Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:50:05 (3993625): wrapper (7.7.26015): starting
15:50:05 (3993625): wrapper: running run_atlas (--nthreads 4)
[2026-05-27 15:50:05] Arguments: --nthreads 4
[2026-05-27 15:50:05] Threads: 4
[2026-05-27 15:50:05] Checking for CVMFS
[2026-05-27 15:50:05] No cvmfs_config command found, will try listing directly
[2026-05-27 15:50:05] CVMFS is ok
[2026-05-27 15:50:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-27 15:50:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-27 15:50:05] Further information can be found at the LHC@home message board.
[2026-05-27 15:50:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-27 15:50:05] Checking for apptainer binary...
[2026-05-27 15:50:05] which: no apptainer in ((null))
[2026-05-27 15:50:05] apptainer is not installed, using version from CVMFS
[2026-05-27 15:50:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-27 15:50:05] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot32/slots/1/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut01.grid.cesnet.cz
[2026-05-27 15:50:05] apptainer works
[2026-05-27 15:50:05] Set ATHENA_PROC_NUMBER=4
[2026-05-27 15:50:05] Set ATHENA_CORE_NUMBER=4
[2026-05-27 15:50:05] Starting ATLAS job with PandaID=7154461339
[2026-05-27 15:50:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot32/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-27 18:22:41]  *** The last 200 lines of the pilot log: ***
[2026-05-27 18:22:41] 2026-05-27 16:22:00,587 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-27 18:22:41] 2026-05-27 16:22:01,914 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-27 18:22:41] 2026-05-27 16:22:02,065 | INFO     | job 7154461339 has state=finished
[2026-05-27 18:22:41] 2026-05-27 16:22:02,065 | INFO     | preparing for final server update for job 7154461339 in state='finished'
[2026-05-27 18:22:41] 2026-05-27 16:22:02,066 | INFO     | reading metadata from: /var/lib/boinc/var/slot32/slots/1/PanDA_Pilot-7154461339/jobReport.json
[2026-05-27 18:22:41] 2026-05-27 16:22:02,069 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot32/slots/1/workernode_map.json
[2026-05-27 18:22:41] 2026-05-27 16:22:02,069 | INFO     | this job has now completed (state=finished)
[2026-05-27 18:22:41] 2026-05-27 16:22:02,069 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-27 18:22:41] 2026-05-27 16:22:02,069 | INFO     | log transfer has been attempted: DONE
[2026-05-27 18:22:41] 2026-05-27 16:22:02,069 | INFO     | job 7154461339 has finished - writing final server update
[2026-05-27 18:22:41] 2026-05-27 16:22:02,070 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_1219202/.job.ad'
[2026-05-27 18:22:41] 2026-05-27 16:22:02,070 | INFO     | total number of processed events: 400 (read)
[2026-05-27 18:22:41] 2026-05-27 16:22:02,082 | INFO     | using path: /var/lib/boinc/var/slot32/slots/1/PanDA_Pilot-7154461339/memory_monitor_summary.json (trf name=prmon)
[2026-05-27 18:22:41] 2026-05-27 16:22:02,083 | INFO     | extracted standard info from prmon json
[2026-05-27 18:22:41] 2026-05-27 16:22:02,083 | INFO     | extracted standard memory fields from prmon json
[2026-05-27 18:22:41] 2026-05-27 16:22:02,083 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-27 18:22:41] 2026-05-27 16:22:02,083 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-27 18:22:41] 2026-05-27 16:22:02,086 | INFO     | fitting pss+swap vs Time
[2026-05-27 18:22:41] 2026-05-27 16:22:02,087 | INFO     | sum of square deviations: 1025693650.0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,088 | INFO     | sum of deviations: 6117645225.999999
[2026-05-27 18:22:41] 2026-05-27 16:22:02,088 | INFO     | mean x (centered): 0.0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,088 | INFO     | mean y: 2350350.248322148
[2026-05-27 18:22:41] 2026-05-27 16:22:02,088 | INFO     | intersect: 2350350.248322148
