Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:02:33 (2595917): wrapper (7.7.26015): starting
08:02:33 (2595917): wrapper: running run_atlas (--nthreads 4)
[2026-05-28 08:02:33] Arguments: --nthreads 4
[2026-05-28 08:02:33] Threads: 4
[2026-05-28 08:02:33] Checking for CVMFS
[2026-05-28 08:02:33] No cvmfs_config command found, will try listing directly
[2026-05-28 08:02:33] CVMFS is ok
[2026-05-28 08:02:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-28 08:02:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-28 08:02:33] Further information can be found at the LHC@home message board.
[2026-05-28 08:02:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-28 08:02:33] Checking for apptainer binary...
[2026-05-28 08:02:33] which: no apptainer in ((null))
[2026-05-28 08:02:33] apptainer is not installed, using version from CVMFS
[2026-05-28 08:02:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-28 08:02:34] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot32/slots/40/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2026-05-28 08:02:34] apptainer works
[2026-05-28 08:02:34] Set ATHENA_PROC_NUMBER=4
[2026-05-28 08:02:34] Set ATHENA_CORE_NUMBER=4
[2026-05-28 08:02:34] Starting ATLAS job with PandaID=7155302394
[2026-05-28 08:02:34] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot32/slots/40 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-28 10:08:13]  *** The last 200 lines of the pilot log: ***
[2026-05-28 10:08:13] 2026-05-28 08:07:32,049 | INFO     | maximum number of monitored processes: 6
[2026-05-28 10:08:13] 2026-05-28 08:07:33,200 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-28 10:08:13] 2026-05-28 08:07:33,288 | INFO     | job 7155302394 has state=finished
[2026-05-28 10:08:13] 2026-05-28 08:07:33,289 | INFO     | preparing for final server update for job 7155302394 in state='finished'
[2026-05-28 10:08:13] 2026-05-28 08:07:33,289 | INFO     | reading metadata from: /var/lib/boinc/var/slot32/slots/40/PanDA_Pilot-7155302394/jobReport.json
[2026-05-28 10:08:13] 2026-05-28 08:07:33,292 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot32/slots/40/workernode_map.json
[2026-05-28 10:08:13] 2026-05-28 08:07:33,292 | INFO     | this job has now completed (state=finished)
[2026-05-28 10:08:13] 2026-05-28 08:07:33,293 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-28 10:08:13] 2026-05-28 08:07:33,293 | INFO     | log transfer has been attempted: DONE
[2026-05-28 10:08:13] 2026-05-28 08:07:33,293 | INFO     | job 7155302394 has finished - writing final server update
[2026-05-28 10:08:13] 2026-05-28 08:07:33,293 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1340657/.job.ad'
[2026-05-28 10:08:13] 2026-05-28 08:07:33,294 | INFO     | total number of processed events: 400 (read)
[2026-05-28 10:08:13] 2026-05-28 08:07:33,317 | INFO     | using path: /var/lib/boinc/var/slot32/slots/40/PanDA_Pilot-7155302394/memory_monitor_summary.json (trf name=prmon)
[2026-05-28 10:08:13] 2026-05-28 08:07:33,318 | INFO     | extracted standard info from prmon json
[2026-05-28 10:08:13] 2026-05-28 08:07:33,318 | INFO     | extracted standard memory fields from prmon json
[2026-05-28 10:08:13] 2026-05-28 08:07:33,318 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-28 10:08:13] 2026-05-28 08:07:33,319 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-28 10:08:13] 2026-05-28 08:07:33,321 | INFO     | fitting pss+swap vs Time
[2026-05-28 10:08:13] 2026-05-28 08:07:33,321 | INFO     | sum of square deviations: 563026370.5
