192 May 29 16:53 boinc_mmap_file
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc        29 May 29 16:53 wrapper_checkpoint.txt
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc      4883 May 29 16:53 pilotlog.txt
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc   2642239 May 29 16:54 log.50533748._000451.job.log.1
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc       357 May 29 16:54 output.list
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc       410 May 29 16:54 runtime_log
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc   3174400 May 29 16:54 result.tar.gz
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc      8439 May 29 16:54 runtime_log.err
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc       658 May 29 16:54 b328a367372b.diag
[2026-05-29 16:54:03] -rw-r--r--. 1 boinc boinc     20705 May 29 16:54 stderr.txt
[2026-05-29 16:54:03] HITS file was successfully produced:
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc 263812969 May 29 16:51 shared/HITS.pool.root.1
[2026-05-29 16:54:03]  *** Contents of shared directory: ***
[2026-05-29 16:54:03] total 523284
[2026-05-29 16:54:03] -rw-r--r--. 2 boinc boinc 268110625 May 29 08:46 ATLAS.root_0
[2026-05-29 16:54:03] -rw-r--r--. 2 boinc boinc     15667 May 29 08:46 start_atlas.sh
[2026-05-29 16:54:03] -rw-r--r--. 2 boinc boinc    722752 May 29 08:46 input.tar.gz
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc 263812969 May 29 16:51 HITS.pool.root.1
[2026-05-29 16:54:03] -rw-------. 1 boinc boinc   3174400 May 29 16:54 result.tar.gz
16:54:05 (14327): run_atlas exited; CPU time 116360.506097
16:54:05 (14327): called boinc_finish(0)

</stderr_txt>
]]>

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