Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:15:33 (2062830): wrapper (7.7.26015): starting
12:15:33 (2062830): wrapper: running run_atlas (--nthreads 12)
[2026-05-27 12:15:33] Arguments: --nthreads 12
[2026-05-27 12:15:33] Threads: 12
[2026-05-27 12:15:33] Checking for CVMFS
[2026-05-27 12:15:33] No cvmfs_config command found, will try listing directly
[2026-05-27 12:15:33] CVMFS is ok
[2026-05-27 12:15:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-27 12:15:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-27 12:15:33] Further information can be found at the LHC@home message board.
[2026-05-27 12:15:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-27 12:15:33] Checking for apptainer binary...
[2026-05-27 12:15:33] which: no apptainer in ((null))
[2026-05-27 12:15:33] apptainer is not installed, using version from CVMFS
[2026-05-27 12:15:33] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-27 12:15:33] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot168/slots/2/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut18.grid.cesnet.cz
[2026-05-27 12:15:33] apptainer works
[2026-05-27 12:15:33] Set ATHENA_PROC_NUMBER=12
[2026-05-27 12:15:33] Set ATHENA_CORE_NUMBER=12
[2026-05-27 12:15:33] Starting ATLAS job with PandaID=7154279105
[2026-05-27 12:15:33] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot168/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-27 12:35:48]  *** The last 200 lines of the pilot log: ***
[2026-05-27 12:35:48]  filesize=321426
[2026-05-27 12:35:48]  filetype=log
[2026-05-27 12:35:48]  guid=fb59ffe5-9578-4abf-bc75-079788787f1a
[2026-05-27 12:35:48]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-27 12:35:48]  is_altstaged=None
[2026-05-27 12:35:48]  is_tar=False
[2026-05-27 12:35:48]  lfn=log.49545126._021494.job.log.tgz.1
[2026-05-27 12:35:48]  mtime=0
[2026-05-27 12:35:48]  protocol_id=None
[2026-05-27 12:35:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-27 12:35:48]  replicas=None
[2026-05-27 12:35:48]  scope=mc23_13p6TeV
[2026-05-27 12:35:48]  status=None
[2026-05-27 12:35:48]  status_code=0
[2026-05-27 12:35:48]  storage_token=
[2026-05-27 12:35:48]  surl=/var/lib/boinc/var/slot168/slots/2/PanDA_Pilot-7154279105/log.49545126._021494.job.log.tgz.1
[2026-05-27 12:35:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/0f/log.49545126._021494.job.log.tgz.1
[2026-05-27 12:35:48]  workdir=None
[2026-05-27 12:35:48] ]
[2026-05-27 12:35:48] 2026-05-27 10:35:08,635 | INFO     | transferring file log.49545126._021494.job.log.tgz.1 from /var/lib/boinc/var/slot168/slots/2/PanDA_Pilot-7154279105/log.49545126._021494.job.log.tgz.1 to /var/lib/
[2026-05-27 12:35:48] 2026-05-27 10:35:08,635 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/var/slot168/slots/2/PanDA_Pilot-7154279105/log.49545126._021494.job.log.tgz.1 /var/lib/boinc/var/slot168/slots/2/
[2026-05-27 12:35:48] 2026-05-27 10:35:08,649 | INFO     | adding to output.list: log.49545126._021494.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/a9/0f/log.49545126._021494.job.log.tg
[2026-05-27 12:35:48] 2026-05-27 10:35:08,649 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-27 12:35:48] 2026-05-27 10:35:08,649 | INFO     | summary of transferred files:
[2026-05-27 12:35:48] 2026-05-27 10:35:08,649 | INFO     |  -- lfn=log.49545126._021494.job.log.tgz.1, status_code=0, status=transferred
[2026-05-27 12:35:48] 2026-05-27 10:35:08,649 | INFO     | stage-out finished correctly
[2026-05-27 12:35:48] 2026-05-27 10:35:09,092 | INFO     | monitor loop #93: job 0:7154279105 is in state 'finished'
