Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:19:20 (2761094): wrapper (7.7.26015): starting
14:19:20 (2761094): wrapper: running run_atlas (--nthreads 4)
[2026-05-28 14:19:20] Arguments: --nthreads 4
[2026-05-28 14:19:20] Threads: 4
[2026-05-28 14:19:20] Checking for CVMFS
[2026-05-28 14:19:20] No cvmfs_config command found, will try listing directly
[2026-05-28 14:19:20] CVMFS is ok
[2026-05-28 14:19:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-28 14:19:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-28 14:19:20] Further information can be found at the LHC@home message board.
[2026-05-28 14:19:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-28 14:19:20] Checking for apptainer binary...
[2026-05-28 14:19:20] which: no apptainer in ((null))
[2026-05-28 14:19:20] apptainer is not installed, using version from CVMFS
[2026-05-28 14:19:20] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-28 14:19:20] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot60/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut17.grid.cesnet.cz
[2026-05-28 14:19:20] apptainer works
[2026-05-28 14:19:20] Set ATHENA_PROC_NUMBER=4
[2026-05-28 14:19:20] Set ATHENA_CORE_NUMBER=4
[2026-05-28 14:19:20] Starting ATLAS job with PandaID=7155879047
[2026-05-28 14:19:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot60/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-28 16:38:03]  *** The last 200 lines of the pilot log: ***
[2026-05-28 16:38:03] 2026-05-28 14:37:20,705 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot60/slots/2/workernode_map.json
[2026-05-28 16:38:03] 2026-05-28 14:37:20,705 | INFO     | this job has now completed (state=finished)
[2026-05-28 16:38:03] 2026-05-28 14:37:20,705 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-28 16:38:03] 2026-05-28 14:37:20,705 | INFO     | log transfer has been attempted: DONE
[2026-05-28 16:38:03] 2026-05-28 14:37:20,705 | INFO     | job 7155879047 has finished - writing final server update
[2026-05-28 16:38:03] 2026-05-28 14:37:20,706 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2069553/.job.ad'
[2026-05-28 16:38:03] 2026-05-28 14:37:20,706 | INFO     | total number of processed events: 400 (read)
[2026-05-28 16:38:03] 2026-05-28 14:37:20,729 | INFO     | using path: /var/lib/boinc/var/slot60/slots/2/PanDA_Pilot-7155879047/memory_monitor_summary.json (trf name=prmon)
[2026-05-28 16:38:03] 2026-05-28 14:37:20,730 | INFO     | extracted standard info from prmon json
[2026-05-28 16:38:03] 2026-05-28 14:37:20,730 | INFO     | extracted standard memory fields from prmon json
[2026-05-28 16:38:03] 2026-05-28 14:37:20,730 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-28 16:38:03] 2026-05-28 14:37:20,731 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-28 16:38:03] 2026-05-28 14:37:20,733 | INFO     | fitting pss+swap vs Time
[2026-05-28 16:38:03] 2026-05-28 14:37:20,733 | INFO     | sum of square deviations: 762879420.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,734 | INFO     | sum of deviations: 9056752472.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,734 | INFO     | mean x (centered): 0.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,734 | INFO     | mean y: 2339222.8962962963
[2026-05-28 16:38:03] 2026-05-28 14:37:20,734 | INFO     | intersect: 2339222.8962962963
[2026-05-28 16:38:03] 2026-05-28 14:37:20,735 | INFO     | chi2: 1.3276037296557326
[2026-05-28 16:38:03] 2026-05-28 14:37:20,735 | INFO     | sum of square deviations: 681212772.5
[2026-05-28 16:38:03] 2026-05-28 14:37:20,736 | INFO     | sum of deviations: 8868557498.499998
