Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:34:23 (1229307): wrapper (7.7.26015): starting
02:34:23 (1229307): wrapper: running run_atlas (--nthreads 4)
[2026-05-28 02:34:23] Arguments: --nthreads 4
[2026-05-28 02:34:23] Threads: 4
[2026-05-28 02:34:23] Checking for CVMFS
[2026-05-28 02:34:23] No cvmfs_config command found, will try listing directly
[2026-05-28 02:34:23] CVMFS is ok
[2026-05-28 02:34:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-28 02:34:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-28 02:34:23] Further information can be found at the LHC@home message board.
[2026-05-28 02:34:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-28 02:34:23] Checking for apptainer binary...
[2026-05-28 02:34:23] which: no apptainer in ((null))
[2026-05-28 02:34:23] apptainer is not installed, using version from CVMFS
[2026-05-28 02:34:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-28 02:34:24] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot52/slots/6/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut13.grid.cesnet.cz
[2026-05-28 02:34:24] apptainer works
[2026-05-28 02:34:24] Set ATHENA_PROC_NUMBER=4
[2026-05-28 02:34:24] Set ATHENA_CORE_NUMBER=4
[2026-05-28 02:34:24] Starting ATLAS job with PandaID=7155140109
[2026-05-28 02:34:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot52/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-28 04:39:02]  *** The last 200 lines of the pilot log: ***
[2026-05-28 04:39:02] 2026-05-28 02:38:18,760 | INFO     | job 7155140109 has state=finished
[2026-05-28 04:39:02] 2026-05-28 02:38:18,760 | INFO     | preparing for final server update for job 7155140109 in state='finished'
[2026-05-28 04:39:02] 2026-05-28 02:38:18,761 | INFO     | reading metadata from: /var/lib/boinc/var/slot52/slots/6/PanDA_Pilot-7155140109/jobReport.json
[2026-05-28 04:39:02] 2026-05-28 02:38:18,764 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot52/slots/6/workernode_map.json
[2026-05-28 04:39:02] 2026-05-28 02:38:18,764 | INFO     | this job has now completed (state=finished)
[2026-05-28 04:39:02] 2026-05-28 02:38:18,764 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-28 04:39:02] 2026-05-28 02:38:18,765 | INFO     | log transfer has been attempted: DONE
[2026-05-28 04:39:02] 2026-05-28 02:38:18,765 | INFO     | job 7155140109 has finished - writing final server update
[2026-05-28 04:39:02] 2026-05-28 02:38:18,765 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2342321/.job.ad'
[2026-05-28 04:39:02] 2026-05-28 02:38:18,765 | INFO     | total number of processed events: 400 (read)
[2026-05-28 04:39:02] 2026-05-28 02:38:18,789 | INFO     | using path: /var/lib/boinc/var/slot52/slots/6/PanDA_Pilot-7155140109/memory_monitor_summary.json (trf name=prmon)
[2026-05-28 04:39:02] 2026-05-28 02:38:18,790 | INFO     | extracted standard info from prmon json
[2026-05-28 04:39:02] 2026-05-28 02:38:18,790 | INFO     | extracted standard memory fields from prmon json
[2026-05-28 04:39:02] 2026-05-28 02:38:18,790 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-28 04:39:02] 2026-05-28 02:38:18,790 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-28 04:39:02] 2026-05-28 02:38:18,793 | INFO     | fitting pss+swap vs Time
[2026-05-28 04:39:02] 2026-05-28 02:38:18,793 | INFO     | sum of square deviations: 549294020.0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,794 | INFO     | sum of deviations: 11162393903.999998