[2026-05-27 18:22:41] 2026-05-27 16:22:02,088 | INFO     | chi2: 1.3932880735783268
[2026-05-27 18:22:41] 2026-05-27 16:22:02,089 | INFO     | sum of square deviations: 925859220.0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,089 | INFO     | sum of deviations: 6004240583.499998
[2026-05-27 18:22:41] 2026-05-27 16:22:02,089 | INFO     | mean x (centered): 0.0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,089 | INFO     | mean y: 2350176.923611111
[2026-05-27 18:22:41] 2026-05-27 16:22:02,090 | INFO     | intersect: 2350176.923611111
[2026-05-27 18:22:41] 2026-05-27 16:22:02,090 | INFO     | chi2: 1.3945642981336566
[2026-05-27 18:22:41] 2026-05-27 16:22:02,090 | INFO     | current chi2=1.3945642981336566 (change=-0.09159803916587342 %)
[2026-05-27 18:22:41] 2026-05-27 16:22:02,090 | INFO     | right removable region: 143
[2026-05-27 18:22:41] 2026-05-27 16:22:02,090 | INFO     | sum of square deviations: 925859220.0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,091 | INFO     | sum of deviations: -12838818260.499998
[2026-05-27 18:22:41] 2026-05-27 16:22:02,091 | INFO     | mean x (centered): 0.0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,091 | INFO     | mean y: 2378793.840277778
[2026-05-27 18:22:41] 2026-05-27 16:22:02,091 | INFO     | intersect: 2378793.840277778
[2026-05-27 18:22:41] 2026-05-27 16:22:02,092 | INFO     | chi2: 0.045989824128265445
[2026-05-27 18:22:41] 2026-05-27 16:22:02,092 | INFO     | current chi2=0.045989824128265445 (change=96.69918769848135 %)
[2026-05-27 18:22:41] 2026-05-27 16:22:02,092 | INFO     | sum of square deviations: 832722590.0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,093 | INFO     | sum of deviations: -10889835960.999996
[2026-05-27 18:22:41] 2026-05-27 16:22:02,093 | INFO     | mean x (centered): 0.0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,093 | INFO     | mean y: 2375567.294964029
[2026-05-27 18:22:41] 2026-05-27 16:22:02,093 | INFO     | intersect: 2375567.294964029
[2026-05-27 18:22:41] 2026-05-27 16:22:02,093 | INFO     | chi2: 0.0419763556056246
[2026-05-27 18:22:41] 2026-05-27 16:22:02,093 | INFO     | current chi2=0.0419763556056246 (change=8.726862080288235 %)
[2026-05-27 18:22:41] 2026-05-27 16:22:02,093 | INFO     | left removable region: 10
[2026-05-27 18:22:41] 2026-05-27 16:22:02,094 | INFO     | sum of square deviations: 729472282.0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,094 | INFO     | sum of deviations: -10375197566.000002
[2026-05-27 18:22:41] 2026-05-27 16:22:02,094 | INFO     | mean x (centered): 0.0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,094 | INFO     | mean y: 2376479.984962406
[2026-05-27 18:22:41] 2026-05-27 16:22:02,094 | INFO     | intersect: 2376479.984962406
[2026-05-27 18:22:41] 2026-05-27 16:22:02,095 | INFO     | chi2: 0.04060638069296129
[2026-05-27 18:22:41] 2026-05-27 16:22:02,095 | INFO     | current memory leak: -14.22 B/s (using 133 data points, chi2=0.04)
[2026-05-27 18:22:41] 2026-05-27 16:22:02,095 | INFO     | could have reported an average CPU frequency of 2577 MHz (9 samples)
[2026-05-27 18:22:41] 2026-05-27 16:22:02,096 | INFO     | ..............................
[2026-05-27 18:22:41] 2026-05-27 16:22:02,096 | INFO     | . Timing measurements:
[2026-05-27 18:22:41] 2026-05-27 16:22:02,096 | INFO     | . get job = 0 s
[2026-05-27 18:22:41] 2026-05-27 16:22:02,096 | INFO     | . initial setup = 5 s
[2026-05-27 18:22:41] 2026-05-27 16:22:02,096 | INFO     | . payload setup = 9 s
[2026-05-27 18:22:41] 2026-05-27 16:22:02,096 | INFO     | . stage-in = 0 s
[2026-05-27 18:22:41] 2026-05-27 16:22:02,097 | INFO     | . payload execution = 9072 s
[2026-05-27 18:22:41] 2026-05-27 16:22:02,097 | INFO     | . stage-out = 0 s
[2026-05-27 18:22:41] 2026-05-27 16:22:02,097 | INFO     | . log creation = 0 s
[2026-05-27 18:22:41] 2026-05-27 16:22:02,097 | INFO     | ..............................