[2026-05-28 16:38:03] 2026-05-28 14:37:20,736 | INFO     | mean x (centered): 0.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,736 | INFO     | mean y: 2338871.3307692306
[2026-05-28 16:38:03] 2026-05-28 14:37:20,736 | INFO     | intersect: 2338871.3307692306
[2026-05-28 16:38:03] 2026-05-28 14:37:20,736 | INFO     | chi2: 1.3292944398478972
[2026-05-28 16:38:03] 2026-05-28 14:37:20,736 | INFO     | current chi2=1.3292944398478972 (change=-0.12735051539837328 %)
[2026-05-28 16:38:03] 2026-05-28 14:37:20,737 | INFO     | right removable region: 129
[2026-05-28 16:38:03] 2026-05-28 14:37:20,737 | INFO     | sum of square deviations: 681212772.5
[2026-05-28 16:38:03] 2026-05-28 14:37:20,738 | INFO     | sum of deviations: -7292479057.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,738 | INFO     | mean x (centered): 0.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,738 | INFO     | mean y: 2369112.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,738 | INFO     | intersect: 2369112.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,738 | INFO     | chi2: 0.007955116397611744
[2026-05-28 16:38:03] 2026-05-28 14:37:20,738 | INFO     | current chi2=0.007955116397611744 (change=99.40079134911178 %)
[2026-05-28 16:38:03] 2026-05-28 14:37:20,738 | INFO     | sum of square deviations: 605592750.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,739 | INFO     | sum of deviations: -7071163188.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,739 | INFO     | mean x (centered): 0.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,739 | INFO     | mean y: 2368659.936
[2026-05-28 16:38:03] 2026-05-28 14:37:20,739 | INFO     | intersect: 2368659.936
[2026-05-28 16:38:03] 2026-05-28 14:37:20,740 | INFO     | chi2: 0.007039582969380142
[2026-05-28 16:38:03] 2026-05-28 14:37:20,740 | INFO     | current chi2=0.007039582969380142 (change=11.508737050113558 %)
[2026-05-28 16:38:03] 2026-05-28 14:37:20,740 | INFO     | left removable region: 10
[2026-05-28 16:38:03] 2026-05-28 14:37:20,740 | INFO     | sum of square deviations: 522502820.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,741 | INFO     | sum of deviations: -6604949582.000001
[2026-05-28 16:38:03] 2026-05-28 14:37:20,741 | INFO     | mean x (centered): 0.0
[2026-05-28 16:38:03] 2026-05-28 14:37:20,741 | INFO     | mean y: 2369687.74789916
[2026-05-28 16:38:03] 2026-05-28 14:37:20,741 | INFO     | intersect: 2369687.74789916
[2026-05-28 16:38:03] 2026-05-28 14:37:20,741 | INFO     | chi2: 0.006407828798030739
[2026-05-28 16:38:03] 2026-05-28 14:37:20,742 | INFO     | current memory leak: -12.64 B/s (using 119 data points, chi2=0.01)
[2026-05-28 16:38:03] 2026-05-28 14:37:20,742 | INFO     | could have reported an average CPU frequency of 2740 MHz (8 samples)
[2026-05-28 16:38:03] 2026-05-28 14:37:20,743 | INFO     | ..............................
[2026-05-28 16:38:03] 2026-05-28 14:37:20,743 | INFO     | . Timing measurements:
[2026-05-28 16:38:03] 2026-05-28 14:37:20,743 | INFO     | . get job = 0 s
[2026-05-28 16:38:03] 2026-05-28 14:37:20,743 | INFO     | . initial setup = 8 s
[2026-05-28 16:38:03] 2026-05-28 14:37:20,743 | INFO     | . payload setup = 14 s
[2026-05-28 16:38:03] 2026-05-28 14:37:20,743 | INFO     | . stage-in = 0 s
[2026-05-28 16:38:03] 2026-05-28 14:37:20,743 | INFO     | . payload execution = 8223 s
[2026-05-28 16:38:03] 2026-05-28 14:37:20,743 | INFO     | . stage-out = 1 s
[2026-05-28 16:38:03] 2026-05-28 14:37:20,744 | INFO     | . log creation = 0 s
[2026-05-28 16:38:03] 2026-05-28 14:37:20,744 | INFO     | ..............................