[2026-05-28 04:39:02] 2026-05-28 02:38:18,794 | INFO     | mean x (centered): 0.0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,794 | INFO     | mean y: 2317976.661157025
[2026-05-28 04:39:02] 2026-05-28 02:38:18,794 | INFO     | intersect: 2317976.661157025
[2026-05-28 04:39:02] 2026-05-28 02:38:18,794 | INFO     | chi2: 1.3249438816556225
[2026-05-28 04:39:02] 2026-05-28 02:38:18,795 | INFO     | sum of square deviations: 483971865.0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,795 | INFO     | sum of deviations: 10706714479.5
[2026-05-28 04:39:02] 2026-05-28 02:38:18,795 | INFO     | mean x (centered): 0.0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,796 | INFO     | mean y: 2316912.2327586208
[2026-05-28 04:39:02] 2026-05-28 02:38:18,796 | INFO     | intersect: 2316912.2327586208
[2026-05-28 04:39:02] 2026-05-28 02:38:18,796 | INFO     | chi2: 1.3270466368563356
[2026-05-28 04:39:02] 2026-05-28 02:38:18,796 | INFO     | current chi2=1.3270466368563356 (change=-0.15870522743088297 %)
[2026-05-28 04:39:02] 2026-05-28 02:38:18,796 | INFO     | right removable region: 115
[2026-05-28 04:39:02] 2026-05-28 02:38:18,796 | INFO     | sum of square deviations: 483971865.0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,797 | INFO     | sum of deviations: -3544860029.5000005
[2026-05-28 04:39:02] 2026-05-28 02:38:18,797 | INFO     | mean x (centered): 0.0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,797 | INFO     | mean y: 2351520.077586207
[2026-05-28 04:39:02] 2026-05-28 02:38:18,797 | INFO     | intersect: 2351520.077586207
[2026-05-28 04:39:02] 2026-05-28 02:38:18,797 | INFO     | chi2: 0.004283104189090936
[2026-05-28 04:39:02] 2026-05-28 02:38:18,798 | INFO     | current chi2=0.004283104189090936 (change=99.67673316218202 %)
[2026-05-28 04:39:02] 2026-05-28 02:38:18,798 | INFO     | sum of square deviations: 424045160.0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,798 | INFO     | sum of deviations: -3088957284.0000005
[2026-05-28 04:39:02] 2026-05-28 02:38:18,798 | INFO     | mean x (centered): 0.0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,798 | INFO     | mean y: 2350351.1801801804
[2026-05-28 04:39:02] 2026-05-28 02:38:18,799 | INFO     | intersect: 2350351.1801801804
[2026-05-28 04:39:02] 2026-05-28 02:38:18,799 | INFO     | chi2: 0.004223562310926901
[2026-05-28 04:39:02] 2026-05-28 02:38:18,799 | INFO     | current chi2=0.004223562310926901 (change=1.3901571275265332 %)
[2026-05-28 04:39:02] 2026-05-28 02:38:18,799 | INFO     | left removable region: 10
[2026-05-28 04:39:02] 2026-05-28 02:38:18,799 | INFO     | sum of square deviations: 358927660.0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,800 | INFO     | sum of deviations: -2933004867.0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,800 | INFO     | mean x (centered): 0.0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,800 | INFO     | mean y: 2350789.8857142855
[2026-05-28 04:39:02] 2026-05-28 02:38:18,800 | INFO     | intersect: 2350789.8857142855
[2026-05-28 04:39:02] 2026-05-28 02:38:18,800 | INFO     | chi2: 0.003893100144585764
[2026-05-28 04:39:02] 2026-05-28 02:38:18,800 | INFO     | current memory leak: -8.17 B/s (using 105 data points, chi2=0.00)
[2026-05-28 04:39:02] 2026-05-28 02:38:18,801 | INFO     | could have reported an average CPU frequency of 2757 MHz (8 samples)
[2026-05-28 04:39:02] 2026-05-28 02:38:18,801 | INFO     | ..............................