[2026-05-28 10:08:13] 2026-05-28 08:07:33,322 | INFO     | sum of deviations: 14381094558.5
[2026-05-28 10:08:13] 2026-05-28 08:07:33,322 | INFO     | mean x (centered): 0.0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,322 | INFO     | mean y: 2313628.87704918
[2026-05-28 10:08:13] 2026-05-28 08:07:33,322 | INFO     | intersect: 2313628.87704918
[2026-05-28 10:08:13] 2026-05-28 08:07:33,323 | INFO     | chi2: 1.3454853735679344
[2026-05-28 10:08:13] 2026-05-28 08:07:33,323 | INFO     | sum of square deviations: 496597218.0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,323 | INFO     | sum of deviations: 13714799030.999998
[2026-05-28 10:08:13] 2026-05-28 08:07:33,324 | INFO     | mean x (centered): 0.0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,324 | INFO     | mean y: 2312098.7094017095
[2026-05-28 10:08:13] 2026-05-28 08:07:33,324 | INFO     | intersect: 2312098.7094017095
[2026-05-28 10:08:13] 2026-05-28 08:07:33,324 | INFO     | chi2: 1.3474556443370682
[2026-05-28 10:08:13] 2026-05-28 08:07:33,324 | INFO     | current chi2=1.3474556443370682 (change=-0.14643568840210275 %)
[2026-05-28 10:08:13] 2026-05-28 08:07:33,324 | INFO     | right removable region: 116
[2026-05-28 10:08:13] 2026-05-28 08:07:33,324 | INFO     | sum of square deviations: 496597218.0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,325 | INFO     | sum of deviations: -961016204.0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,325 | INFO     | mean x (centered): 0.0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,325 | INFO     | mean y: 2348088.2393162395
[2026-05-28 10:08:13] 2026-05-28 08:07:33,325 | INFO     | intersect: 2348088.2393162395
[2026-05-28 10:08:13] 2026-05-28 08:07:33,326 | INFO     | chi2: 0.0020238401765795173
[2026-05-28 10:08:13] 2026-05-28 08:07:33,326 | INFO     | current chi2=0.0020238401765795173 (change=99.84958289281045 %)
[2026-05-28 10:08:13] 2026-05-28 08:07:33,326 | INFO     | sum of square deviations: 435610028.0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,326 | INFO     | sum of deviations: -934901768.5000002
[2026-05-28 10:08:13] 2026-05-28 08:07:33,327 | INFO     | mean x (centered): 0.0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,327 | INFO     | mean y: 2348014.651785714
[2026-05-28 10:08:13] 2026-05-28 08:07:33,327 | INFO     | intersect: 2348014.651785714
[2026-05-28 10:08:13] 2026-05-28 08:07:33,327 | INFO     | chi2: 0.0019390690723042805
[2026-05-28 10:08:13] 2026-05-28 08:07:33,327 | INFO     | current chi2=0.0019390690723042805 (change=4.1886264170577 %)
[2026-05-28 10:08:13] 2026-05-28 08:07:33,327 | INFO     | left removable region: 10
[2026-05-28 10:08:13] 2026-05-28 08:07:33,327 | INFO     | sum of square deviations: 369281342.5
[2026-05-28 10:08:13] 2026-05-28 08:07:33,328 | INFO     | sum of deviations: -962925351.5
[2026-05-28 10:08:13] 2026-05-28 08:07:33,328 | INFO     | mean x (centered): 0.0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,328 | INFO     | mean y: 2347937.7641509436
[2026-05-28 10:08:13] 2026-05-28 08:07:33,328 | INFO     | intersect: 2347937.7641509436
[2026-05-28 10:08:13] 2026-05-28 08:07:33,328 | INFO     | chi2: 0.0018456151209247044
[2026-05-28 10:08:13] 2026-05-28 08:07:33,328 | INFO     | current memory leak: -2.61 B/s (using 106 data points, chi2=0.00)
[2026-05-28 10:08:13] 2026-05-28 08:07:33,329 | INFO     | could have reported an average CPU frequency of 2730 MHz (8 samples)
[2026-05-28 10:08:13] 2026-05-28 08:07:33,329 | INFO     | ..............................