[2026-05-28 16:38:03] 2026-05-28 14:37:21,244 | INFO     | 
[2026-05-28 16:38:03] 2026-05-28 14:37:21,244 | INFO     | job summary report
[2026-05-28 16:38:03] 2026-05-28 14:37:21,244 | INFO     | --------------------------------------------------
[2026-05-28 16:38:03] 2026-05-28 14:37:21,244 | INFO     | PanDA job id: 7155879047
[2026-05-28 16:38:03] 2026-05-28 14:37:21,244 | INFO     | task id: 49545102
[2026-05-28 16:38:03] 2026-05-28 14:37:21,244 | INFO     | errors: (none)
[2026-05-28 16:38:03] 2026-05-28 14:37:21,245 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-28 16:38:03] 2026-05-28 14:37:21,245 | INFO     | pilot state: finished 
[2026-05-28 16:38:03] 2026-05-28 14:37:21,245 | INFO     | transexitcode: 0
[2026-05-28 16:38:03] 2026-05-28 14:37:21,245 | INFO     | exeerrorcode: 0
[2026-05-28 16:38:03] 2026-05-28 14:37:21,245 | INFO     | exeerrordiag: 
[2026-05-28 16:38:03] 2026-05-28 14:37:21,245 | INFO     | exitcode: 0
[2026-05-28 16:38:03] 2026-05-28 14:37:21,245 | INFO     | exitmsg: OK
[2026-05-28 16:38:03] 2026-05-28 14:37:21,245 | INFO     | cpuconsumptiontime: 31338 s
[2026-05-28 16:38:03] 2026-05-28 14:37:21,245 | INFO     | nevents: 400
[2026-05-28 16:38:03] 2026-05-28 14:37:21,245 | INFO     | neventsw: 0
[2026-05-28 16:38:03] 2026-05-28 14:37:21,245 | INFO     | pid: 2775897
[2026-05-28 16:38:03] 2026-05-28 14:37:21,245 | INFO     | pgrp: 2775897
[2026-05-28 16:38:03] 2026-05-28 14:37:21,246 | INFO     | corecount: 4
[2026-05-28 16:38:03] 2026-05-28 14:37:21,246 | INFO     | event service: False
[2026-05-28 16:38:03] 2026-05-28 14:37:21,246 | INFO     | sizes: {0: 2265182, 1: 2267679, 12: 2267679, 8241: 2295833, 8243: 2304909, 8246: 2305047}
[2026-05-28 16:38:03] 2026-05-28 14:37:21,246 | INFO     | --------------------------------------------------
[2026-05-28 16:38:03] 2026-05-28 14:37:21,246 | INFO     | 
[2026-05-28 16:38:03] 2026-05-28 14:37:21,246 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot60/slots/2
[2026-05-28 16:38:03] 2026-05-28 14:37:21,276 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,277 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,277 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,277 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,277 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,277 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,277 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,277 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,277 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,277 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,278 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,278 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,278 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,278 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,278 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,278 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,278 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,278 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-28 16:38:03] 2026-05-28 14:37:21,278 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,278 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-28 16:38:03] 2026-05-28 14:37:21,279 | INFO     | job 7155879047 has completed (purged errors)
[2026-05-28 16:38:03] 2026-05-28 14:37:21,279 | INFO     | overall cleanup function is called
[2026-05-28 16:38:03] 2026-05-28 14:37:21,999 | WARNING  | process 2775897 can no longer be monitored (due to stat problems) - aborting
[2026-05-28 16:38:03] 2026-05-28 14:37:22,291 | INFO     | --- collectZombieJob: --- 10, [2775897]
[2026-05-28 16:38:03] 2026-05-28 14:37:22,291 | INFO     | zombie collector waiting for pid 2775897
[2026-05-28 16:38:03] 2026-05-28 14:37:22,291 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-28 16:38:03] 2026-05-28 14:37:22,291 | INFO     | collected zombie processes
[2026-05-28 16:38:03] 2026-05-28 14:37:22,291 | INFO     | will attempt to kill all subprocesses of pid=2775897