[2026-05-28 04:39:02] 2026-05-28 02:38:18,801 | INFO     | . Timing measurements:
[2026-05-28 04:39:02] 2026-05-28 02:38:18,801 | INFO     | . get job = 0 s
[2026-05-28 04:39:02] 2026-05-28 02:38:18,802 | INFO     | . initial setup = 7 s
[2026-05-28 04:39:02] 2026-05-28 02:38:18,802 | INFO     | . payload setup = 14 s
[2026-05-28 04:39:02] 2026-05-28 02:38:18,802 | INFO     | . stage-in = 0 s
[2026-05-28 04:39:02] 2026-05-28 02:38:18,802 | INFO     | . payload execution = 7377 s
[2026-05-28 04:39:02] 2026-05-28 02:38:18,802 | INFO     | . stage-out = 0 s
[2026-05-28 04:39:02] 2026-05-28 02:38:18,802 | INFO     | . log creation = 0 s
[2026-05-28 04:39:02] 2026-05-28 02:38:18,802 | INFO     | ..............................
[2026-05-28 04:39:02] 2026-05-28 02:38:18,895 | INFO     | 
[2026-05-28 04:39:02] 2026-05-28 02:38:18,895 | INFO     | job summary report
[2026-05-28 04:39:02] 2026-05-28 02:38:18,895 | INFO     | --------------------------------------------------
[2026-05-28 04:39:02] 2026-05-28 02:38:18,895 | INFO     | PanDA job id: 7155140109
[2026-05-28 04:39:02] 2026-05-28 02:38:18,895 | INFO     | task id: 49545126
[2026-05-28 04:39:02] 2026-05-28 02:38:18,896 | INFO     | errors: (none)
[2026-05-28 04:39:02] 2026-05-28 02:38:18,896 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-28 04:39:02] 2026-05-28 02:38:18,896 | INFO     | pilot state: finished 
[2026-05-28 04:39:02] 2026-05-28 02:38:18,896 | INFO     | transexitcode: 0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,896 | INFO     | exeerrorcode: 0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,896 | INFO     | exeerrordiag: 
[2026-05-28 04:39:02] 2026-05-28 02:38:18,896 | INFO     | exitcode: 0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,896 | INFO     | exitmsg: OK
[2026-05-28 04:39:02] 2026-05-28 02:38:18,896 | INFO     | cpuconsumptiontime: 28292 s
[2026-05-28 04:39:02] 2026-05-28 02:38:18,896 | INFO     | nevents: 400
[2026-05-28 04:39:02] 2026-05-28 02:38:18,896 | INFO     | neventsw: 0
[2026-05-28 04:39:02] 2026-05-28 02:38:18,897 | INFO     | pid: 1239653
[2026-05-28 04:39:02] 2026-05-28 02:38:18,897 | INFO     | pgrp: 1239653
[2026-05-28 04:39:02] 2026-05-28 02:38:18,897 | INFO     | corecount: 4
[2026-05-28 04:39:02] 2026-05-28 02:38:18,897 | INFO     | event service: False
[2026-05-28 04:39:02] 2026-05-28 02:38:18,897 | INFO     | sizes: {0: 2265801, 1: 2267630, 11: 2267630, 7395: 2295164, 7397: 2304184, 7399: 2304240, 7402: 2304562}
[2026-05-28 04:39:02] 2026-05-28 02:38:18,897 | INFO     | --------------------------------------------------
[2026-05-28 04:39:02] 2026-05-28 02:38:18,897 | INFO     | 
[2026-05-28 04:39:02] 2026-05-28 02:38:18,900 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot52/slots/6
[2026-05-28 04:39:02] 2026-05-28 02:38:18,935 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,935 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,935 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,935 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,935 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,935 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,935 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,935 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,936 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,936 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,936 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,936 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,936 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,936 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,936 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,936 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,936 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,936 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-28 04:39:02] 2026-05-28 02:38:18,936 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,936 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-28 04:39:02] 2026-05-28 02:38:18,937 | INFO     | job 7155140109 has completed (purged errors)