[2026-05-27 12:35:48] 2026-05-27 10:35:09,092 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-27 12:35:48] 2026-05-27 10:35:09,320 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-27 12:35:48] 2026-05-27 10:35:09,350 | INFO     | job 7154279105 has state=finished
[2026-05-27 12:35:48] 2026-05-27 10:35:09,350 | INFO     | preparing for final server update for job 7154279105 in state='finished'
[2026-05-27 12:35:48] 2026-05-27 10:35:09,350 | INFO     | reading metadata from: /var/lib/boinc/var/slot168/slots/2/PanDA_Pilot-7154279105/jobReport.json
[2026-05-27 12:35:48] 2026-05-27 10:35:09,352 | INFO     | added worker_node to metadata from /var/lib/boinc/var/slot168/slots/2/workernode_map.json
[2026-05-27 12:35:48] 2026-05-27 10:35:09,352 | INFO     | this job has now completed (state=finished)
[2026-05-27 12:35:48] 2026-05-27 10:35:09,352 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-27 12:35:48] 2026-05-27 10:35:09,352 | INFO     | log transfer has been attempted: DONE
[2026-05-27 12:35:48] 2026-05-27 10:35:09,352 | INFO     | job 7154279105 has finished - writing final server update
[2026-05-27 12:35:48] 2026-05-27 10:35:09,352 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_3304948/.job.ad'
[2026-05-27 12:35:48] 2026-05-27 10:35:09,352 | INFO     | total number of processed events: 400 (read)
[2026-05-27 12:35:48] 2026-05-27 10:35:09,362 | INFO     | using path: /var/lib/boinc/var/slot168/slots/2/PanDA_Pilot-7154279105/memory_monitor_summary.json (trf name=prmon)
[2026-05-27 12:35:48] 2026-05-27 10:35:09,362 | INFO     | extracted standard info from prmon json
[2026-05-27 12:35:48] 2026-05-27 10:35:09,363 | INFO     | extracted standard memory fields from prmon json
[2026-05-27 12:35:48] 2026-05-27 10:35:09,363 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-27 12:35:48] 2026-05-27 10:35:09,363 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-27 12:35:48] 2026-05-27 10:35:09,363 | INFO     | fitting pss+swap vs Time
[2026-05-27 12:35:48] 2026-05-27 10:35:09,363 | INFO     | sum of square deviations: 532103.0
[2026-05-27 12:35:48] 2026-05-27 10:35:09,363 | INFO     | sum of deviations: -16195805.0
[2026-05-27 12:35:48] 2026-05-27 10:35:09,363 | INFO     | mean x (centered): 0.0
[2026-05-27 12:35:48] 2026-05-27 10:35:09,363 | INFO     | mean y: 2828747.0
[2026-05-27 12:35:48] 2026-05-27 10:35:09,363 | INFO     | intersect: 2828747.0
[2026-05-27 12:35:48] 2026-05-27 10:35:09,363 | INFO     | chi2: 9.856944012420936e-05
[2026-05-27 12:35:48] 2026-05-27 10:35:09,363 | INFO     | current memory leak: -30.44 B/s (using 12 data points, chi2=0.00)
[2026-05-27 12:35:48] 2026-05-27 10:35:09,364 | INFO     | could have reported an average CPU frequency of 3691 MHz (4 samples)
[2026-05-27 12:35:48] 2026-05-27 10:35:09,364 | INFO     | ..............................
[2026-05-27 12:35:48] 2026-05-27 10:35:09,364 | INFO     | . Timing measurements:
[2026-05-27 12:35:48] 2026-05-27 10:35:09,364 | INFO     | . get job = 0 s
[2026-05-27 12:35:48] 2026-05-27 10:35:09,364 | INFO     | . initial setup = 3 s
[2026-05-27 12:35:48] 2026-05-27 10:35:09,364 | INFO     | . payload setup = 4 s
[2026-05-27 12:35:48] 2026-05-27 10:35:09,364 | INFO     | . stage-in = 0 s
[2026-05-27 12:35:48] 2026-05-27 10:35:09,364 | INFO     | . payload execution = 1147 s
[2026-05-27 12:35:48] 2026-05-27 10:35:09,364 | INFO     | . stage-out = 0 s
[2026-05-27 12:35:48] 2026-05-27 10:35:09,364 | INFO     | . log creation = 0 s
[2026-05-27 12:35:48] 2026-05-27 10:35:09,364 | INFO     | ..............................
