Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:16:38 (821256): wrapper (7.7.26015): starting
23:16:38 (821256): wrapper: running run_atlas (--nthreads 9)
[2026-05-27 23:16:38] Arguments: --nthreads 9
[2026-05-27 23:16:38] Threads: 9
[2026-05-27 23:16:38] Checking for CVMFS
[2026-05-27 23:16:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-27 23:16:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-27 23:16:40] Running cvmfs_config stat atlas.cern.ch
[2026-05-27 23:16:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-27 23:16:41] 2.13.3.0 17228 39681 469744 159876 1 63 18526013 32935936 28141 16776704 0 1120939 97.659 5467126 33772 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-05-27 23:16:41] CVMFS is ok
[2026-05-27 23:16:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-27 23:16:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-27 23:16:41] Further information can be found at the LHC@home message board.
[2026-05-27 23:16:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-27 23:16:41] Checking for apptainer binary...
[2026-05-27 23:16:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-27 23:16:41] Running /usr/bin/apptainer --version
[2026-05-27 23:16:41] apptainer version 1.4.5-3.el9
[2026-05-27 23:16:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-27 23:16:41] c6-12-27-2.aglt2.org
[2026-05-27 23:16:41] apptainer works
[2026-05-27 23:16:41] Set ATHENA_PROC_NUMBER=9
[2026-05-27 23:16:41] Set ATHENA_CORE_NUMBER=9
[2026-05-27 23:17:02] Starting ATLAS job with PandaID=7154916753
[2026-05-27 23:17:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-28 04:40:12]  *** The last 200 lines of the pilot log: ***
[2026-05-28 04:40:12] 2026-05-28 08:39:07,713 | INFO     | chi2: 2.355947931567791
[2026-05-28 04:40:12] 2026-05-28 08:39:07,714 | INFO     | sum of square deviations: 9148883964.368965
[2026-05-28 04:40:12] 2026-05-28 08:39:07,720 | INFO     | sum of deviations: 60413412057.19417
[2026-05-28 04:40:12] 2026-05-28 08:39:07,720 | INFO     | mean x (centered): 0.0
[2026-05-28 04:40:12] 2026-05-28 08:39:07,721 | INFO     | mean y: 2550427.6245954693
[2026-05-28 04:40:12] 2026-05-28 08:39:07,721 | INFO     | intersect: 2550427.6245954693
[2026-05-28 04:40:12] 2026-05-28 08:39:07,721 | INFO     | chi2: 2.3569269830640427
[2026-05-28 04:40:12] 2026-05-28 08:39:07,721 | INFO     | current chi2=2.3569269830640427 (change=-0.04155658463980781 %)
[2026-05-28 04:40:12] 2026-05-28 08:39:07,721 | INFO     | right removable region: 308
[2026-05-28 04:40:12] 2026-05-28 08:39:07,722 | INFO     | sum of square deviations: 9148816986.142382
[2026-05-28 04:40:12] 2026-05-28 08:39:07,728 | INFO     | sum of deviations: -8571843161.310678
[2026-05-28 04:40:12] 2026-05-28 08:39:07,729 | INFO     | mean x (centered): 0.0
[2026-05-28 04:40:12] 2026-05-28 08:39:07,729 | INFO     | mean y: 2574602.2330097086
[2026-05-28 04:40:12] 2026-05-28 08:39:07,729 | INFO     | intersect: 2574602.2330097086
[2026-05-28 04:40:12] 2026-05-28 08:39:07,730 | INFO     | chi2: 0.23806136309863304