[2026-05-28 04:39:02] 2026-05-28 02:38:18,937 | INFO     | overall cleanup function is called
[2026-05-28 04:39:02] 2026-05-28 02:38:19,946 | INFO     | --- collectZombieJob: --- 10, [1239653]
[2026-05-28 04:39:02] 2026-05-28 02:38:19,946 | INFO     | zombie collector waiting for pid 1239653
[2026-05-28 04:39:02] 2026-05-28 02:38:19,946 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-28 04:39:02] 2026-05-28 02:38:19,946 | INFO     | collected zombie processes
[2026-05-28 04:39:02] 2026-05-28 02:38:19,946 | INFO     | will attempt to kill all subprocesses of pid=1239653
[2026-05-28 04:39:02] 2026-05-28 02:38:20,544 | INFO     | process IDs to be killed: [1239653] (in reverse order)
[2026-05-28 04:39:02] 2026-05-28 02:38:20,842 | WARNING  | found no corresponding commands to process id(s)
[2026-05-28 04:39:02] 2026-05-28 02:38:20,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-28 04:39:02] 2026-05-28 02:38:20,869 | INFO     | did not find any defunct processes belonging to 1239653
[2026-05-28 04:39:02] 2026-05-28 02:38:20,893 | INFO     | did not find any defunct processes belonging to 1239653
[2026-05-28 04:39:02] 2026-05-28 02:38:20,893 | INFO     | Ready for new job
[2026-05-28 04:39:02] 2026-05-28 02:38:20,895 | INFO     | ***************************************
[2026-05-28 04:39:02] 2026-05-28 02:38:20,895 | INFO     | ***  PanDA Pilot version 3.13.1.30  ***
[2026-05-28 04:39:02] 2026-05-28 02:38:20,895 | INFO     | ***************************************
[2026-05-28 04:39:02] 2026-05-28 02:38:20,895 | INFO     | 
[2026-05-28 04:39:02] 2026-05-28 02:38:20,904 | INFO     | architecture information:
[2026-05-28 04:39:02] 2026-05-28 02:38:20,904 | INFO     | executing command: cat /etc/os-release
[2026-05-28 04:39:02] 2026-05-28 02:38:20,933 | INFO     | cat /etc/os-release:
[2026-05-28 04:39:02] NAME="CentOS Linux"
[2026-05-28 04:39:02] VERSION="7 (Core)"
[2026-05-28 04:39:02] ID="centos"
[2026-05-28 04:39:02] ID_LIKE="rhel fedora"
[2026-05-28 04:39:02] VERSION_ID="7"
[2026-05-28 04:39:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-28 04:39:02] ANSI_COLOR="0;31"
[2026-05-28 04:39:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-28 04:39:02] HOME_URL="https://www.centos.org/"
[2026-05-28 04:39:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-28 04:39:02] 
[2026-05-28 04:39:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-28 04:39:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-28 04:39:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-28 04:39:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-28 04:39:02] 
[2026-05-28 04:39:02] 2026-05-28 02:38:20,934 | INFO     | ***************************************
[2026-05-28 04:39:02] 2026-05-28 02:38:21,437 | INFO     | executing command: df -mP /var/lib/boinc/var/slot52/slots/6
[2026-05-28 04:39:02] 2026-05-28 02:38:21,461 | INFO     | sufficient remaining disk space (319417221120 B)
[2026-05-28 04:39:02] 2026-05-28 02:38:21,462 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-28 04:39:02] 2026-05-28 02:38:21,462 | INFO     | current server update state: UPDATING_FINAL
[2026-05-28 04:39:02] 2026-05-28 02:38:21,462 | INFO     | update_server=False
[2026-05-28 04:39:02] 2026-05-28 02:38:21,462 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-28 04:39:02] 2026-05-28 02:38:21,933 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-28 04:39:02] 2026-05-28 02:38:21,934 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-28 04:39:02] 2026-05-28 02:38:21,934 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-28 04:39:02] 2026-05-28 02:38:21,934 | INFO     | will abort loop
[2026-05-28 04:39:02] 2026-05-28 02:38:21,949 | INFO     | all payload control threads have been joined
[2026-05-28 04:39:02] 2026-05-28 02:38:22,076 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-28 04:39:02] 2026-05-28 02:38:22,160 | INFO     | all job control threads have been joined
[2026-05-28 04:39:02] 2026-05-28 02:38:22,333 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-28 04:39:02] 2026-05-28 02:38:22,361 | INFO     | all data control threads have been joined