[2026-05-28 16:38:03] 2026-05-28 14:37:23,067 | INFO     | using path: /var/lib/boinc/var/slot60/slots/2/memory_monitor_summary.json (trf name=prmon)
[2026-05-28 16:38:03] 2026-05-28 14:37:24,151 | INFO     | process IDs to be killed: [2775897] (in reverse order)
[2026-05-28 16:38:03] 2026-05-28 14:37:24,372 | INFO     | number of running child processes to parent process 2775897: 1
[2026-05-28 16:38:03] 2026-05-28 14:37:24,373 | INFO     | maximum number of monitored processes: 6
[2026-05-28 16:38:03] 2026-05-28 14:37:24,373 | INFO     | aborting job monitoring since job object (job id=7155879047) has expired
[2026-05-28 16:38:03] 2026-05-28 14:37:24,469 | WARNING  | found no corresponding commands to process id(s)
[2026-05-28 16:38:03] 2026-05-28 14:37:24,469 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-28 16:38:03] 2026-05-28 14:37:24,508 | INFO     | did not find any defunct processes belonging to 2775897
[2026-05-28 16:38:03] 2026-05-28 14:37:24,535 | INFO     | did not find any defunct processes belonging to 2775897
[2026-05-28 16:38:03] 2026-05-28 14:37:24,535 | INFO     | Ready for new job
[2026-05-28 16:38:03] 2026-05-28 14:37:24,537 | INFO     | ***************************************
[2026-05-28 16:38:03] 2026-05-28 14:37:24,537 | INFO     | ***  PanDA Pilot version 3.13.1.30  ***
[2026-05-28 16:38:03] 2026-05-28 14:37:24,538 | INFO     | ***************************************
[2026-05-28 16:38:03] 2026-05-28 14:37:24,538 | INFO     | 
[2026-05-28 16:38:03] 2026-05-28 14:37:24,546 | INFO     | architecture information:
[2026-05-28 16:38:03] 2026-05-28 14:37:24,546 | INFO     | executing command: cat /etc/os-release
[2026-05-28 16:38:03] 2026-05-28 14:37:24,569 | INFO     | cat /etc/os-release:
[2026-05-28 16:38:03] NAME="CentOS Linux"
[2026-05-28 16:38:03] VERSION="7 (Core)"
[2026-05-28 16:38:03] ID="centos"
[2026-05-28 16:38:03] ID_LIKE="rhel fedora"
[2026-05-28 16:38:03] VERSION_ID="7"
[2026-05-28 16:38:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-28 16:38:03] ANSI_COLOR="0;31"
[2026-05-28 16:38:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-28 16:38:03] HOME_URL="https://www.centos.org/"
[2026-05-28 16:38:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-28 16:38:03] 
[2026-05-28 16:38:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-28 16:38:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-28 16:38:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-28 16:38:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-28 16:38:03] 
[2026-05-28 16:38:03] 2026-05-28 14:37:24,569 | INFO     | ***************************************
[2026-05-28 16:38:03] 2026-05-28 14:37:25,072 | INFO     | executing command: df -mP /var/lib/boinc/var/slot60/slots/2
[2026-05-28 16:38:03] 2026-05-28 14:37:25,095 | INFO     | sufficient remaining disk space (310024077312 B)
[2026-05-28 16:38:03] 2026-05-28 14:37:25,096 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-28 16:38:03] 2026-05-28 14:37:25,096 | INFO     | current server update state: UPDATING_FINAL
[2026-05-28 16:38:03] 2026-05-28 14:37:25,096 | INFO     | update_server=False
[2026-05-28 16:38:03] 2026-05-28 14:37:25,096 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-28 16:38:03] 2026-05-28 14:37:25,096 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-28 16:38:03] 2026-05-28 14:37:25,097 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-28 16:38:03] 2026-05-28 14:37:25,097 | INFO     | will abort loop
[2026-05-28 16:38:03] 2026-05-28 14:37:25,141 | INFO     | all data control threads have been joined
[2026-05-28 16:38:03] 2026-05-28 14:37:25,845 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-28 16:38:03] 2026-05-28 14:37:25,874 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-28 16:38:03] 2026-05-28 14:37:26,102 | INFO     | [job] retrieve thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:26,102 | INFO     | [job] job monitor thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:26,147 | INFO     | [data] control thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:26,185 | INFO     | [data] copytool_in thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:26,342 | INFO     | [payload] validate_post thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:26,474 | INFO     | all job control threads have been joined
