Stderr output

<core_client_version>7.16.11</core_client_version>
<![CDATA[
<stderr_txt>
2026-05-28 06:51:35 (9140): vboxwrapper version 26210
2026-05-28 06:51:35 (9140): BOINC client version: 7.16.11
2026-05-28 06:51:36 (9140): Detected: VirtualBox VboxManage Interface (Version: 6.1.12)
2026-05-28 06:51:36 (9140): Successfully copied 'init_data.xml' to the shared directory.
2026-05-28 06:51:36 (9140): Create VM. (boinc_b97b3de4e9bc6a55, slot#2)
2026-05-28 06:51:37 (9140): Setting Memory Size for VM. (4300MB)
2026-05-28 06:51:37 (9140): Setting CPU Count for VM. (3)
2026-05-28 06:51:37 (9140): Setting Chipset Options for VM.
2026-05-28 06:51:38 (9140): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-05-28 06:51:38 (9140): Setting Boot Options for VM.
2026-05-28 06:51:38 (9140): Setting Network Configuration for NAT. (Driver: virtio)
2026-05-28 06:51:39 (9140): Enabling VM Network Access.
2026-05-28 06:51:39 (9140): Disabling USB Support for VM.
2026-05-28 06:51:39 (9140): Disabling COM Port Support for VM.
2026-05-28 06:51:39 (9140): Disabling LPT Port Support for VM.
2026-05-28 06:51:40 (9140): Disabling Audio Support for VM.
2026-05-28 06:51:40 (9140): Disabling Clipboard Support for VM.
2026-05-28 06:51:40 (9140): Disabling Drag and Drop Support for VM.
2026-05-28 06:51:40 (9140): Adding storage controller(s) to VM.
2026-05-28 06:51:41 (9140): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-05-28 06:51:42 (9140): Adding VirtualBox Guest Additions to VM.
2026-05-28 06:51:42 (9140): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-05-28 06:51:42 (9140): forwarding host port 54581 to guest port 80
2026-05-28 06:51:43 (9140): Enabling remote desktop for VM.
2026-05-28 06:51:43 (9140): Required extension pack not installed, remote desktop not enabled.
2026-05-28 06:51:43 (9140): Enabling shared directory for VM.
2026-05-28 06:51:43 (9140): Starting VM using VBoxManage interface. (boinc_b97b3de4e9bc6a55, slot#2)
2026-05-28 06:51:47 (9140): Successfully started VM. (PID = '8472')
2026-05-28 06:51:47 (9140): Reporting VM Process ID to BOINC.
2026-05-28 06:51:47 (9140): Guest Log: BIOS: VirtualBox 6.1.12
2026-05-28 06:51:47 (9140): Guest Log: CPUID EDX: 0x178bfbff
2026-05-28 06:51:47 (9140): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-05-28 06:51:47 (9140): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-05-28 06:51:47 (9140): VM state change detected. (old = 'poweredoff', new = 'running')
2026-05-28 06:51:47 (9140): Detected: Web Application Enabled (http://localhost:54581)
2026-05-28 06:51:47 (9140): Preference change detected
2026-05-28 06:51:47 (9140): Setting CPU throttle for VM. (100%)
2026-05-28 06:51:47 (9140): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2026-05-28 06:51:49 (9140): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-05-28 06:51:49 (9140): Guest Log: BIOS: Booting from Hard Disk...
2026-05-28 06:51:52 (9140): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-05-28 06:51:52 (9140): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-05-28 06:51:52 (9140): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-05-28 06:51:58 (9140): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-05-28 06:51:58 (9140): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2026-05-28 06:52:04 (9140): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-05-28 06:52:04 (9140): Guest Log: 00:00:00.000169 main     Log opened 2026-05-28T06:52:02.788182000Z
2026-05-28 06:52:04 (9140): Guest Log: 00:00:00.000274 main     OS Product: Linux
2026-05-28 06:52:04 (9140): Guest Log: 00:00:00.000299 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-05-28 06:52:04 (9140): Guest Log: 00:00:00.000319 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-05-28 06:52:04 (9140): Guest Log: 00:00:00.000339 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-05-28 06:52:04 (9140): Guest Log: 00:00:00.000340 main     Process ID: 1308
2026-05-28 06:52:04 (9140): Guest Log: 00:00:00.000340 main     Package type: LINUX_64BITS_GENERIC
2026-05-28 06:52:04 (9140): Guest Log: 00:00:00.000986 main     5.2.32 r132073 started. Verbose level = 0
2026-05-28 06:52:04 (9140): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-05-28 06:52:04 (9140): Guest Log: [INFO] Mounting shared directory
2026-05-28 06:52:04 (9140): Guest Log: [INFO] Checking for init_data.xml
2026-05-28 06:52:06 (9140): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-05-28 06:52:06 (9140): Guest Log: [INFO] Detected branch: prod
2026-05-28 06:52:07 (9140): Guest Log: This is the prod version of the ATLAS job wrapper
2026-05-28 06:52:07 (9140): Guest Log: Copying input files
2026-05-28 06:52:08 (9140): Guest Log: Copied input files into RunAtlas.