[2026-05-28 04:39:02] 2026-05-28 02:38:22,463 | INFO     | [job] retrieve thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:22,502 | INFO     | [payload] validate_post thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:22,513 | INFO     | [job] validate thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:22,939 | INFO     | [job] job monitor thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:22,942 | INFO     | [job] create_data_payload thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:22,956 | INFO     | [payload] control thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:22,997 | INFO     | [payload] validate_pre thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:23,166 | INFO     | [job] control thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:23,312 | INFO     | [payload] execute_payloads thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:23,359 | INFO     | [payload] failed_post thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:23,367 | INFO     | [data] control thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:23,466 | INFO     | [data] copytool_in thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:23,905 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-28 04:39:02] 2026-05-28 02:38:24,081 | INFO     | [data] copytool_out thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:24,910 | INFO     | [job] queue monitor thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:26,339 | INFO     | [data] queue_monitor thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:31,683 | INFO     | job.realtimelogging is not enabled
[2026-05-28 04:39:02] 2026-05-28 02:38:32,688 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-28 04:39:02] 2026-05-28 02:38:52,276 | INFO     | PID=1233436 has CPU usage=9.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-28 04:39:02] 2026-05-28 02:38:52,276 | INFO     | .. there are 18 such processes running
[2026-05-28 04:39:02] 2026-05-28 02:38:52,276 | INFO     | found 0 job(s) in 20 queues
[2026-05-28 04:39:02] 2026-05-28 02:38:52,276 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-28 04:39:02] 2026-05-28 02:38:52,276 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-28 04:39:02] 2026-05-28 02:38:56,298 | INFO     | [monitor] cgroup control has ended
[2026-05-28 04:39:02] 2026-05-28 02:38:57,303 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23106155226944)>', '<ExcThread(monitor, started 23105848207104)>']
[2026-05-28 04:39:02] 2026-05-28 02:38:58,307 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-28 04:39:02] 2026-05-28 02:38:58,307 | INFO     | [monitor] control thread has ended
[2026-05-28 04:39:02] 2026-05-28 02:39:02,329 | INFO     | all workflow threads have been joined
[2026-05-28 04:39:02] 2026-05-28 02:39:02,330 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-28 04:39:02] 2026-05-28 02:39:02,332 | INFO     | traces error code: 0
[2026-05-28 04:39:02] 2026-05-28 02:39:02,332 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-28 04:39:02] 2026-05-28 02:39:02,513 [wrapper] ==== pilot stdout END ====
[2026-05-28 04:39:02] 2026-05-28 02:39:02,518 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-28 04:39:02] 2026-05-28 02:39:02,522 [wrapper] pilotpid: 1233436
[2026-05-28 04:39:02] 2026-05-28 02:39:02,526 [wrapper] Pilot exit status: 0
[2026-05-28 04:39:02] 2026-05-28 02:39:02,541 [wrapper] pandaids: 7155140109
[2026-05-28 04:39:02] 2026-05-28 02:39:02,717 [wrapper] cleanup supervisor_pilot 1546680 1233437
[2026-05-28 04:39:02] 2026-05-28 02:39:02,722 [wrapper] Test setup, not cleaning
[2026-05-28 04:39:02] 2026-05-28 02:39:02,727 [wrapper] apfmon messages muted
[2026-05-28 04:39:02] 2026-05-28 02:39:02,730 [wrapper] ==== wrapper stdout END ====
[2026-05-28 04:39:02] 2026-05-28 02:39:02,734 [wrapper] ==== wrapper stderr END ====
[2026-05-28 04:39:02]  *** Error codes and diagnostics ***
[2026-05-28 04:39:02]     "exeErrorCode": 0,
[2026-05-28 04:39:02]     "pilotErrorCode": 0,
[2026-05-28 04:39:02]  *** Listing of results directory ***
[2026-05-28 04:39:02] total 441788
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc    709501 May 27 23:24 pilot3.tar.gz