[2026-05-28 04:40:12] 2026-05-28 08:39:07,730 | INFO     | current chi2=0.23806136309863304 (change=89.89530456472302 %)
[2026-05-28 04:40:12] 2026-05-28 08:39:07,730 | INFO     | sum of square deviations: 8711807189.549381
[2026-05-28 04:40:12] 2026-05-28 08:39:07,737 | INFO     | sum of deviations: -29579550034.483566
[2026-05-28 04:40:12] 2026-05-28 08:39:07,737 | INFO     | mean x (centered): 0.0
[2026-05-28 04:40:12] 2026-05-28 08:39:07,737 | INFO     | mean y: 2581932.023026316
[2026-05-28 04:40:12] 2026-05-28 08:39:07,737 | INFO     | intersect: 2581932.023026316
[2026-05-28 04:40:12] 2026-05-28 08:39:07,738 | INFO     | chi2: 0.060169891131633915
[2026-05-28 04:40:12] 2026-05-28 08:39:07,738 | INFO     | current chi2=0.060169891131633915 (change=74.72504973152469 %)
[2026-05-28 04:40:12] 2026-05-28 08:39:07,739 | INFO     | sum of square deviations: 8288937192.90302
[2026-05-28 04:40:12] 2026-05-28 08:39:07,741 | INFO     | sum of deviations: -28096699214.478264
[2026-05-28 04:40:12] 2026-05-28 08:39:07,741 | INFO     | mean x (centered): 0.0
[2026-05-28 04:40:12] 2026-05-28 08:39:07,741 | INFO     | mean y: 2581389.9565217393
[2026-05-28 04:40:12] 2026-05-28 08:39:07,741 | INFO     | intersect: 2581389.9565217393
[2026-05-28 04:40:12] 2026-05-28 08:39:07,742 | INFO     | chi2: 0.05775264403310853
[2026-05-28 04:40:12] 2026-05-28 08:39:07,746 | INFO     | current chi2=0.05775264403310853 (change=4.017369905551541 %)
[2026-05-28 04:40:12] 2026-05-28 08:39:07,746 | INFO     | left removable region: 15
[2026-05-28 04:40:12] 2026-05-28 08:39:07,747 | INFO     | sum of square deviations: 7799920077.20135
[2026-05-28 04:40:12] 2026-05-28 08:39:07,749 | INFO     | sum of deviations: -28064467007.91812
[2026-05-28 04:40:12] 2026-05-28 08:39:07,749 | INFO     | mean x (centered): 0.0
[2026-05-28 04:40:12] 2026-05-28 08:39:07,749 | INFO     | mean y: 2581402.0170648466
[2026-05-28 04:40:12] 2026-05-28 08:39:07,750 | INFO     | intersect: 2581402.0170648466
[2026-05-28 04:40:12] 2026-05-28 08:39:07,755 | INFO     | chi2: 0.05687401531988192
[2026-05-28 04:40:12] 2026-05-28 08:39:07,756 | INFO     | current memory leak: -3.60 B/s (using 293 data points, chi2=0.06)
[2026-05-28 04:40:12] 2026-05-28 08:39:07,756 | INFO     | could have reported an average CPU frequency of 2656 MHz (14 samples)
[2026-05-28 04:40:12] 2026-05-28 08:39:07,784 | INFO     | ..............................
[2026-05-28 04:40:12] 2026-05-28 08:39:07,785 | INFO     | . Timing measurements:
[2026-05-28 04:40:12] 2026-05-28 08:39:07,785 | INFO     | . get job = 0 s
[2026-05-28 04:40:12] 2026-05-28 08:39:07,785 | INFO     | . initial setup = 32 s
[2026-05-28 04:40:12] 2026-05-28 08:39:07,785 | INFO     | . payload setup = 45 s
[2026-05-28 04:40:12] 2026-05-28 08:39:07,785 | INFO     | . stage-in = 0 s
[2026-05-28 04:40:12] 2026-05-28 08:39:07,785 | INFO     | . payload execution = 19178 s
[2026-05-28 04:40:12] 2026-05-28 08:39:07,785 | INFO     | . stage-out = 4 s
[2026-05-28 04:40:12] 2026-05-28 08:39:07,785 | INFO     | . log creation = 0 s
[2026-05-28 04:40:12] 2026-05-28 08:39:07,785 | INFO     | ..............................