2026-05-28 06:52:08 (9140): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-05-28 06:52:08 (9140): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-05-28 06:52:08 (9140): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-05-28 06:52:08 (9140): Guest Log: Further information can be found at the LHC@home message board.
2026-05-28 06:52:14 (9140): Guest Log: 00:00:10.306229 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 189 092 477 000ns (GuestNow=1 779 943 933 697 726 000 ns GuestLast=1 779 951 122 790 203 000 ns fSetTimeLastLoop=true )
2026-05-28 06:52:17 (9140): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-05-28 06:52:17 (9140): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-05-28 06:52:17 (9140): Guest Log: 2.6.3.0 1583 0 30144 159880 4 1 3117654 4096001 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-05-28 06:52:18 (9140): Guest Log: copied the webapp to /var/www
2026-05-28 06:52:18 (9140): Guest Log: ATHENA_PROC_NUMBER=3
2026-05-28 06:52:18 (9140): Guest Log: ATHENA_CORE_NUMBER=3
2026-05-28 06:52:18 (9140): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-05-28 06:52:18 (9140): Guest Log:  *** Starting ATLAS job. (PandaID=7155171919 taskID=49545102) ***
2026-05-28 08:32:13 (9140): Status Report: Elapsed Time: '6000.000000'
2026-05-28 08:32:13 (9140): Status Report: CPU Time: '17165.046875'
2026-05-28 08:54:30 (9140): VM state change detected. (old = 'running', new = 'paused')
2026-05-28 11:11:53 (9140): Guest Log: 02:02:24.866585 timesync vgsvcTimeSyncWorker: Radical host time change: 8 242 416 000 000ns (HostNow=1 779 959 454 846 000 000 ns HostLast=1 779 951 212 430 000 000 ns)
2026-05-28 11:11:53 (9140): VM state change detected. (old = 'paused', new = 'running')
2026-05-28 11:11:59 (9140): Guest Log: 02:02:34.868407 timesync vgsvcTimeSyncWorker: Radical guest time change: 8 196 589 521 000ns (GuestNow=1 779 959 464 847 861 000 ns GuestLast=1 779 951 268 258 340 000 ns fSetTimeLastLoop=true )
2026-05-28 12:06:53 (9140): Guest Log:  *** Job finished ***
2026-05-28 12:06:53 (9140): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:05:52,004 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:05:52,004 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:05:53,959 | INFO     | [monitor] cgroup control has ended
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:05:55,077 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140453189375808)>', '<ExcThread(monitor, started 140452502152960)>']
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:05:55,090 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:05:55,090 | INFO     | [monitor] control thread has ended
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,084 | INFO     | all workflow threads have been joined
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,084 | INFO     | end of generic workflow (traces error code: 0)
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,084 | INFO     | traces error code: 0
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,085 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,207 [wrapper] ==== pilot stdout END ====
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,212 [wrapper] ==== wrapper stdout RESUME ====
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,217 [wrapper] pilotpid: 5961
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,222 [wrapper] Pilot exit status: 0
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,343 [wrapper] pandaids: 7155171919
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,375 [wrapper] cleanup supervisor_pilot 26917 5962
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,380 [wrapper] Test setup, not cleaning
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,385 [wrapper] apfmon messages muted
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,390 [wrapper] ==== wrapper stdout END ====
2026-05-28 12:06:53 (9140): Guest Log: 2026-05-28 10:06:00,395 [wrapper] ==== wrapper stderr END ====
2026-05-28 12:06:53 (9140): Guest Log:  *** Error codes and diagnostics ***
2026-05-28 12:06:53 (9140): Guest Log:     "exeErrorCode": 0,
2026-05-28 12:06:53 (9140): Guest Log:     "pilotErrorCode": 0,
2026-05-28 12:06:53 (9140): Guest Log:  *** Listing of results directory ***
2026-05-28 12:06:53 (9140): Guest Log: total 172980
2026-05-28 12:06:53 (9140): Guest Log: -rw-r--r--. 1 atlas atlas    709501 May 27 23:08 pilot3.tar.gz