[2026-05-27 18:22:41] 2026-05-27 16:22:02,189 | INFO     | 
[2026-05-27 18:22:41] 2026-05-27 16:22:02,189 | INFO     | job summary report
[2026-05-27 18:22:41] 2026-05-27 16:22:02,189 | INFO     | --------------------------------------------------
[2026-05-27 18:22:41] 2026-05-27 16:22:02,189 | INFO     | PanDA job id: 7154461339
[2026-05-27 18:22:41] 2026-05-27 16:22:02,189 | INFO     | task id: 49545126
[2026-05-27 18:22:41] 2026-05-27 16:22:02,189 | INFO     | errors: (none)
[2026-05-27 18:22:41] 2026-05-27 16:22:02,189 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-27 18:22:41] 2026-05-27 16:22:02,189 | INFO     | pilot state: finished 
[2026-05-27 18:22:41] 2026-05-27 16:22:02,189 | INFO     | transexitcode: 0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | exeerrorcode: 0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | exeerrordiag: 
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | exitcode: 0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | exitmsg: OK
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | cpuconsumptiontime: 34782 s
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | nevents: 400
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | neventsw: 0
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | pid: 4002548
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | pgrp: 4002548
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | corecount: 4
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | event service: False
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | sizes: {0: 2265852, 1: 2267681, 11: 2267681, 9086: 2295927, 9087: 2295926, 9088: 2305002, 9090: 2305444}
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | --------------------------------------------------
[2026-05-27 18:22:41] 2026-05-27 16:22:02,190 | INFO     | 
[2026-05-27 18:22:41] 2026-05-27 16:22:02,191 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot32/slots/1
[2026-05-27 18:22:41] 2026-05-27 16:22:02,214 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,215 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,215 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,215 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,215 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,215 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,215 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,215 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,216 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,216 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,216 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,216 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,216 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,216 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,216 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,216 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,216 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,216 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-27 18:22:41] 2026-05-27 16:22:02,216 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,217 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-27 18:22:41] 2026-05-27 16:22:02,217 | INFO     | job 7154461339 has completed (purged errors)
[2026-05-27 18:22:41] 2026-05-27 16:22:02,217 | INFO     | overall cleanup function is called
[2026-05-27 18:22:41] 2026-05-27 16:22:03,221 | INFO     | --- collectZombieJob: --- 10, [4002548]
[2026-05-27 18:22:41] 2026-05-27 16:22:03,221 | INFO     | zombie collector waiting for pid 4002548
[2026-05-27 18:22:41] 2026-05-27 16:22:03,221 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-27 18:22:41] 2026-05-27 16:22:03,222 | INFO     | collected zombie processes
[2026-05-27 18:22:41] 2026-05-27 16:22:03,222 | INFO     | will attempt to kill all subprocesses of pid=4002548
[2026-05-27 18:22:41] 2026-05-27 16:22:03,517 | INFO     | process IDs to be killed: [4002548] (in reverse order)
[2026-05-27 18:22:41] 2026-05-27 16:22:03,642 | WARNING  | found no corresponding commands to process id(s)
[2026-05-27 18:22:41] 2026-05-27 16:22:03,642 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-27 18:22:41] 2026-05-27 16:22:03,655 | INFO     | did not find any defunct processes belonging to 4002548
[2026-05-27 18:22:41] 2026-05-27 16:22:03,667 | INFO     | did not find any defunct processes belonging to 4002548
[2026-05-27 18:22:41] 2026-05-27 16:22:03,667 | INFO     | Ready for new job
[2026-05-27 18:22:41] 2026-05-27 16:22:03,669 | INFO     | ***************************************
[2026-05-27 18:22:41] 2026-05-27 16:22:03,669 | INFO     | ***  PanDA Pilot version 3.13.1.30  ***
[2026-05-27 18:22:41] 2026-05-27 16:22:03,669 | INFO     | ***************************************
[2026-05-27 18:22:41] 2026-05-27 16:22:03,669 | INFO     | 
[2026-05-27 18:22:41] 2026-05-27 16:22:03,673 | INFO     | architecture information:
[2026-05-27 18:22:41] 2026-05-27 16:22:03,674 | INFO     | executing command: cat /etc/os-release
[2026-05-27 18:22:41] 2026-05-27 16:22:03,690 | INFO     | cat /etc/os-release:
[2026-05-27 18:22:41] NAME="CentOS Linux"
[2026-05-27 18:22:41] VERSION="7 (Core)"