[2026-05-28 16:38:03] 2026-05-28 14:37:26,513 | INFO     | all payload control threads have been joined
[2026-05-28 16:38:03] 2026-05-28 14:37:26,853 | INFO     | [job] queue monitor thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:26,890 | INFO     | [job] validate thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:27,029 | INFO     | [payload] failed_post thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:27,128 | INFO     | [payload] execute_payloads thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:27,225 | INFO     | [job] create_data_payload thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:27,413 | INFO     | [payload] validate_pre thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:27,479 | INFO     | [job] control thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:27,518 | INFO     | [payload] control thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:27,880 | INFO     | [data] copytool_out thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:29,103 | INFO     | [data] queue_monitor thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:35,340 | INFO     | job.realtimelogging is not enabled
[2026-05-28 16:38:03] 2026-05-28 14:37:36,345 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-28 16:38:03] 2026-05-28 14:37:55,209 | INFO     | PID=2769980 has CPU usage=13.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-05-28 16:38:03] 2026-05-28 14:37:55,209 | INFO     | .. there are 20 such processes running
[2026-05-28 16:38:03] 2026-05-28 14:37:55,209 | INFO     | found 0 job(s) in 20 queues
[2026-05-28 16:38:03] 2026-05-28 14:37:55,209 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-28 16:38:03] 2026-05-28 14:37:55,209 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-28 16:38:03] 2026-05-28 14:37:56,266 | INFO     | [monitor] cgroup control has ended
[2026-05-28 16:38:03] 2026-05-28 14:37:58,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22888048932672)>', '<ExcThread(monitor, started 22887742297856)>']
[2026-05-28 16:38:03] 2026-05-28 14:37:58,225 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-28 16:38:03] 2026-05-28 14:37:58,225 | INFO     | [monitor] control thread has ended
[2026-05-28 16:38:03] 2026-05-28 14:38:03,220 | INFO     | all workflow threads have been joined
[2026-05-28 16:38:03] 2026-05-28 14:38:03,221 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-28 16:38:03] 2026-05-28 14:38:03,221 | INFO     | traces error code: 0
[2026-05-28 16:38:03] 2026-05-28 14:38:03,221 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-28 16:38:03] 2026-05-28 14:38:03,362 [wrapper] ==== pilot stdout END ====
[2026-05-28 16:38:03] 2026-05-28 14:38:03,367 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-28 16:38:03] 2026-05-28 14:38:03,371 [wrapper] pilotpid: 2769980
[2026-05-28 16:38:03] 2026-05-28 14:38:03,375 [wrapper] Pilot exit status: 0
[2026-05-28 16:38:03] 2026-05-28 14:38:03,391 [wrapper] pandaids: 7155879047
[2026-05-28 16:38:03] 2026-05-28 14:38:03,578 [wrapper] cleanup supervisor_pilot 3155836 2769981
[2026-05-28 16:38:03] 2026-05-28 14:38:03,582 [wrapper] Test setup, not cleaning
[2026-05-28 16:38:03] 2026-05-28 14:38:03,585 [wrapper] apfmon messages muted
[2026-05-28 16:38:03] 2026-05-28 14:38:03,587 [wrapper] ==== wrapper stdout END ====
[2026-05-28 16:38:03] 2026-05-28 14:38:03,589 [wrapper] ==== wrapper stderr END ====
[2026-05-28 16:38:03]  *** Error codes and diagnostics ***
[2026-05-28 16:38:03]     "exeErrorCode": 0,
[2026-05-28 16:38:03]     "pilotErrorCode": 0,
[2026-05-28 16:38:03]  *** Listing of results directory ***
[2026-05-28 16:38:03] total 436408
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc    709501 May 28 08:03 pilot3.tar.gz
[2026-05-28 16:38:03] -rwx------. 1 boinc boinc     36281 May 28 08:07 runpilot2-wrapper.sh