[2026-05-28 04:40:12] 2026-05-28 08:39:08,077 | WARNING  | process 835409 can no longer be monitored (due to stat problems) - aborting
[2026-05-28 04:40:12] 2026-05-28 08:39:08,078 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7154916753/memory_monitor_summary.json (trf name=prmon)
[2026-05-28 04:40:12] 2026-05-28 08:39:08,082 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7154916753/memory_monitor_summary.json (trf name=prmon)
[2026-05-28 04:40:12] 2026-05-28 08:39:08,082 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-05-28 04:40:12] 2026-05-28 08:39:08,082 | WARNING  | maxPSS not found in memory monitor output
[2026-05-28 04:40:12] 2026-05-28 08:39:08,083 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3121788 B
[2026-05-28 04:40:12] 2026-05-28 08:39:08,083 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 15825 B
[2026-05-28 04:40:12] 2026-05-28 08:39:08,083 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-05-28 04:40:12] 2026-05-28 08:39:08,155 | INFO     | sufficient remaining disk space (91101331456 B)
[2026-05-28 04:40:12] 2026-05-28 08:39:08,156 | INFO     | work directory size check will use 5033164800 B as a max limit (20% grace limit added, divider=1)
[2026-05-28 04:40:12] 2026-05-28 08:39:08,166 | INFO     | size of work directory /tmp/boinchome/slots/1/PanDA_Pilot-7154916753: 3517342 B (within 5033164800 B limit)
[2026-05-28 04:40:12] 2026-05-28 08:39:08,166 | INFO     | pfn file=/tmp/boinchome/slots/1/PanDA_Pilot-7154916753/HITS.49545102._001344.pool.root.1 does not exist (skip from workdir size calculation)
[2026-05-28 04:40:12] 2026-05-28 08:39:08,167 | INFO     | total size of present files: 0 B (workdir size: 3517342 B)
[2026-05-28 04:40:12] 2026-05-28 08:39:08,167 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/1/PanDA_Pilot-7154916753/HITS.49545102._001344.pool.root.1 since it does not exist
[2026-05-28 04:40:12] 2026-05-28 08:39:08,531 | INFO     | 
[2026-05-28 04:40:12] 2026-05-28 08:39:08,531 | INFO     | job summary report
[2026-05-28 04:40:12] 2026-05-28 08:39:08,531 | INFO     | --------------------------------------------------
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | PanDA job id: 7154916753
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | task id: 49545102
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | errors: (none)
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | pilot state: finished 
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | transexitcode: 0
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | exeerrorcode: 0
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | exeerrordiag: 
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | exitcode: 0
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | exitmsg: OK
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | cpuconsumptiontime: 38002 s
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | nevents: 400
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | neventsw: 0
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | pid: 835409
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | pgrp: 835409
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | corecount: 9
[2026-05-28 04:40:12] 2026-05-28 08:39:08,532 | INFO     | event service: False
[2026-05-28 04:40:12] 2026-05-28 08:39:08,533 | INFO     | sizes: {0: 2265174, 1: 2265859, 2: 2265887, 3: 2267716, 19228: 2300237, 19230: 2300236, 19236: 2309418, 19237: 2309474, 19238: 2309668}
[2026-05-28 04:40:12] 2026-05-28 08:39:08,533 | INFO     | --------------------------------------------------
[2026-05-28 04:40:12] 2026-05-28 08:39:08,533 | INFO     | 
[2026-05-28 04:40:12] 2026-05-28 08:39:08,533 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-05-28 04:40:12] 2026-05-28 08:39:08,606 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,606 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,606 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,606 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,606 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,606 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,606 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,606 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,606 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,607 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,607 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,607 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,607 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,607 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,607 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,607 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,607 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,607 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-28 04:40:12] 2026-05-28 08:39:08,607 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,607 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-28 04:40:12] 2026-05-28 08:39:08,607 | INFO     | job 7154916753 has completed (purged errors)