[2026-05-27 18:22:41] ID="centos"
[2026-05-27 18:22:41] ID_LIKE="rhel fedora"
[2026-05-27 18:22:41] VERSION_ID="7"
[2026-05-27 18:22:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-27 18:22:41] ANSI_COLOR="0;31"
[2026-05-27 18:22:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-27 18:22:41] HOME_URL="https://www.centos.org/"
[2026-05-27 18:22:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-27 18:22:41] 
[2026-05-27 18:22:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-27 18:22:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-27 18:22:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-27 18:22:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-27 18:22:41] 
[2026-05-27 18:22:41] 2026-05-27 16:22:03,691 | INFO     | ***************************************
[2026-05-27 18:22:41] 2026-05-27 16:22:04,193 | INFO     | executing command: df -mP /var/lib/boinc/var/slot32/slots/1
[2026-05-27 18:22:41] 2026-05-27 16:22:04,210 | INFO     | sufficient remaining disk space (64493715456 B)
[2026-05-27 18:22:41] 2026-05-27 16:22:04,210 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-27 18:22:41] 2026-05-27 16:22:04,211 | INFO     | current server update state: UPDATING_FINAL
[2026-05-27 18:22:41] 2026-05-27 16:22:04,211 | INFO     | update_server=False
[2026-05-27 18:22:41] 2026-05-27 16:22:04,211 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-27 18:22:41] 2026-05-27 16:22:04,211 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-27 18:22:41] 2026-05-27 16:22:04,211 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-27 18:22:41] 2026-05-27 16:22:04,212 | INFO     | aborting loop
[2026-05-27 18:22:41] 2026-05-27 16:22:04,254 | INFO     | all data control threads have been joined
[2026-05-27 18:22:41] 2026-05-27 16:22:05,065 | INFO     | all job control threads have been joined
[2026-05-27 18:22:41] 2026-05-27 16:22:05,216 | INFO     | [job] retrieve thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:05,217 | INFO     | [job] job monitor thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:05,259 | INFO     | [data] control thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:05,346 | INFO     | [job] validate thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:05,485 | INFO     | [payload] execute_payloads thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:05,675 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-27 18:22:41] 2026-05-27 16:22:05,675 | INFO     | all payload control threads have been joined
[2026-05-27 18:22:41] 2026-05-27 16:22:05,828 | INFO     | [payload] validate_pre thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:05,856 | INFO     | [job] create_data_payload thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:05,905 | INFO     | [payload] failed_post thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:06,070 | INFO     | [job] control thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:06,189 | INFO     | [data] copytool_in thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:06,525 | INFO     | [payload] validate_post thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:06,680 | INFO     | [payload] control thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:07,198 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-27 18:22:41] 2026-05-27 16:22:07,681 | INFO     | [data] copytool_out thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:08,203 | INFO     | [job] queue monitor thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:08,216 | INFO     | [data] queue_monitor thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:15,064 | INFO     | job.realtimelogging is not enabled
[2026-05-27 18:22:41] 2026-05-27 16:22:16,070 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-27 18:22:41] 2026-05-27 16:22:34,980 | INFO     | [monitor] cgroup control has ended
[2026-05-27 18:22:41] 2026-05-27 16:22:35,188 | INFO     | PID=3997744 has CPU usage=5.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-27 18:22:41] 2026-05-27 16:22:35,188 | INFO     | .. there are 10 such processes running
[2026-05-27 18:22:41] 2026-05-27 16:22:35,189 | INFO     | found 0 job(s) in 20 queues
[2026-05-27 18:22:41] 2026-05-27 16:22:35,189 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-27 18:22:41] 2026-05-27 16:22:35,189 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-27 18:22:41] 2026-05-27 16:22:35,779 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23165879056192)>', '<ExcThread(monitor, started 23165577197312)>']
[2026-05-27 18:22:41] 2026-05-27 16:22:36,194 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-27 18:22:41] 2026-05-27 16:22:36,194 | INFO     | [monitor] control thread has ended
[2026-05-27 18:22:41] 2026-05-27 16:22:40,801 | INFO     | all workflow threads have been joined
[2026-05-27 18:22:41] 2026-05-27 16:22:40,802 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-27 18:22:41] 2026-05-27 16:22:40,802 | INFO     | traces error code: 0
[2026-05-27 18:22:41] 2026-05-27 16:22:40,802 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-27 18:22:41] 2026-05-27 16:22:40,979 [wrapper] ==== pilot stdout END ====