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | 
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | job summary report
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | --------------------------------------------------
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | PanDA job id: 7154279105
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | task id: 49545126
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | errors: (none)
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | pilot state: finished 
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | transexitcode: 0
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | exeerrorcode: 0
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | exeerrordiag: 
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | exitcode: 0
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | exitmsg: OK
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | cpuconsumptiontime: 12118 s
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | nevents: 400
[2026-05-27 12:35:48] 2026-05-27 10:35:09,393 | INFO     | neventsw: 0
[2026-05-27 12:35:48] 2026-05-27 10:35:09,394 | INFO     | pid: 2074356
[2026-05-27 12:35:48] 2026-05-27 10:35:09,394 | INFO     | pgrp: 2074356
[2026-05-27 12:35:48] 2026-05-27 10:35:09,394 | INFO     | corecount: 12
[2026-05-27 12:35:48] 2026-05-27 10:35:09,394 | INFO     | event service: False
[2026-05-27 12:35:48] 2026-05-27 10:35:09,394 | INFO     | sizes: {0: 2267661, 11: 2267661, 1155: 2292268, 1156: 2301290, 1157: 2301540}
[2026-05-27 12:35:48] 2026-05-27 10:35:09,394 | INFO     | --------------------------------------------------
[2026-05-27 12:35:48] 2026-05-27 10:35:09,394 | INFO     | 
[2026-05-27 12:35:48] 2026-05-27 10:35:09,394 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot168/slots/2
[2026-05-27 12:35:48] 2026-05-27 10:35:09,411 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,411 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | job 7154279105 has completed (purged errors)
[2026-05-27 12:35:48] 2026-05-27 10:35:09,412 | INFO     | overall cleanup function is called
[2026-05-27 12:35:48] 2026-05-27 10:35:10,419 | INFO     | --- collectZombieJob: --- 10, [2074356]
[2026-05-27 12:35:48] 2026-05-27 10:35:10,420 | INFO     | zombie collector waiting for pid 2074356
[2026-05-27 12:35:48] 2026-05-27 10:35:10,420 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-27 12:35:48] 2026-05-27 10:35:10,420 | INFO     | collected zombie processes
[2026-05-27 12:35:48] 2026-05-27 10:35:10,420 | INFO     | will attempt to kill all subprocesses of pid=2074356
[2026-05-27 12:35:48] 2026-05-27 10:35:10,591 | INFO     | process IDs to be killed: [2074356] (in reverse order)
[2026-05-27 12:35:48] 2026-05-27 10:35:10,692 | WARNING  | found no corresponding commands to process id(s)
[2026-05-27 12:35:48] 2026-05-27 10:35:10,692 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-27 12:35:48] 2026-05-27 10:35:10,712 | INFO     | did not find any defunct processes belonging to 2074356
[2026-05-27 12:35:48] 2026-05-27 10:35:10,724 | INFO     | did not find any defunct processes belonging to 2074356
[2026-05-27 12:35:48] 2026-05-27 10:35:10,724 | INFO     | Ready for new job
[2026-05-27 12:35:48] 2026-05-27 10:35:10,725 | INFO     | ***************************************
[2026-05-27 12:35:48] 2026-05-27 10:35:10,725 | INFO     | ***  PanDA Pilot version 3.13.1.30  ***
[2026-05-27 12:35:48] 2026-05-27 10:35:10,725 | INFO     | ***************************************
[2026-05-27 12:35:48] 2026-05-27 10:35:10,725 | INFO     | 
[2026-05-27 12:35:48] 2026-05-27 10:35:10,729 | INFO     | architecture information:
[2026-05-27 12:35:48] 2026-05-27 10:35:10,729 | INFO     | executing command: cat /etc/os-release
[2026-05-27 12:35:48] 2026-05-27 10:35:10,741 | INFO     | cat /etc/os-release:
[2026-05-27 12:35:48] NAME="CentOS Linux"
[2026-05-27 12:35:48] VERSION="7 (Core)"
[2026-05-27 12:35:48] ID="centos"
[2026-05-27 12:35:48] ID_LIKE="rhel fedora"
[2026-05-27 12:35:48] VERSION_ID="7"
[2026-05-27 12:35:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-27 12:35:48] ANSI_COLOR="0;31"
[2026-05-27 12:35:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-27 12:35:48] HOME_URL="https://www.centos.org/"
[2026-05-27 12:35:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-27 12:35:48] 
[2026-05-27 12:35:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-27 12:35:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-27 12:35:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-27 12:35:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-27 12:35:48] 
[2026-05-27 12:35:48] 2026-05-27 10:35:10,741 | INFO     | ***************************************
[2026-05-27 12:35:48] 2026-05-27 10:35:11,244 | INFO     | executing command: df -mP /var/lib/boinc/var/slot168/slots/2
[2026-05-27 12:35:48] 2026-05-27 10:35:11,254 | INFO     | sufficient remaining disk space (328550318080 B)
[2026-05-27 12:35:48] 2026-05-27 10:35:11,254 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-27 12:35:48] 2026-05-27 10:35:11,255 | INFO     | current server update state: UPDATING_FINAL