[2026-05-28 10:08:13] 2026-05-28 08:07:33,329 | INFO     | . Timing measurements:
[2026-05-28 10:08:13] 2026-05-28 08:07:33,329 | INFO     | . get job = 0 s
[2026-05-28 10:08:13] 2026-05-28 08:07:33,330 | INFO     | . initial setup = 7 s
[2026-05-28 10:08:13] 2026-05-28 08:07:33,330 | INFO     | . payload setup = 13 s
[2026-05-28 10:08:13] 2026-05-28 08:07:33,330 | INFO     | . stage-in = 0 s
[2026-05-28 10:08:13] 2026-05-28 08:07:33,330 | INFO     | . payload execution = 7445 s
[2026-05-28 10:08:13] 2026-05-28 08:07:33,330 | INFO     | . stage-out = 1 s
[2026-05-28 10:08:13] 2026-05-28 08:07:33,330 | INFO     | . log creation = 0 s
[2026-05-28 10:08:13] 2026-05-28 08:07:33,330 | INFO     | ..............................
[2026-05-28 10:08:13] 2026-05-28 08:07:33,421 | INFO     | 
[2026-05-28 10:08:13] 2026-05-28 08:07:33,422 | INFO     | job summary report
[2026-05-28 10:08:13] 2026-05-28 08:07:33,422 | INFO     | --------------------------------------------------
[2026-05-28 10:08:13] 2026-05-28 08:07:33,422 | INFO     | PanDA job id: 7155302394
[2026-05-28 10:08:13] 2026-05-28 08:07:33,422 | INFO     | task id: 49545102
[2026-05-28 10:08:13] 2026-05-28 08:07:33,422 | INFO     | errors: (none)
[2026-05-28 10:08:13] 2026-05-28 08:07:33,422 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-28 10:08:13] 2026-05-28 08:07:33,422 | INFO     | pilot state: finished 
[2026-05-28 10:08:13] 2026-05-28 08:07:33,422 | INFO     | transexitcode: 0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,422 | INFO     | exeerrorcode: 0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,423 | INFO     | exeerrordiag: 
[2026-05-28 10:08:13] 2026-05-28 08:07:33,423 | INFO     | exitcode: 0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,423 | INFO     | exitmsg: OK
[2026-05-28 10:08:13] 2026-05-28 08:07:33,423 | INFO     | cpuconsumptiontime: 28418 s
[2026-05-28 10:08:13] 2026-05-28 08:07:33,423 | INFO     | nevents: 400
[2026-05-28 10:08:13] 2026-05-28 08:07:33,423 | INFO     | neventsw: 0
[2026-05-28 10:08:13] 2026-05-28 08:07:33,423 | INFO     | pid: 2605235
[2026-05-28 10:08:13] 2026-05-28 08:07:33,423 | INFO     | pgrp: 2605235
[2026-05-28 10:08:13] 2026-05-28 08:07:33,423 | INFO     | corecount: 4
[2026-05-28 10:08:13] 2026-05-28 08:07:33,423 | INFO     | event service: False
[2026-05-28 10:08:13] 2026-05-28 08:07:33,423 | INFO     | sizes: {0: 2266018, 1: 2267648, 11: 2267676, 7463: 2295338, 7464: 2295337, 7465: 2304415, 7467: 2304793}
[2026-05-28 10:08:13] 2026-05-28 08:07:33,423 | INFO     | --------------------------------------------------
[2026-05-28 10:08:13] 2026-05-28 08:07:33,424 | INFO     | 
[2026-05-28 10:08:13] 2026-05-28 08:07:33,424 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot32/slots/40
[2026-05-28 10:08:13] 2026-05-28 08:07:33,456 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,457 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,457 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,457 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,457 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,457 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,457 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,457 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,458 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,458 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,458 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,458 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,458 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,458 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,458 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,458 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,458 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,458 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-28 10:08:13] 2026-05-28 08:07:33,458 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,459 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-28 10:08:13] 2026-05-28 08:07:33,459 | INFO     | job 7155302394 has completed (purged errors)
