Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
16:36:14 (16415): wrapper (7.7.26015): starting
16:36:14 (16415): wrapper: running run_atlas (--nthreads 8)
[2026-05-27 16:36:14] Arguments: --nthreads 8
[2026-05-27 16:36:14] Threads: 8
[2026-05-27 16:36:14] Checking for CVMFS
[2026-05-27 16:36:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-27 16:36:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-27 16:36:14] Running cvmfs_config stat atlas.cern.ch
[2026-05-27 16:36:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-27 16:36:14] 2.11.0.0 3996 22010 58948 159858 1 188 2049331 4096000 1662 130560 0 1891827 99.562 1334392 639 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-05-27 16:36:14] CVMFS is ok
[2026-05-27 16:36:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-27 16:36:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-27 16:36:14] Further information can be found at the LHC@home message board.
[2026-05-27 16:36:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-27 16:36:14] Checking for apptainer binary...
[2026-05-27 16:36:14] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-05-27 16:36:14] apptainer is not installed, using version from CVMFS
[2026-05-27 16:36:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-27 16:36:15] WARNING: Environment variable TMPDIR already has value [/tmp/job_11657785/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node060
[2026-05-27 16:36:15] apptainer works
[2026-05-27 16:36:15] Set ATHENA_PROC_NUMBER=8
[2026-05-27 16:36:15] Set ATHENA_CORE_NUMBER=8
[2026-05-27 16:36:15] Starting ATLAS job with PandaID=7154141267
[2026-05-27 16:36:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11657785/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-27 17:35:36]  *** The last 200 lines of the pilot log: ***
[2026-05-27 17:35:36]  filetype=log
[2026-05-27 17:35:36]  guid=15c00523-e602-4a12-ab4d-b421040fc08b
[2026-05-27 17:35:36]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-27 17:35:36]  is_altstaged=None
[2026-05-27 17:35:36]  is_tar=False
[2026-05-27 17:35:36]  lfn=log.49545126._018070.job.log.tgz.1
[2026-05-27 17:35:36]  mtime=0
[2026-05-27 17:35:36]  protocol_id=None
[2026-05-27 17:35:36]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-27 17:35:36]  replicas=None
[2026-05-27 17:35:36]  scope=mc23_13p6TeV
[2026-05-27 17:35:36]  status=None
[2026-05-27 17:35:36]  status_code=0
[2026-05-27 17:35:36]  storage_token=
[2026-05-27 17:35:36]  surl=/tmp/job_11657785/atlas/pilot/slots/0/PanDA_Pilot-7154141267/log.49545126._018070.job.log.tgz.1
[2026-05-27 17:35:36]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/df/07/log.49545126._018070.job.log.tgz.1
[2026-05-27 17:35:36]  workdir=None
[2026-05-27 17:35:36] ]
[2026-05-27 17:35:36] 2026-05-27 15:34:33,495 | INFO     | transferring file log.49545126._018070.job.log.tgz.1 from /tmp/job_11657785/atlas/pilot/slots/0/PanDA_Pilot-7154141267/log.49545126._018070.job.log.tgz.1 to /tmp/j
[2026-05-27 17:35:36] 2026-05-27 15:34:33,495 | INFO     | executing command: /usr/bin/env mv /tmp/job_11657785/atlas/pilot/slots/0/PanDA_Pilot-7154141267/log.49545126._018070.job.log.tgz.1 /tmp/job_11657785/atlas/pilot/sl
[2026-05-27 17:35:36] 2026-05-27 15:34:33,504 | INFO     | adding to output.list: log.49545126._018070.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/df/07/log.49545126._018070.job.log.tg
[2026-05-27 17:35:36] 2026-05-27 15:34:33,505 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-27 17:35:36] 2026-05-27 15:34:33,505 | INFO     | summary of transferred files:
[2026-05-27 17:35:36] 2026-05-27 15:34:33,505 | INFO     |  -- lfn=log.49545126._018070.job.log.tgz.1, status_code=0, status=transferred
[2026-05-27 17:35:36] 2026-05-27 15:34:33,505 | INFO     | stage-out finished correctly
[2026-05-27 17:35:36] 2026-05-27 15:34:34,177 | INFO     | PID=24569 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-27 17:35:36] 2026-05-27 15:34:34,177 | INFO     | .. there are 5 such processes running
