Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2026-05-28 20:38:21 (3532): vboxwrapper version 26210
2026-05-28 20:38:21 (3532): BOINC client version: 7.16.11
2026-05-28 20:38:22 (3532): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2026-05-28 20:38:22 (3532): Successfully copied 'init_data.xml' to the shared directory.
2026-05-28 20:38:22 (3532): Create VM. (boinc_c185bf99f17431c0, slot#2)
2026-05-28 20:38:23 (3532): Setting Memory Size for VM. (4300MB)
2026-05-28 20:38:23 (3532): Setting CPU Count for VM. (3)
2026-05-28 20:38:24 (3532): Setting Chipset Options for VM.
2026-05-28 20:38:24 (3532): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-05-28 20:38:24 (3532): Setting Boot Options for VM.
2026-05-28 20:38:25 (3532): Setting Network Configuration for NAT. (Driver: virtio)
2026-05-28 20:38:25 (3532): Enabling VM Network Access.
2026-05-28 20:38:25 (3532): Disabling USB Support for VM.
2026-05-28 20:38:25 (3532): Disabling COM Port Support for VM.
2026-05-28 20:38:26 (3532): Disabling LPT Port Support for VM.
2026-05-28 20:38:26 (3532): Disabling Audio Support for VM.
2026-05-28 20:38:26 (3532): Disabling Clipboard Support for VM.
2026-05-28 20:38:27 (3532): Disabling Drag and Drop Support for VM.
2026-05-28 20:38:27 (3532): Adding storage controller(s) to VM.
2026-05-28 20:38:27 (3532): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-05-28 20:38:28 (3532): Adding VirtualBox Guest Additions to VM.
2026-05-28 20:38:28 (3532): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-05-28 20:38:29 (3532): forwarding host port 59267 to guest port 80
2026-05-28 20:38:29 (3532): Enabling remote desktop for VM.
2026-05-28 20:38:29 (3532): Required extension pack not installed, remote desktop not enabled.
2026-05-28 20:38:29 (3532): Enabling shared directory for VM.
2026-05-28 20:38:30 (3532): Starting VM using VBoxManage interface. (boinc_c185bf99f17431c0, slot#2)
2026-05-28 20:38:33 (3532): Successfully started VM. (PID = '560')
2026-05-28 20:38:33 (3532): Reporting VM Process ID to BOINC.
2026-05-28 20:38:33 (3532): Guest Log: BIOS: VirtualBox 6.1.12
2026-05-28 20:38:33 (3532): Guest Log: CPUID EDX: 0x178bfbff
2026-05-28 20:38:33 (3532): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-05-28 20:38:33 (3532): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-05-28 20:38:33 (3532): VM state change detected. (old = 'poweredoff', new = 'running')
2026-05-28 20:38:33 (3532): Detected: Web Application Enabled (http://localhost:59267)
2026-05-28 20:38:33 (3532): Preference change detected
2026-05-28 20:38:33 (3532): Setting CPU throttle for VM. (100%)
2026-05-28 20:38:33 (3532): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2026-05-28 20:38:35 (3532): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-05-28 20:38:35 (3532): Guest Log: BIOS: Booting from Hard Disk...
2026-05-28 20:38:38 (3532): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-05-28 20:38:38 (3532): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-05-28 20:38:38 (3532): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-05-28 20:38:44 (3532): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-05-28 20:38:44 (3532): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2026-05-28 20:38:49 (3532): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-05-28 20:38:49 (3532): Guest Log: 00:00:00.000178 main     Log opened 2026-05-28T20:38:48.042498000Z
2026-05-28 20:38:49 (3532): Guest Log: 00:00:00.000277 main     OS Product: Linux
2026-05-28 20:38:49 (3532): Guest Log: 00:00:00.000301 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-05-28 20:38:49 (3532): Guest Log: 00:00:00.000320 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-05-28 20:38:49 (3532): Guest Log: 00:00:00.000339 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-05-28 20:38:49 (3532): Guest Log: 00:00:00.000340 main     Process ID: 1286
2026-05-28 20:38:49 (3532): Guest Log: 00:00:00.000340 main     Package type: LINUX_64BITS_GENERIC
2026-05-28 20:38:49 (3532): Guest Log: 00:00:00.001143 main     5.2.32 r132073 started. Verbose level = 0
2026-05-28 20:38:49 (3532): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-05-28 20:38:49 (3532): Guest Log: [INFO] Mounting shared directory
2026-05-28 20:38:49 (3532): Guest Log: [INFO] Checking for init_data.xml
2026-05-28 20:38:51 (3532): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-05-28 20:38:51 (3532): Guest Log: [INFO] Detected branch: prod
2026-05-28 20:38:51 (3532): Guest Log: This is the prod version of the ATLAS job wrapper
2026-05-28 20:38:51 (3532): Guest Log: Copying input files
2026-05-28 20:38:53 (3532): Guest Log: Copied input files into RunAtlas.