[2026-05-28 10:08:13] 2026-05-28 08:07:33,459 | INFO     | overall cleanup function is called
[2026-05-28 10:08:13] 2026-05-28 08:07:34,469 | INFO     | --- collectZombieJob: --- 10, [2605235]
[2026-05-28 10:08:13] 2026-05-28 08:07:34,469 | INFO     | zombie collector waiting for pid 2605235
[2026-05-28 10:08:13] 2026-05-28 08:07:34,469 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-28 10:08:13] 2026-05-28 08:07:34,469 | INFO     | collected zombie processes
[2026-05-28 10:08:13] 2026-05-28 08:07:34,469 | INFO     | will attempt to kill all subprocesses of pid=2605235
[2026-05-28 10:08:13] 2026-05-28 08:07:35,094 | INFO     | process IDs to be killed: [2605235] (in reverse order)
[2026-05-28 10:08:13] 2026-05-28 08:07:35,362 | WARNING  | found no corresponding commands to process id(s)
[2026-05-28 10:08:13] 2026-05-28 08:07:35,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-28 10:08:13] 2026-05-28 08:07:35,390 | INFO     | did not find any defunct processes belonging to 2605235
[2026-05-28 10:08:13] 2026-05-28 08:07:35,416 | INFO     | did not find any defunct processes belonging to 2605235
[2026-05-28 10:08:13] 2026-05-28 08:07:35,417 | INFO     | Ready for new job
[2026-05-28 10:08:13] 2026-05-28 08:07:35,418 | INFO     | ***************************************
[2026-05-28 10:08:13] 2026-05-28 08:07:35,419 | INFO     | ***  PanDA Pilot version 3.13.1.30  ***
[2026-05-28 10:08:13] 2026-05-28 08:07:35,419 | INFO     | ***************************************
[2026-05-28 10:08:13] 2026-05-28 08:07:35,419 | INFO     | 
[2026-05-28 10:08:13] 2026-05-28 08:07:35,427 | INFO     | architecture information:
[2026-05-28 10:08:13] 2026-05-28 08:07:35,427 | INFO     | executing command: cat /etc/os-release
[2026-05-28 10:08:13] 2026-05-28 08:07:35,452 | INFO     | cat /etc/os-release:
[2026-05-28 10:08:13] NAME="CentOS Linux"
[2026-05-28 10:08:13] VERSION="7 (Core)"
[2026-05-28 10:08:13] ID="centos"
[2026-05-28 10:08:13] ID_LIKE="rhel fedora"
[2026-05-28 10:08:13] VERSION_ID="7"
[2026-05-28 10:08:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-28 10:08:13] ANSI_COLOR="0;31"
[2026-05-28 10:08:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-28 10:08:13] HOME_URL="https://www.centos.org/"
[2026-05-28 10:08:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-28 10:08:13] 
[2026-05-28 10:08:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-28 10:08:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-28 10:08:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-28 10:08:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-28 10:08:13] 
[2026-05-28 10:08:13] 2026-05-28 08:07:35,453 | INFO     | ***************************************
[2026-05-28 10:08:13] 2026-05-28 08:07:35,956 | INFO     | executing command: df -mP /var/lib/boinc/var/slot32/slots/40
[2026-05-28 10:08:13] 2026-05-28 08:07:35,984 | INFO     | sufficient remaining disk space (320663977984 B)
[2026-05-28 10:08:13] 2026-05-28 08:07:35,984 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-28 10:08:13] 2026-05-28 08:07:35,984 | INFO     | current server update state: UPDATING_FINAL
[2026-05-28 10:08:13] 2026-05-28 08:07:35,984 | INFO     | update_server=False
[2026-05-28 10:08:13] 2026-05-28 08:07:35,984 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-28 10:08:13] 2026-05-28 08:07:35,985 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-28 10:08:13] 2026-05-28 08:07:35,985 | INFO     | aborting loop
[2026-05-28 10:08:13] 2026-05-28 08:07:36,139 | INFO     | all job control threads have been joined
[2026-05-28 10:08:13] 2026-05-28 08:07:36,209 | INFO     | all payload control threads have been joined
[2026-05-28 10:08:13] 2026-05-28 08:07:36,843 | INFO     | all data control threads have been joined