[2026-05-27 17:35:36] 2026-05-27 15:34:34,653 | INFO     | monitor loop #265: job 0:7154141267 is in state 'finished'
[2026-05-27 17:35:36] 2026-05-27 15:34:34,653 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-27 17:35:36] 2026-05-27 15:34:35,965 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-27 17:35:36] 2026-05-27 15:34:37,156 | INFO     | monitor loop #266: job 0:7154141267 is in state 'finished'
[2026-05-27 17:35:36] 2026-05-27 15:34:37,156 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-27 17:35:36] 2026-05-27 15:34:38,959 | INFO     | job 7154141267 has state=finished
[2026-05-27 17:35:36] 2026-05-27 15:34:38,959 | INFO     | preparing for final server update for job 7154141267 in state='finished'
[2026-05-27 17:35:36] 2026-05-27 15:34:38,960 | INFO     | reading metadata from: /tmp/job_11657785/atlas/pilot/slots/0/PanDA_Pilot-7154141267/jobReport.json
[2026-05-27 17:35:36] 2026-05-27 15:34:38,961 | INFO     | added worker_node to metadata from /tmp/job_11657785/atlas/pilot/slots/0/workernode_map.json
[2026-05-27 17:35:36] 2026-05-27 15:34:38,961 | INFO     | this job has now completed (state=finished)
[2026-05-27 17:35:36] 2026-05-27 15:34:38,962 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-27 17:35:36] 2026-05-27 15:34:38,962 | INFO     | log transfer has been attempted: DONE
[2026-05-27 17:35:36] 2026-05-27 15:34:38,962 | INFO     | job 7154141267 has finished - writing final server update
[2026-05-27 17:35:36] 2026-05-27 15:34:38,962 | INFO     | total number of processed events: 400 (read)
[2026-05-27 17:35:36] 2026-05-27 15:34:38,982 | INFO     | using path: /tmp/job_11657785/atlas/pilot/slots/0/PanDA_Pilot-7154141267/memory_monitor_summary.json (trf name=prmon)
[2026-05-27 17:35:36] 2026-05-27 15:34:38,983 | INFO     | extracted standard info from prmon json
[2026-05-27 17:35:36] 2026-05-27 15:34:38,983 | INFO     | extracted standard memory fields from prmon json
[2026-05-27 17:35:36] 2026-05-27 15:34:38,983 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-27 17:35:36] 2026-05-27 15:34:38,983 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-27 17:35:36] 2026-05-27 15:34:38,984 | INFO     | fitting pss+swap vs Time
[2026-05-27 17:35:36] 2026-05-27 15:34:38,984 | INFO     | sum of square deviations: 38744912.5
[2026-05-27 17:35:36] 2026-05-27 15:34:38,984 | INFO     | sum of deviations: -170416462.50000003
[2026-05-27 17:35:36] 2026-05-27 15:34:38,984 | INFO     | mean x (centered): 0.0
[2026-05-27 17:35:36] 2026-05-27 15:34:38,984 | INFO     | mean y: 2597153.78
[2026-05-27 17:35:36] 2026-05-27 15:34:38,984 | INFO     | intersect: 2597153.78
[2026-05-27 17:35:36] 2026-05-27 15:34:38,984 | INFO     | chi2: 0.002087405948724112
[2026-05-27 17:35:36] 2026-05-27 15:34:38,985 | INFO     | current memory leak: -4.40 B/s (using 50 data points, chi2=0.00)
[2026-05-27 17:35:36] 2026-05-27 15:34:38,985 | INFO     | could have reported an average CPU frequency of 2349 MHz (5 samples)
[2026-05-27 17:35:36] 2026-05-27 15:34:38,985 | INFO     | ..............................
[2026-05-27 17:35:36] 2026-05-27 15:34:38,985 | INFO     | . Timing measurements:
[2026-05-27 17:35:36] 2026-05-27 15:34:38,985 | INFO     | . get job = 0 s
[2026-05-27 17:35:36] 2026-05-27 15:34:38,985 | INFO     | . initial setup = 3 s
[2026-05-27 17:35:36] 2026-05-27 15:34:38,985 | INFO     | . payload setup = 5 s
[2026-05-27 17:35:36] 2026-05-27 15:34:38,985 | INFO     | . stage-in = 0 s
[2026-05-27 17:35:36] 2026-05-27 15:34:38,985 | INFO     | . payload execution = 3469 s
[2026-05-27 17:35:36] 2026-05-27 15:34:38,985 | INFO     | . stage-out = 0 s
[2026-05-27 17:35:36] 2026-05-27 15:34:38,985 | INFO     | . log creation = 0 s
[2026-05-27 17:35:36] 2026-05-27 15:34:38,985 | INFO     | ..............................