2026-05-28 12:06:53 (9140): Guest Log: -rwx------. 1 atlas atlas     36281 May 27 23:09 runpilot2-wrapper.sh
2026-05-28 12:06:53 (9140): Guest Log: -rw-r--r--. 1 atlas atlas      5631 May 27 23:10 queuedata.json
2026-05-28 12:06:53 (9140): Guest Log: -rwxr-xr-x. 1 atlas atlas      8755 May 28 04:52 init_data.xml
2026-05-28 12:06:53 (9140): Guest Log: -rwxr-xr-x. 1 atlas atlas    722742 May 28 04:52 input.tar.gz
2026-05-28 12:06:53 (9140): Guest Log: -rwxr-xr-x. 1 atlas atlas     15667 May 28 04:52 start_atlas.sh
2026-05-28 12:06:53 (9140): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 28 04:52 EVNT.49539563._000031.pool.root.1 -> /data/./ATLAS.root_0
2026-05-28 12:06:53 (9140): Guest Log: -rw-r--r--. 1 atlas atlas      2564 May 28 04:52 pandaJob.out
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas    996439 May 28 04:53 agis_schedconf.cvmfs.json
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas   1251485 May 28 04:53 cric_ddmendpoints.json
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas       424 May 28 04:53 workernode_map.json
2026-05-28 12:06:53 (9140): Guest Log: drwx------. 5 atlas atlas      4096 May 28 04:53 pilot3
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas 170769912 May 28 10:04 HITS.49545102._002544.pool.root.1
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas      1028 May 28 10:05 memory_monitor_summary.json
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas         0 May 28 10:05 agis_ddmendpoints.agis.ALL.json
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas    268234 May 28 10:05 log.49545102._002544.job.log.tgz.1
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas      6422 May 28 10:05 heartbeat_new.json
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas      6313 May 28 10:05 heartbeat.json
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas        97 May 28 10:05 pilot_heartbeat.json
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas      5106 May 28 10:06 pilotlog.txt
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas    985123 May 28 10:06 log.49545102._002544.job.log.1
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas       357 May 28 10:06 output.list
2026-05-28 12:06:53 (9140): Guest Log: -rw-r--r--. 1 atlas atlas       410 May 28 10:06 runtime_log
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas   1269760 May 28 10:06 result.tar.gz
2026-05-28 12:06:53 (9140): Guest Log: -rw-r--r--. 1 atlas atlas      8369 May 28 10:06 runtime_log.err
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas       654 May 28 10:06 79af257d2d50.diag
2026-05-28 12:06:53 (9140): Guest Log: Looking for outputfile HITS.49545102._002544.pool.root.1
2026-05-28 12:06:53 (9140): Guest Log: HITS file was successfully produced
2026-05-28 12:06:53 (9140): Guest Log: -rw-------. 1 atlas atlas 170769912 May 28 10:04 /home/atlas/RunAtlas/HITS.49545102._002544.pool.root.1
2026-05-28 12:06:54 (9140): Guest Log: Successfully finished the ATLAS job!
2026-05-28 12:06:54 (9140): Guest Log: Copying the results back to the shared directory!
2026-05-28 12:06:54 (9140): Guest Log:  *** Contents of shared directory: ***
2026-05-28 12:06:54 (9140): Guest Log: total 424836
2026-05-28 12:06:54 (9140): Guest Log: -rwxrwxrwx. 1 root root 262237836 May 28 04:51 ATLAS.root_0
2026-05-28 12:06:54 (9140): Guest Log: -rwxrwxrwx. 1 root root 170769912 May 28  2026 HITS.pool.root.1
2026-05-28 12:06:54 (9140): Guest Log: -rwxrwxrwx. 1 root root      8755 May 28 04:51 init_data.xml
2026-05-28 12:06:54 (9140): Guest Log: -rwxrwxrwx. 1 root root    722742 May 28 03:08 input.tar.gz
2026-05-28 12:06:54 (9140): Guest Log: -rwxrwxrwx. 1 root root   1269760 May 28  2026 result.tar.gz
2026-05-28 12:06:54 (9140): Guest Log: -rwxrwxrwx. 1 root root     15667 May 28 03:08 start_atlas.sh
2026-05-28 12:06:54 (9140): Guest Log:  *** Success! Shutting down the machine. ***
2026-05-28 12:06:54 (9140): VM Completion File Detected.
2026-05-28 12:06:54 (9140): Powering off VM.
2026-05-28 12:06:55 (9140): Successfully stopped VM.
2026-05-28 12:06:55 (9140): Deregistering VM. (boinc_b97b3de4e9bc6a55, slot#2)
2026-05-28 12:06:55 (9140): Removing network bandwidth throttle group from VM.
2026-05-28 12:06:55 (9140): Removing VM from VirtualBox.
2026-05-28 12:07:00 (9140): called boinc_finish(0)

</stderr_txt>
]]>

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