[2026-05-28 10:08:13] 2026-05-28 08:07:36,962 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-28 10:08:13] 2026-05-28 08:07:36,985 | INFO     | [job] retrieve thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:36,990 | INFO     | [job] job monitor thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:37,122 | INFO     | [job] create_data_payload thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:37,143 | INFO     | [job] control thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:37,206 | INFO     | [payload] validate_pre thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:37,215 | INFO     | [payload] control thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:37,346 | INFO     | [payload] validate_post thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:37,568 | INFO     | [data] copytool_in thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:37,809 | INFO     | [payload] execute_payloads thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:37,849 | INFO     | [data] control thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:38,133 | INFO     | [job] validate thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:38,378 | INFO     | [payload] failed_post thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:38,433 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-28 10:08:13] 2026-05-28 08:07:38,968 | INFO     | [data] copytool_out thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:39,294 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-28 10:08:13] 2026-05-28 08:07:39,438 | INFO     | [job] queue monitor thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:43,300 | INFO     | [data] queue_monitor thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:07:46,866 | INFO     | job.realtimelogging is not enabled
[2026-05-28 10:08:13] 2026-05-28 08:07:47,871 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-28 10:08:13] 2026-05-28 08:08:05,902 | INFO     | [monitor] cgroup control has ended
[2026-05-28 10:08:13] 2026-05-28 08:08:06,993 | INFO     | PID=2599964 has CPU usage=10.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-05-28 10:08:13] 2026-05-28 08:08:06,993 | INFO     | .. there are 15 such processes running
[2026-05-28 10:08:13] 2026-05-28 08:08:06,993 | INFO     | found 0 job(s) in 20 queues
[2026-05-28 10:08:13] 2026-05-28 08:08:06,993 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-28 10:08:13] 2026-05-28 08:08:06,994 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-28 10:08:13] 2026-05-28 08:08:07,583 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22523841554240)>', '<ExcThread(monitor, started 22523536189184)>']
[2026-05-28 10:08:13] 2026-05-28 08:08:07,999 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-28 10:08:13] 2026-05-28 08:08:07,999 | INFO     | [monitor] control thread has ended
[2026-05-28 10:08:13] 2026-05-28 08:08:12,608 | INFO     | all workflow threads have been joined
[2026-05-28 10:08:13] 2026-05-28 08:08:12,609 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-28 10:08:13] 2026-05-28 08:08:12,609 | INFO     | traces error code: 0
[2026-05-28 10:08:13] 2026-05-28 08:08:12,609 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-28 10:08:13] 2026-05-28 08:08:12,794 [wrapper] ==== pilot stdout END ====
[2026-05-28 10:08:13] 2026-05-28 08:08:12,798 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-28 10:08:13] 2026-05-28 08:08:12,802 [wrapper] pilotpid: 2599964
[2026-05-28 10:08:13] 2026-05-28 08:08:12,805 [wrapper] Pilot exit status: 0
[2026-05-28 10:08:13] 2026-05-28 08:08:12,818 [wrapper] pandaids: 7155302394
[2026-05-28 10:08:13] 2026-05-28 08:08:12,990 [wrapper] cleanup supervisor_pilot 2916610 2599965
[2026-05-28 10:08:13] 2026-05-28 08:08:12,994 [wrapper] Test setup, not cleaning
[2026-05-28 10:08:13] 2026-05-28 08:08:12,997 [wrapper] apfmon messages muted
[2026-05-28 10:08:13] 2026-05-28 08:08:13,002 [wrapper] ==== wrapper stdout END ====
[2026-05-28 10:08:13] 2026-05-28 08:08:13,006 [wrapper] ==== wrapper stderr END ====
[2026-05-28 10:08:13]  *** Error codes and diagnostics ***
[2026-05-28 10:08:13]     "exeErrorCode": 0,
[2026-05-28 10:08:13]     "pilotErrorCode": 0,
[2026-05-28 10:08:13]  *** Listing of results directory ***
[2026-05-28 10:08:13] total 438792
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc      5631 May 28 05:02 queuedata.json