[2026-05-28 04:39:02] -rwx------. 1 boinc boinc     36281 May 27 23:25 runpilot2-wrapper.sh
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc      5631 May 27 23:25 queuedata.json
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc       100 May 28 02:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-28 04:39:02] -rwxr-xr-x. 1 boinc boinc      7986 May 28 02:34 run_atlas
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc       105 May 28 02:34 job.xml
[2026-05-28 04:39:02] -rw-r--r--. 2 boinc boinc 269262071 May 28 02:34 EVNT.49539704._000823.pool.root.1
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc      6540 May 28 02:34 init_data.xml
[2026-05-28 04:39:02] -rw-r--r--. 2 boinc boinc     15667 May 28 02:34 start_atlas.sh
[2026-05-28 04:39:02] drwxrwx--x. 2 boinc boinc      4096 May 28 02:34 shared
[2026-05-28 04:39:02] -rw-r--r--. 2 boinc boinc    722755 May 28 02:34 input.tar.gz
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc         0 May 28 02:34 boinc_lockfile
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc      2570 May 28 02:34 pandaJob.out
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc    996423 May 28 02:34 agis_schedconf.cvmfs.json
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc         0 May 28 02:34 agis_ddmendpoints.agis.ALL.json
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc   1251485 May 28 02:34 cric_ddmendpoints.json
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc       438 May 28 02:34 workernode_map.json
[2026-05-28 04:39:02] drwx------. 5 boinc boinc      4096 May 28 02:34 pilot3
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc 177223703 May 28 04:37 HITS.49545126._025140.pool.root.1
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc       487 May 28 04:37 boinc_task_state.xml
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc        95 May 28 04:38 pilot_heartbeat.json
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc      1024 May 28 04:38 memory_monitor_summary.json
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc    284964 May 28 04:38 log.49545126._025140.job.log.tgz.1
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc      6408 May 28 04:38 heartbeat_new.json
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc      6299 May 28 04:38 heartbeat.json
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc      8192 May 28 04:38 boinc_mmap_file
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc        27 May 28 04:38 wrapper_checkpoint.txt
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc      5091 May 28 04:39 pilotlog.txt
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc    704777 May 28 04:39 log.49545126._025140.job.log.1
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc       357 May 28 04:39 output.list
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc       410 May 28 04:39 runtime_log
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc   1003520 May 28 04:39 result.tar.gz
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc      8827 May 28 04:39 runtime_log.err
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc       662 May 28 04:39 6158d9117925.diag
[2026-05-28 04:39:02] -rw-r--r--. 1 boinc boinc     21036 May 28 04:39 stderr.txt
[2026-05-28 04:39:02] HITS file was successfully produced:
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc 177223703 May 28 04:37 shared/HITS.pool.root.1
[2026-05-28 04:39:02]  *** Contents of shared directory: ***
[2026-05-28 04:39:02] total 437736
[2026-05-28 04:39:02] -rw-r--r--. 2 boinc boinc 269262071 May 28 02:34 ATLAS.root_0
[2026-05-28 04:39:02] -rw-r--r--. 2 boinc boinc     15667 May 28 02:34 start_atlas.sh
[2026-05-28 04:39:02] -rw-r--r--. 2 boinc boinc    722755 May 28 02:34 input.tar.gz
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc 177223703 May 28 04:37 HITS.pool.root.1
[2026-05-28 04:39:02] -rw-------. 1 boinc boinc   1003520 May 28 04:39 result.tar.gz
04:39:04 (1229307): run_atlas exited; CPU time 28668.058480
04:39:04 (1229307): called boinc_finish(0)

</stderr_txt>
]]>

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