2026-05-28 20:38:53 (3532): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-05-28 20:38:53 (3532): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-05-28 20:38:53 (3532): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-05-28 20:38:53 (3532): Guest Log: Further information can be found at the LHC@home message board.
2026-05-28 20:38:59 (3532): Guest Log: 00:00:10.017134 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 935 394 000ns (GuestNow=1 779 993 539 109 478 000 ns GuestLast=1 780 000 728 044 872 000 ns fSetTimeLastLoop=true )
2026-05-28 20:40:00 (3532): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-05-28 20:40:00 (3532): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-05-28 20:40:00 (3532): Guest Log: 2.6.3.0 1560 1 30188 159905 4 1 3117654 4096001 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-05-28 20:40:01 (3532): Guest Log: copied the webapp to /var/www
2026-05-28 20:40:01 (3532): Guest Log: ATHENA_PROC_NUMBER=3
2026-05-28 20:40:01 (3532): Guest Log: ATHENA_CORE_NUMBER=3
2026-05-28 20:40:01 (3532): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-05-28 20:40:01 (3532): Guest Log:  *** Starting ATLAS job. (PandaID=7154080872 taskID=49545126) ***
2026-05-28 22:19:01 (3532): Status Report: Elapsed Time: '6000.000000'
2026-05-28 22:19:01 (3532): Status Report: CPU Time: '17032.593750'
2026-05-28 22:41:19 (3532): VM state change detected. (old = 'running', new = 'paused')
2026-05-28 23:45:08 (3532): Guest Log: 02:02:31.929223 timesync vgsvcTimeSyncWorker: Radical host time change: 3 828 673 000 000ns (HostNow=1 780 004 654 777 000 000 ns HostLast=1 780 000 826 104 000 000 ns)
2026-05-28 23:45:08 (3532): VM state change detected. (old = 'paused', new = 'running')
2026-05-28 23:45:18 (3532): Guest Log: 02:02:41.930191 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 783 756 422 000ns (GuestNow=1 780 004 664 778 023 000 ns GuestLast=1 780 000 881 021 601 000 ns fSetTimeLastLoop=true )
2026-05-29 00:45:37 (3532): Guest Log:  *** Job finished ***
2026-05-29 00:45:37 (3532): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:32,459 | INFO     | all workflow threads have been joined
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:32,460 | INFO     | end of generic workflow (traces error code: 0)
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:32,460 | INFO     | traces error code: 0
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:32,460 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:45,880 | INFO     | PID=5964 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:45,881 | INFO     | found 0 job(s) in 20 queues
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:45,882 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:45,882 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:45,882 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:45,882 | INFO     | [monitor] control thread has ended
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:45,999 [wrapper] ==== pilot stdout END ====
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:46,004 [wrapper] ==== wrapper stdout RESUME ====
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:46,009 [wrapper] pilotpid: 5964
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:46,014 [wrapper] Pilot exit status: 0
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:46,133 [wrapper] pandaids: 7154080872
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:46,165 [wrapper] cleanup supervisor_pilot 27296 5965
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:46,171 [wrapper] Test setup, not cleaning
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:46,176 [wrapper] apfmon messages muted
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:46,182 [wrapper] ==== wrapper stdout END ====
2026-05-29 00:45:37 (3532): Guest Log: 2026-05-28 22:44:46,187 [wrapper] ==== wrapper stderr END ====
2026-05-29 00:45:37 (3532): Guest Log:  *** Error codes and diagnostics ***
2026-05-29 00:45:37 (3532): Guest Log:     "exeErrorCode": 0,
2026-05-29 00:45:37 (3532): Guest Log:     "pilotErrorCode": 0,
2026-05-29 00:45:37 (3532): Guest Log:  *** Listing of results directory ***
2026-05-29 00:45:37 (3532): Guest Log: total 174712
2026-05-29 00:45:37 (3532): Guest Log: -rw-r--r--. 1 atlas atlas    709501 May 26 22:42 pilot3.tar.gz