[2026-05-28 04:40:12] 2026-05-28 08:39:08,608 | INFO     | overall cleanup function is called
[2026-05-28 04:40:12] 2026-05-28 08:39:09,525 | INFO     | number of running child processes to parent process 835409: 1
[2026-05-28 04:40:12] 2026-05-28 08:39:09,525 | INFO     | maximum number of monitored processes: 6
[2026-05-28 04:40:12] 2026-05-28 08:39:09,525 | INFO     | aborting job monitoring since job object (job id=7154916753) has expired
[2026-05-28 04:40:12] 2026-05-28 08:39:09,629 | INFO     | --- collectZombieJob: --- 10, [835409]
[2026-05-28 04:40:12] 2026-05-28 08:39:09,629 | INFO     | zombie collector waiting for pid 835409
[2026-05-28 04:40:12] 2026-05-28 08:39:09,629 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-28 04:40:12] 2026-05-28 08:39:09,630 | INFO     | collected zombie processes
[2026-05-28 04:40:12] 2026-05-28 08:39:09,630 | INFO     | will attempt to kill all subprocesses of pid=835409
[2026-05-28 04:40:12] 2026-05-28 08:39:11,672 | INFO     | process IDs to be killed: [835409] (in reverse order)
[2026-05-28 04:40:12] 2026-05-28 08:39:12,231 | WARNING  | found no corresponding commands to process id(s)
[2026-05-28 04:40:12] 2026-05-28 08:39:12,232 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-28 04:40:12] 2026-05-28 08:39:12,277 | INFO     | did not find any defunct processes belonging to 835409
[2026-05-28 04:40:12] 2026-05-28 08:39:12,315 | INFO     | did not find any defunct processes belonging to 835409
[2026-05-28 04:40:12] 2026-05-28 08:39:12,316 | INFO     | Ready for new job
[2026-05-28 04:40:12] 2026-05-28 08:39:12,322 | INFO     | ***************************************
[2026-05-28 04:40:12] 2026-05-28 08:39:12,322 | INFO     | ***  PanDA Pilot version 3.13.1.30  ***
[2026-05-28 04:40:12] 2026-05-28 08:39:12,322 | INFO     | ***************************************
[2026-05-28 04:40:12] 2026-05-28 08:39:12,322 | INFO     | 
[2026-05-28 04:40:12] 2026-05-28 08:39:12,331 | INFO     | architecture information:
[2026-05-28 04:40:12] 2026-05-28 08:39:12,335 | INFO     | executing command: cat /etc/os-release
[2026-05-28 04:40:12] 2026-05-28 08:39:12,467 | INFO     | cat /etc/os-release:
[2026-05-28 04:40:12] NAME="CentOS Linux"
[2026-05-28 04:40:12] VERSION="7 (Core)"
[2026-05-28 04:40:12] ID="centos"
[2026-05-28 04:40:12] ID_LIKE="rhel fedora"
[2026-05-28 04:40:12] VERSION_ID="7"
[2026-05-28 04:40:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-28 04:40:12] ANSI_COLOR="0;31"
[2026-05-28 04:40:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-28 04:40:12] HOME_URL="https://www.centos.org/"
[2026-05-28 04:40:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-28 04:40:12] 
[2026-05-28 04:40:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-28 04:40:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-28 04:40:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-28 04:40:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-28 04:40:12] 
[2026-05-28 04:40:12] 2026-05-28 08:39:12,468 | INFO     | ***************************************
[2026-05-28 04:40:12] 2026-05-28 08:39:12,971 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-05-28 04:40:12] 2026-05-28 08:39:13,105 | INFO     | sufficient remaining disk space (91106574336 B)
[2026-05-28 04:40:12] 2026-05-28 08:39:13,106 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-28 04:40:12] 2026-05-28 08:39:13,106 | INFO     | current server update state: UPDATING_FINAL
[2026-05-28 04:40:12] 2026-05-28 08:39:13,106 | INFO     | update_server=False
[2026-05-28 04:40:12] 2026-05-28 08:39:13,106 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-28 04:40:12] 2026-05-28 08:39:13,106 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-28 04:40:12] 2026-05-28 08:39:13,123 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-28 04:40:12] 2026-05-28 08:39:13,123 | INFO     | aborting loop