[2026-05-27 18:22:41] 2026-05-27 16:22:40,981 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-27 18:22:41] 2026-05-27 16:22:40,984 [wrapper] pilotpid: 3997744
[2026-05-27 18:22:41] 2026-05-27 16:22:40,986 [wrapper] Pilot exit status: 0
[2026-05-27 18:22:41] 2026-05-27 16:22:40,996 [wrapper] pandaids: 7154461339
[2026-05-27 18:22:41] 2026-05-27 16:22:41,069 [wrapper] cleanup supervisor_pilot   15783 3997745
[2026-05-27 18:22:41] 2026-05-27 16:22:41,072 [wrapper] Test setup, not cleaning
[2026-05-27 18:22:41] 2026-05-27 16:22:41,075 [wrapper] apfmon messages muted
[2026-05-27 18:22:41] 2026-05-27 16:22:41,078 [wrapper] ==== wrapper stdout END ====
[2026-05-27 18:22:41] 2026-05-27 16:22:41,080 [wrapper] ==== wrapper stderr END ====
[2026-05-27 18:22:41]  *** Error codes and diagnostics ***
[2026-05-27 18:22:41]     "exeErrorCode": 0,
[2026-05-27 18:22:41]     "pilotErrorCode": 0,
[2026-05-27 18:22:41]  *** Listing of results directory ***
[2026-05-27 18:22:41] total 431404
[2026-05-27 18:22:41] -rwx------. 1 boinc boinc     36281 May 27 12:28 runpilot2-wrapper.sh
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc      5631 May 27 12:29 queuedata.json
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc    709501 May 27 12:29 pilot3.tar.gz
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc       100 May 27 15:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-27 18:22:41] -rwxr-xr-x. 1 boinc boinc      7986 May 27 15:50 run_atlas
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc       105 May 27 15:50 job.xml
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc      6482 May 27 15:50 init_data.xml
[2026-05-27 18:22:41] -rw-r--r--. 2 boinc boinc 267130124 May 27 15:50 EVNT.49539704._000950.pool.root.1
[2026-05-27 18:22:41] -rw-r--r--. 2 boinc boinc     15667 May 27 15:50 start_atlas.sh
[2026-05-27 18:22:41] drwxrwx--x. 2 boinc boinc      4096 May 27 15:50 shared
[2026-05-27 18:22:41] -rw-r--r--. 2 boinc boinc    722754 May 27 15:50 input.tar.gz
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc         0 May 27 15:50 boinc_lockfile
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc      2571 May 27 15:50 pandaJob.out
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc    996455 May 27 15:50 agis_schedconf.cvmfs.json
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc         0 May 27 15:50 agis_ddmendpoints.agis.ALL.json
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc   1251485 May 27 15:50 cric_ddmendpoints.json
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc       452 May 27 15:50 workernode_map.json
[2026-05-27 18:22:41] drwx------. 5 boinc boinc      4096 May 27 15:50 pilot3
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc 168355180 May 27 18:21 HITS.49545126._023999.pool.root.1
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc       487 May 27 18:21 boinc_task_state.xml
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc        95 May 27 18:21 pilot_heartbeat.json
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc      1034 May 27 18:21 memory_monitor_summary.json
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc    292860 May 27 18:21 log.49545126._023999.job.log.tgz.1
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc      6468 May 27 18:22 heartbeat_new.json
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc      6359 May 27 18:22 heartbeat.json
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc      8192 May 27 18:22 boinc_mmap_file
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc        27 May 27 18:22 wrapper_checkpoint.txt
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc      4904 May 27 18:22 pilotlog.txt
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc    878102 May 27 18:22 log.49545126._023999.job.log.1
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc       357 May 27 18:22 output.list
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc       410 May 27 18:22 runtime_log
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc   1187840 May 27 18:22 result.tar.gz
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc      8827 May 27 18:22 runtime_log.err
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc       662 May 27 18:22 c739733811a8.diag
[2026-05-27 18:22:41] -rw-r--r--. 1 boinc boinc     21076 May 27 18:22 stderr.txt
[2026-05-27 18:22:41] HITS file was successfully produced:
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc 168355180 May 27 18:21 shared/HITS.pool.root.1
[2026-05-27 18:22:41]  *** Contents of shared directory: ***
[2026-05-27 18:22:41] total 427176
[2026-05-27 18:22:41] -rw-r--r--. 2 boinc boinc 267130124 May 27 15:50 ATLAS.root_0
[2026-05-27 18:22:41] -rw-r--r--. 2 boinc boinc     15667 May 27 15:50 start_atlas.sh
[2026-05-27 18:22:41] -rw-r--r--. 2 boinc boinc    722754 May 27 15:50 input.tar.gz
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc 168355180 May 27 18:21 HITS.pool.root.1
[2026-05-27 18:22:41] -rw-------. 1 boinc boinc   1187840 May 27 18:22 result.tar.gz
18:22:43 (3993625): run_atlas exited; CPU time 35089.134348
18:22:43 (3993625): called boinc_finish(0)

</stderr_txt>
]]>

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