[2026-05-27 17:35:36] 2026-05-27 15:34:39,050 | INFO     | 
[2026-05-27 17:35:36] 2026-05-27 15:34:39,050 | INFO     | job summary report
[2026-05-27 17:35:36] 2026-05-27 15:34:39,050 | INFO     | --------------------------------------------------
[2026-05-27 17:35:36] 2026-05-27 15:34:39,050 | INFO     | PanDA job id: 7154141267
[2026-05-27 17:35:36] 2026-05-27 15:34:39,050 | INFO     | task id: 49545126
[2026-05-27 17:35:36] 2026-05-27 15:34:39,050 | INFO     | errors: (none)
[2026-05-27 17:35:36] 2026-05-27 15:34:39,050 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | pilot state: finished 
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | transexitcode: 0
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | exeerrorcode: 0
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | exeerrordiag: 
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | exitcode: 0
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | exitmsg: OK
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | cpuconsumptiontime: 25140 s
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | nevents: 400
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | neventsw: 0
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | pid: 20490
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | pgrp: 20490
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | corecount: 8
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | event service: False
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | sizes: {0: 2267776, 11: 2267776, 3478: 2293564, 3479: 2302592, 3481: 2302648, 3484: 2302874}
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | --------------------------------------------------
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | 
[2026-05-27 17:35:36] 2026-05-27 15:34:39,051 | INFO     | executing command: ls -lF /tmp/job_11657785/atlas/pilot/slots/0
[2026-05-27 17:35:36] 2026-05-27 15:34:39,063 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,063 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,063 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,063 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,063 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,063 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,063 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,063 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | job 7154141267 has completed (purged errors)
[2026-05-27 17:35:36] 2026-05-27 15:34:39,064 | INFO     | overall cleanup function is called
[2026-05-27 17:35:36] 2026-05-27 15:34:40,070 | INFO     | --- collectZombieJob: --- 10, [20490]
[2026-05-27 17:35:36] 2026-05-27 15:34:40,071 | INFO     | zombie collector waiting for pid 20490
[2026-05-27 17:35:36] 2026-05-27 15:34:40,071 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-27 17:35:36] 2026-05-27 15:34:40,071 | INFO     | collected zombie processes
[2026-05-27 17:35:36] 2026-05-27 15:34:40,071 | INFO     | will attempt to kill all subprocesses of pid=20490
[2026-05-27 17:35:36] 2026-05-27 15:34:40,186 | INFO     | process IDs to be killed: [20490] (in reverse order)
[2026-05-27 17:35:36] 2026-05-27 15:34:40,233 | WARNING  | found no corresponding commands to process id(s)
[2026-05-27 17:35:36] 2026-05-27 15:34:40,233 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-27 17:35:36] 2026-05-27 15:34:40,238 | INFO     | did not find any defunct processes belonging to 20490
[2026-05-27 17:35:36] 2026-05-27 15:34:40,242 | INFO     | did not find any defunct processes belonging to 20490
[2026-05-27 17:35:36] 2026-05-27 15:34:40,242 | INFO     | Ready for new job
[2026-05-27 17:35:36] 2026-05-27 15:34:40,243 | INFO     | ***************************************
[2026-05-27 17:35:36] 2026-05-27 15:34:40,243 | INFO     | ***  PanDA Pilot version 3.13.1.30  ***
[2026-05-27 17:35:36] 2026-05-27 15:34:40,243 | INFO     | ***************************************
[2026-05-27 17:35:36] 2026-05-27 15:34:40,243 | INFO     | 
[2026-05-27 17:35:36] 2026-05-27 15:34:40,258 | INFO     | architecture information:
[2026-05-27 17:35:36] 2026-05-27 15:34:40,258 | INFO     | executing command: cat /etc/os-release
[2026-05-27 17:35:36] 2026-05-27 15:34:40,265 | INFO     | cat /etc/os-release:
[2026-05-27 17:35:36] NAME="CentOS Linux"
[2026-05-27 17:35:36] VERSION="7 (Core)"
[2026-05-27 17:35:36] ID="centos"
[2026-05-27 17:35:36] ID_LIKE="rhel fedora"
[2026-05-27 17:35:36] VERSION_ID="7"
[2026-05-27 17:35:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-27 17:35:36] ANSI_COLOR="0;31"
[2026-05-27 17:35:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-27 17:35:36] HOME_URL="https://www.centos.org/"
[2026-05-27 17:35:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-27 17:35:36] 