[2026-05-28 04:40:12] 2026-05-28 08:39:13,154 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-28 04:40:12] 2026-05-28 08:39:13,354 | INFO     | all job control threads have been joined
[2026-05-28 04:40:12] 2026-05-28 08:39:13,449 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-28 04:40:12] 2026-05-28 08:39:13,716 | INFO     | all data control threads have been joined
[2026-05-28 04:40:12] 2026-05-28 08:39:13,913 | INFO     | all payload control threads have been joined
[2026-05-28 04:40:12] 2026-05-28 08:39:14,112 | INFO     | [job] retrieve thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:14,126 | INFO     | [payload] execute_payloads thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:14,126 | INFO     | [data] copytool_in thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:14,127 | INFO     | [payload] validate_pre thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:14,127 | INFO     | [job] create_data_payload thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:14,128 | INFO     | [job] job monitor thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:14,168 | INFO     | [job] queue monitor thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:14,367 | INFO     | [job] control thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:14,608 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:14,722 | INFO     | [data] control thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:14,755 | INFO     | [payload] failed_post thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:14,824 | INFO     | [payload] validate_post thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:14,918 | INFO     | [payload] control thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:15,092 | INFO     | [job] validate thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:15,113 | INFO     | [data] copytool_out thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:17,470 | INFO     | [data] queue_monitor thread has finished
[2026-05-28 04:40:12] 2026-05-28 08:39:43,496 | INFO     | PID=826199 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-28 04:40:12] 2026-05-28 08:39:43,497 | INFO     | .. there are 35 such processes running
[2026-05-28 04:40:12] 2026-05-28 08:39:43,497 | INFO     | found 0 job(s) in 20 queues
[2026-05-28 04:40:12] 2026-05-28 08:39:43,497 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-28 04:40:12] 2026-05-28 08:39:43,497 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-28 04:40:12] 2026-05-28 08:40:02,980 | INFO     | [monitor] cgroup control has ended
[2026-05-28 04:40:12] 2026-05-28 08:40:03,990 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140327140255552)>', '<ExcThread(monitor, started 140326706603776)>']
[2026-05-28 04:40:12] 2026-05-28 08:40:04,625 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-28 04:40:12] 2026-05-28 08:40:04,625 | INFO     | [monitor] control thread has ended
[2026-05-28 04:40:12] 2026-05-28 08:40:09,030 | INFO     | all workflow threads have been joined
[2026-05-28 04:40:12] 2026-05-28 08:40:09,032 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-28 04:40:12] 2026-05-28 08:40:09,032 | INFO     | traces error code: 0
[2026-05-28 04:40:12] 2026-05-28 08:40:09,033 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-28 04:40:12] 2026-05-28 08:40:11,672 [wrapper] ==== pilot stdout END ====
[2026-05-28 04:40:12] 2026-05-28 08:40:11,696 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-28 04:40:12] 2026-05-28 08:40:11,729 [wrapper] pilotpid: 826199
[2026-05-28 04:40:12] 2026-05-28 08:40:11,768 [wrapper] Pilot exit status: 0
[2026-05-28 04:40:12] 2026-05-28 08:40:11,937 [wrapper] pandaids: 7154916753
[2026-05-28 04:40:12] 2026-05-28 08:40:12,130 [wrapper] cleanup supervisor_pilot 1959173 826200
[2026-05-28 04:40:12] 2026-05-28 08:40:12,143 [wrapper] Test setup, not cleaning
[2026-05-28 04:40:12] 2026-05-28 08:40:12,177 [wrapper] apfmon messages muted
[2026-05-28 04:40:12] 2026-05-28 08:40:12,180 [wrapper] ==== wrapper stdout END ====
[2026-05-28 04:40:12] 2026-05-28 08:40:12,183 [wrapper] ==== wrapper stderr END ====
[2026-05-28 04:40:12]  *** Error codes and diagnostics ***
[2026-05-28 04:40:12]     "exeErrorCode": 0,
[2026-05-28 04:40:12]     "pilotErrorCode": 0,
[2026-05-28 04:40:12]  *** Listing of results directory ***