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc      5631 May 28 08:08 queuedata.json
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc       100 May 28 14:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-28 16:38:03] -rwxr-xr-x. 1 boinc boinc      7986 May 28 14:19 run_atlas
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc       105 May 28 14:19 job.xml
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc      6540 May 28 14:19 init_data.xml
[2026-05-28 16:38:03] -rw-r--r--. 2 boinc boinc 266564094 May 28 14:19 EVNT.49539563._000335.pool.root.1
[2026-05-28 16:38:03] -rw-r--r--. 2 boinc boinc     15667 May 28 14:19 start_atlas.sh
[2026-05-28 16:38:03] drwxrwx--x. 2 boinc boinc      4096 May 28 14:19 shared
[2026-05-28 16:38:03] -rw-r--r--. 2 boinc boinc    722750 May 28 14:19 input.tar.gz
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc         0 May 28 14:19 boinc_lockfile
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc      2569 May 28 14:19 pandaJob.out
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc    996137 May 28 14:19 agis_schedconf.cvmfs.json
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc         0 May 28 14:19 agis_ddmendpoints.agis.ALL.json
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc   1251485 May 28 14:19 cric_ddmendpoints.json
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc       443 May 28 14:19 workernode_map.json
[2026-05-28 16:38:03] drwx------. 5 boinc boinc      4096 May 28 14:19 pilot3
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc 174269447 May 28 16:36 HITS.49545102._010821.pool.root.1
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc       487 May 28 16:36 boinc_task_state.xml
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc        95 May 28 16:37 pilot_heartbeat.json
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc      1038 May 28 16:37 memory_monitor_summary.json
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc    272392 May 28 16:37 log.49545102._010821.job.log.tgz.1
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc      6411 May 28 16:37 heartbeat_new.json
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc      6302 May 28 16:37 heartbeat.json
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc        27 May 28 16:37 wrapper_checkpoint.txt
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc      8192 May 28 16:37 boinc_mmap_file
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc      4908 May 28 16:38 pilotlog.txt
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc    784926 May 28 16:38 log.49545102._010821.job.log.1
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc       357 May 28 16:38 output.list
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc       410 May 28 16:38 runtime_log
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc   1075200 May 28 16:38 result.tar.gz
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc      8827 May 28 16:38 runtime_log.err
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc       662 May 28 16:38 dbac841b6f41.diag
[2026-05-28 16:38:03] -rw-r--r--. 1 boinc boinc     21014 May 28 16:38 stderr.txt
[2026-05-28 16:38:03] HITS file was successfully produced:
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc 174269447 May 28 16:36 shared/HITS.pool.root.1
[2026-05-28 16:38:03]  *** Contents of shared directory: ***
[2026-05-28 16:38:03] total 432292
[2026-05-28 16:38:03] -rw-r--r--. 2 boinc boinc 266564094 May 28 14:19 ATLAS.root_0
[2026-05-28 16:38:03] -rw-r--r--. 2 boinc boinc     15667 May 28 14:19 start_atlas.sh
[2026-05-28 16:38:03] -rw-r--r--. 2 boinc boinc    722750 May 28 14:19 input.tar.gz
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc 174269447 May 28 16:36 HITS.pool.root.1
[2026-05-28 16:38:03] -rw-------. 1 boinc boinc   1075200 May 28 16:38 result.tar.gz
16:38:05 (2761094): run_atlas exited; CPU time 31754.805767
16:38:05 (2761094): called boinc_finish(0)

</stderr_txt>
]]>

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