[2026-05-27 17:35:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-27 17:35:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-27 17:35:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-27 17:35:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-27 17:35:36] 
[2026-05-27 17:35:36] 2026-05-27 15:34:40,265 | INFO     | ***************************************
[2026-05-27 17:35:36] 2026-05-27 15:34:40,768 | INFO     | executing command: df -mP /tmp/job_11657785/atlas/pilot/slots/0
[2026-05-27 17:35:36] 2026-05-27 15:34:40,776 | INFO     | sufficient remaining disk space (225550794752 B)
[2026-05-27 17:35:36] 2026-05-27 15:34:40,776 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-27 17:35:36] 2026-05-27 15:34:40,776 | INFO     | current server update state: UPDATING_FINAL
[2026-05-27 17:35:36] 2026-05-27 15:34:40,776 | INFO     | update_server=False
[2026-05-27 17:35:36] 2026-05-27 15:34:40,776 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-27 17:35:36] 2026-05-27 15:34:40,776 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-27 17:35:36] 2026-05-27 15:34:40,776 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-27 17:35:36] 2026-05-27 15:34:40,777 | INFO     | aborting loop
[2026-05-27 17:35:36] 2026-05-27 15:34:41,130 | INFO     | all job control threads have been joined
[2026-05-27 17:35:36] 2026-05-27 15:34:41,307 | INFO     | all payload control threads have been joined
[2026-05-27 17:35:36] 2026-05-27 15:34:41,585 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-27 17:35:36] 2026-05-27 15:34:41,618 | INFO     | all data control threads have been joined
[2026-05-27 17:35:36] 2026-05-27 15:34:41,781 | INFO     | [job] retrieve thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:41,782 | INFO     | [payload] validate_pre thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:41,782 | INFO     | [job] queue monitor thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:41,782 | INFO     | [job] job monitor thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:41,856 | INFO     | [payload] failed_post thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:42,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-27 17:35:36] 2026-05-27 15:34:42,100 | INFO     | [data] copytool_in thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:42,135 | INFO     | [job] control thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:42,313 | INFO     | [payload] control thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:42,464 | INFO     | [payload] execute_payloads thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:42,623 | INFO     | [data] control thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:43,132 | INFO     | [payload] validate_post thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:43,147 | INFO     | [job] validate thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:43,250 | INFO     | [job] create_data_payload thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:43,590 | INFO     | [data] copytool_out thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:46,040 | INFO     | [data] queue_monitor thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:34:51,658 | INFO     | job.realtimelogging is not enabled
[2026-05-27 17:35:36] 2026-05-27 15:34:52,659 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-27 17:35:36] 2026-05-27 15:35:10,424 | INFO     | PID=24569 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-27 17:35:36] 2026-05-27 15:35:10,424 | INFO     | .. there are 4 such processes running
[2026-05-27 17:35:36] 2026-05-27 15:35:10,424 | INFO     | found 0 job(s) in 20 queues
[2026-05-27 17:35:36] 2026-05-27 15:35:10,424 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-27 17:35:36] 2026-05-27 15:35:10,425 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-27 17:35:36] 2026-05-27 15:35:29,017 | INFO     | [monitor] cgroup control has ended
[2026-05-27 17:35:36] 2026-05-27 15:35:31,083 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456066250496)>']
[2026-05-27 17:35:36] 2026-05-27 15:35:31,530 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-27 17:35:36] 2026-05-27 15:35:31,530 | INFO     | [monitor] control thread has ended
[2026-05-27 17:35:36] 2026-05-27 15:35:36,108 | INFO     | all workflow threads have been joined
[2026-05-27 17:35:36] 2026-05-27 15:35:36,108 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-27 17:35:36] 2026-05-27 15:35:36,108 | INFO     | traces error code: 0
[2026-05-27 17:35:36] 2026-05-27 15:35:36,109 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-27 17:35:36] 2026-05-27 15:35:36,175 [wrapper] ==== pilot stdout END ====
[2026-05-27 17:35:36] 2026-05-27 15:35:36,177 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-27 17:35:36] 2026-05-27 15:35:36,179 [wrapper] pilotpid: 24569
[2026-05-27 17:35:36] 2026-05-27 15:35:36,180 [wrapper] Pilot exit status: 0
[2026-05-27 17:35:36] 2026-05-27 15:35:36,185 [wrapper] pandaids: 7154141267
[2026-05-27 17:35:36] 2026-05-27 15:35:36,214 [wrapper] cleanup supervisor_pilot 28580 24570