[2026-05-28 04:40:12] total 433956
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas      5631 May 27 19:08 queuedata.json
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas    709501 May 27 19:08 pilot3.tar.gz
[2026-05-28 04:40:12] -rwx------. 1 boincer umatlas     36281 May 27 19:08 runpilot2-wrapper.sh
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas       100 May 27 23:16 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-28 04:40:12] -rwxr-xr-x. 1 boincer umatlas      7986 May 27 23:16 run_atlas
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas       105 May 27 23:16 job.xml
[2026-05-28 04:40:12] -rw-r--r--. 2 boincer umatlas 264078298 May 27 23:16 EVNT.49539563._000143.pool.root.1
[2026-05-28 04:40:12] -rw-r--r--. 2 boincer umatlas     15667 May 27 23:16 start_atlas.sh
[2026-05-28 04:40:12] drwxrwx--x. 2 boincer umatlas      4096 May 27 23:16 shared
[2026-05-28 04:40:12] -rw-r--r--. 2 boincer umatlas    722743 May 27 23:16 input.tar.gz
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas         0 May 27 23:16 boinc_lockfile
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas      2565 May 27 23:16 pandaJob.out
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas        57 May 27 23:17 setup.sh.local
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas    996447 May 27 23:17 agis_schedconf.cvmfs.json
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas   1251485 May 27 23:17 cric_ddmendpoints.json
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas       444 May 27 23:18 workernode_map.json
[2026-05-28 04:40:12] drwx------. 5 boincer umatlas      4096 May 27 23:18 pilot3
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas      6774 May 28 04:36 init_data.xml
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas 172509594 May 28 04:38 HITS.49545102._001344.pool.root.1
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas       487 May 28 04:38 boinc_task_state.xml
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas        95 May 28 04:38 pilot_heartbeat.json
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas      1043 May 28 04:38 memory_monitor_summary.json
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas         0 May 28 04:39 agis_ddmendpoints.agis.ALL.json
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas    428660 May 28 04:39 log.49545102._001344.job.log.tgz.1
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas      6457 May 28 04:39 heartbeat_new.json
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas      6348 May 28 04:39 heartbeat.json
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas      8192 May 28 04:40 boinc_mmap_file
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas      4822 May 28 04:40 pilotlog.txt
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas        27 May 28 04:40 wrapper_checkpoint.txt
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas   1494832 May 28 04:40 log.49545102._001344.job.log.1
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas       357 May 28 04:40 output.list
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas       410 May 28 04:40 runtime_log
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas   1945600 May 28 04:40 result.tar.gz
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas      8975 May 28 04:40 runtime_log.err
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas       658 May 28 04:40 7980e6cd53b1.diag
[2026-05-28 04:40:12] -rw-r--r--. 1 boincer umatlas     21677 May 28 04:40 stderr.txt
[2026-05-28 04:40:12] HITS file was successfully produced:
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas 172509594 May 28 04:38 shared/HITS.pool.root.1
[2026-05-28 04:40:12]  *** Contents of shared directory: ***
[2026-05-28 04:40:12] total 428992
[2026-05-28 04:40:12] -rw-r--r--. 2 boincer umatlas 264078298 May 27 23:16 ATLAS.root_0
[2026-05-28 04:40:12] -rw-r--r--. 2 boincer umatlas     15667 May 27 23:16 start_atlas.sh
[2026-05-28 04:40:12] -rw-r--r--. 2 boincer umatlas    722743 May 27 23:16 input.tar.gz
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas 172509594 May 28 04:38 HITS.pool.root.1
[2026-05-28 04:40:12] -rw-------. 1 boincer umatlas   1945600 May 28 04:40 result.tar.gz
04:40:14 (821256): run_atlas exited; CPU time 38877.180064
04:40:14 (821256): called boinc_finish(0)

</stderr_txt>
]]>

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