2026-05-29 00:45:37 (3532): Guest Log: -rw-r--r--. 1 atlas atlas      5631 May 26 22:45 queuedata.json
2026-05-29 00:45:37 (3532): Guest Log: -rwx------. 1 atlas atlas     36281 May 26 22:45 runpilot2-wrapper.sh
2026-05-29 00:45:37 (3532): Guest Log: -rwxr-xr-x. 1 atlas atlas      8755 May 28 18:38 init_data.xml
2026-05-29 00:45:37 (3532): Guest Log: -rwxr-xr-x. 1 atlas atlas    722758 May 28 18:38 input.tar.gz
2026-05-29 00:45:37 (3532): Guest Log: -rwxr-xr-x. 1 atlas atlas     15667 May 28 18:38 start_atlas.sh
2026-05-29 00:45:37 (3532): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 28 18:38 EVNT.49539704._000599.pool.root.1 -> /data/./ATLAS.root_0
2026-05-29 00:45:37 (3532): Guest Log: -rw-r--r--. 1 atlas atlas      2570 May 28 18:40 pandaJob.out
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas    996089 May 28 18:41 agis_schedconf.cvmfs.json
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas   1251485 May 28 18:41 cric_ddmendpoints.json
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas       424 May 28 18:41 workernode_map.json
2026-05-29 00:45:37 (3532): Guest Log: drwx------. 5 atlas atlas      4096 May 28 18:41 pilot3
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas 172487433 May 28 22:43 HITS.49545126._015145.pool.root.1
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas      1029 May 28 22:44 memory_monitor_summary.json
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas         0 May 28 22:44 agis_ddmendpoints.agis.ALL.json
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas    278682 May 28 22:44 log.49545126._015145.job.log.tgz.1
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas      6445 May 28 22:44 heartbeat_new.json
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas      6336 May 28 22:44 heartbeat.json
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas       744 May 28 22:44 pilotlog.txt
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas        97 May 28 22:44 pilot_heartbeat.json
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas    999255 May 28 22:44 log.49545126._015145.job.log.1
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas       357 May 28 22:44 output.list
2026-05-29 00:45:37 (3532): Guest Log: -rw-r--r--. 1 atlas atlas       410 May 28 22:44 runtime_log
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas   1300480 May 28 22:44 result.tar.gz
2026-05-29 00:45:37 (3532): Guest Log: -rw-r--r--. 1 atlas atlas      8369 May 28 22:44 runtime_log.err
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas       654 May 28 22:44 229a481ff228.diag
2026-05-29 00:45:37 (3532): Guest Log: Looking for outputfile HITS.49545126._015145.pool.root.1
2026-05-29 00:45:37 (3532): Guest Log: HITS file was successfully produced
2026-05-29 00:45:37 (3532): Guest Log: -rw-------. 1 atlas atlas 172487433 May 28 22:43 /home/atlas/RunAtlas/HITS.49545126._015145.pool.root.1
2026-05-29 00:45:38 (3532): Guest Log: Successfully finished the ATLAS job!
2026-05-29 00:45:38 (3532): Guest Log: Copying the results back to the shared directory!
2026-05-29 00:45:38 (3532): Guest Log:  *** Contents of shared directory: ***
2026-05-29 00:45:38 (3532): Guest Log: total 428856
2026-05-29 00:45:38 (3532): Guest Log: -rwxrwxrwx. 1 root root 264601475 May 28 18:38 ATLAS.root_0
2026-05-29 00:45:38 (3532): Guest Log: -rwxrwxrwx. 1 root root 172487433 May 28  2026 HITS.pool.root.1
2026-05-29 00:45:38 (3532): Guest Log: -rwxrwxrwx. 1 root root      8755 May 28 18:38 init_data.xml
2026-05-29 00:45:38 (3532): Guest Log: -rwxrwxrwx. 1 root root    722758 May 28 15:53 input.tar.gz
2026-05-29 00:45:38 (3532): Guest Log: -rwxrwxrwx. 1 root root   1300480 May 28  2026 result.tar.gz
2026-05-29 00:45:38 (3532): Guest Log: -rwxrwxrwx. 1 root root     15667 May 28 15:53 start_atlas.sh
2026-05-29 00:45:38 (3532): Guest Log:  *** Success! Shutting down the machine. ***
2026-05-29 00:45:38 (3532): VM Completion File Detected.
2026-05-29 00:45:38 (3532): Powering off VM.
2026-05-29 00:45:39 (3532): Successfully stopped VM.
2026-05-29 00:45:39 (3532): Deregistering VM. (boinc_c185bf99f17431c0, slot#2)
2026-05-29 00:45:40 (3532): Removing network bandwidth throttle group from VM.
2026-05-29 00:45:40 (3532): Removing VM from VirtualBox.
2026-05-29 00:45:45 (3532): called boinc_finish(0)

</stderr_txt>
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