[2026-05-27 17:35:36] 2026-05-27 15:35:36,216 [wrapper] Test setup, not cleaning
[2026-05-27 17:35:36] 2026-05-27 15:35:36,217 [wrapper] apfmon messages muted
[2026-05-27 17:35:36] 2026-05-27 15:35:36,219 [wrapper] ==== wrapper stdout END ====
[2026-05-27 17:35:36] 2026-05-27 15:35:36,220 [wrapper] ==== wrapper stderr END ====
[2026-05-27 17:35:36]  *** Error codes and diagnostics ***
[2026-05-27 17:35:36]     "exeErrorCode": 0,
[2026-05-27 17:35:36]     "pilotErrorCode": 0,
[2026-05-27 17:35:36]  *** Listing of results directory ***
[2026-05-27 17:35:36] total 445752
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user    709501 May 27 04:21 pilot3.tar.gz
[2026-05-27 17:35:36] -rwx------ 1 mf493845 unix-user     36281 May 27 04:24 runpilot2-wrapper.sh
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user      5631 May 27 04:25 queuedata.json
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user       100 May 27 15:27 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-27 17:35:36] -rwxr-xr-x 1 mf493845 unix-user      7986 May 27 15:27 run_atlas
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user       105 May 27 15:27 job.xml
[2026-05-27 17:35:36] -rw-r--r-- 2 mf493845 unix-user 269522152 May 27 16:36 EVNT.49539704._000716.pool.root.1
[2026-05-27 17:35:36] -rw-r--r-- 2 mf493845 unix-user     15667 May 27 16:36 start_atlas.sh
[2026-05-27 17:35:36] drwxrwx--x 2 mf493845 unix-user       100 May 27 16:36 shared
[2026-05-27 17:35:36] -rw-r--r-- 2 mf493845 unix-user    722750 May 27 16:36 input.tar.gz
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user      6305 May 27 16:36 init_data.xml
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user         0 May 27 16:36 boinc_setup_complete
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user      8192 May 27 16:36 boinc_mmap_file
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user         0 May 27 16:36 boinc_lockfile
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user      2579 May 27 16:36 pandaJob.out
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user    996447 May 27 16:36 agis_schedconf.cvmfs.json
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user         0 May 27 16:36 agis_ddmendpoints.agis.ALL.json
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user   1251485 May 27 16:36 cric_ddmendpoints.json
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user       415 May 27 16:36 workernode_map.json
[2026-05-27 17:35:36] drwx------ 5 mf493845 unix-user       500 May 27 16:36 pilot3
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user 181707258 May 27 17:34 HITS.49545126._018070.pool.root.1
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user        95 May 27 17:34 pilot_heartbeat.json
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user      1015 May 27 17:34 memory_monitor_summary.json
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user    283545 May 27 17:34 log.49545126._018070.job.log.tgz.1
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user      6370 May 27 17:34 heartbeat_new.json
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user      6260 May 27 17:34 heartbeat.json
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user      4906 May 27 17:35 pilotlog.txt
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user    376293 May 27 17:35 log.49545126._018070.job.log.1
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user       357 May 27 17:35 output.list
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user       410 May 27 17:35 runtime_log
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user    675840 May 27 17:35 result.tar.gz
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user      8842 May 27 17:35 runtime_log.err
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user       641 May 27 17:35 55d4a72449e7.diag
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user     21787 May 27 17:35 stderr.txt
[2026-05-27 17:35:36] HITS file was successfully produced:
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user 181707258 May 27 17:34 shared/HITS.pool.root.1
[2026-05-27 17:35:36]  *** Contents of shared directory: ***
[2026-05-27 17:35:36] total 442044
[2026-05-27 17:35:36] -rw-r--r-- 2 mf493845 unix-user 269522152 May 27 16:36 ATLAS.root_0
[2026-05-27 17:35:36] -rw-r--r-- 2 mf493845 unix-user     15667 May 27 16:36 start_atlas.sh
[2026-05-27 17:35:36] -rw-r--r-- 2 mf493845 unix-user    722750 May 27 16:36 input.tar.gz
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user 181707258 May 27 17:34 HITS.pool.root.1
[2026-05-27 17:35:36] -rw------- 1 mf493845 unix-user    675840 May 27 17:35 result.tar.gz
17:35:38 (16415): run_atlas exited; CPU time 25203.651588
17:35:38 (16415): called boinc_finish(0)

</stderr_txt>
]]>

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