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc    709501 May 28 05:02 pilot3.tar.gz
[2026-05-28 10:08:13] -rwx------. 1 boinc boinc     36281 May 28 05:05 runpilot2-wrapper.sh
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc       100 May 28 08:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-28 10:08:13] -rwxr-xr-x. 1 boinc boinc      7986 May 28 08:02 run_atlas
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc       105 May 28 08:02 job.xml
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc      6539 May 28 08:02 init_data.xml
[2026-05-28 10:08:13] -rw-r--r--. 2 boinc boinc 271398903 May 28 08:02 EVNT.49539563._000105.pool.root.1
[2026-05-28 10:08:13] -rw-r--r--. 2 boinc boinc     15667 May 28 08:02 start_atlas.sh
[2026-05-28 10:08:13] drwxrwx--x. 2 boinc boinc      4096 May 28 08:02 shared
[2026-05-28 10:08:13] -rw-r--r--. 2 boinc boinc    722745 May 28 08:02 input.tar.gz
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc         0 May 28 08:02 boinc_lockfile
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc      2567 May 28 08:02 pandaJob.out
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc    996439 May 28 08:02 agis_schedconf.cvmfs.json
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc         0 May 28 08:02 agis_ddmendpoints.agis.ALL.json
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc   1251485 May 28 08:02 cric_ddmendpoints.json
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc       442 May 28 08:02 workernode_map.json
[2026-05-28 10:08:13] drwx------. 5 boinc boinc      4096 May 28 08:02 pilot3
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc 172039780 May 28 10:06 HITS.49545102._004351.pool.root.1
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc        95 May 28 10:07 pilot_heartbeat.json
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc       487 May 28 10:07 boinc_task_state.xml
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc      1024 May 28 10:07 memory_monitor_summary.json
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc    270278 May 28 10:07 log.49545102._004351.job.log.tgz.1
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc      6410 May 28 10:07 heartbeat_new.json
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc      6301 May 28 10:07 heartbeat.json
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc      8192 May 28 10:07 boinc_mmap_file
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc        27 May 28 10:07 wrapper_checkpoint.txt
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc      4907 May 28 10:08 pilotlog.txt
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc    710534 May 28 10:08 log.49545102._004351.job.log.1
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc       357 May 28 10:08 output.list
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc       410 May 28 10:08 runtime_log
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc    993280 May 28 10:08 result.tar.gz
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc      8844 May 28 10:08 runtime_log.err
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc       662 May 28 10:08 b0ff1ce49d91.diag
[2026-05-28 10:08:13] -rw-r--r--. 1 boinc boinc     21038 May 28 10:08 stderr.txt
[2026-05-28 10:08:13] HITS file was successfully produced:
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc 172039780 May 28 10:06 shared/HITS.pool.root.1
[2026-05-28 10:08:13]  *** Contents of shared directory: ***
[2026-05-28 10:08:13] total 434752
[2026-05-28 10:08:13] -rw-r--r--. 2 boinc boinc 271398903 May 28 08:02 ATLAS.root_0
[2026-05-28 10:08:13] -rw-r--r--. 2 boinc boinc     15667 May 28 08:02 start_atlas.sh
[2026-05-28 10:08:13] -rw-r--r--. 2 boinc boinc    722745 May 28 08:02 input.tar.gz
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc 172039780 May 28 10:06 HITS.pool.root.1
[2026-05-28 10:08:13] -rw-------. 1 boinc boinc    993280 May 28 10:08 result.tar.gz
10:08:14 (2595917): run_atlas exited; CPU time 28791.757526
10:08:14 (2595917): called boinc_finish(0)

</stderr_txt>
]]>

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