[2026-05-27 12:35:48] 2026-05-27 10:35:11,255 | INFO     | update_server=False
[2026-05-27 12:35:48] 2026-05-27 10:35:11,255 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-27 12:35:48] 2026-05-27 10:35:11,255 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-27 12:35:48] 2026-05-27 10:35:11,255 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-27 12:35:48] 2026-05-27 10:35:11,458 | INFO     | all data control threads have been joined
[2026-05-27 12:35:48] 2026-05-27 10:35:11,595 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-27 12:35:48] 2026-05-27 10:35:11,595 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-27 12:35:48] 2026-05-27 10:35:11,595 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-27 12:35:48] 2026-05-27 10:35:11,595 | INFO     | will abort loop
[2026-05-27 12:35:48] 2026-05-27 10:35:11,680 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-27 12:35:48] 2026-05-27 10:35:11,963 | INFO     | all job control threads have been joined
[2026-05-27 12:35:48] 2026-05-27 10:35:12,118 | INFO     | job.realtimelogging is not enabled
[2026-05-27 12:35:48] 2026-05-27 10:35:12,260 | INFO     | [job] retrieve thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:12,261 | INFO     | [job] queue monitor thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:12,296 | INFO     | all payload control threads have been joined
[2026-05-27 12:35:48] 2026-05-27 10:35:12,463 | INFO     | [data] control thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:12,601 | INFO     | [job] job monitor thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:12,738 | INFO     | [job] validate thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:12,754 | INFO     | [payload] execute_payloads thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:12,755 | INFO     | [job] create_data_payload thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:12,839 | INFO     | [payload] validate_pre thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:12,901 | INFO     | [data] copytool_in thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:12,969 | INFO     | [job] control thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:13,102 | INFO     | [payload] validate_post thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:13,123 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:13,302 | INFO     | [payload] control thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:13,499 | INFO     | [payload] failed_post thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:13,686 | INFO     | [data] copytool_out thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:15,262 | INFO     | [data] queue_monitor thread has finished
[2026-05-27 12:35:48] 2026-05-27 10:35:41,692 | INFO     | PID=2067717 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-27 12:35:48] 2026-05-27 10:35:41,693 | INFO     | .. there are 5 such processes running
[2026-05-27 12:35:48] 2026-05-27 10:35:41,693 | INFO     | found 0 job(s) in 20 queues
[2026-05-27 12:35:48] 2026-05-27 10:35:41,693 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-27 12:35:48] 2026-05-27 10:35:41,693 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-27 12:35:48] 2026-05-27 10:35:42,109 | INFO     | [monitor] cgroup control has ended
[2026-05-27 12:35:48] 2026-05-27 10:35:43,115 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22608757409600)>', '<ExcThread(monitor, started 22608524625664)>']
[2026-05-27 12:35:48] 2026-05-27 10:35:43,703 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-27 12:35:48] 2026-05-27 10:35:43,703 | INFO     | [monitor] control thread has ended
[2026-05-27 12:35:48] 2026-05-27 10:35:48,140 | INFO     | all workflow threads have been joined
[2026-05-27 12:35:48] 2026-05-27 10:35:48,140 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-27 12:35:48] 2026-05-27 10:35:48,140 | INFO     | traces error code: 0
[2026-05-27 12:35:48] 2026-05-27 10:35:48,140 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-27 12:35:48] 2026-05-27 10:35:48,212 [wrapper] ==== pilot stdout END ====
[2026-05-27 12:35:48] 2026-05-27 10:35:48,213 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-27 12:35:48] 2026-05-27 10:35:48,215 [wrapper] pilotpid: 2067717
[2026-05-27 12:35:48] 2026-05-27 10:35:48,216 [wrapper] Pilot exit status: 0
[2026-05-27 12:35:48] 2026-05-27 10:35:48,220 [wrapper] pandaids: 7154279105
[2026-05-27 12:35:48] 2026-05-27 10:35:48,285 [wrapper] cleanup supervisor_pilot 2147823 2067718
[2026-05-27 12:35:48] 2026-05-27 10:35:48,287 [wrapper] Test setup, not cleaning
[2026-05-27 12:35:48] 2026-05-27 10:35:48,288 [wrapper] apfmon messages muted
[2026-05-27 12:35:48] 2026-05-27 10:35:48,289 [wrapper] ==== wrapper stdout END ====
[2026-05-27 12:35:48] 2026-05-27 10:35:48,290 [wrapper] ==== wrapper stderr END ====
[2026-05-27 12:35:48]  *** Error codes and diagnostics ***
[2026-05-27 12:35:48]     "exeErrorCode": 0,
[2026-05-27 12:35:48]     "pilotErrorCode": 0,
[2026-05-27 12:35:48]  *** Listing of results directory ***
[2026-05-27 12:35:48] total 441300
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc    709501 May 27 06:15 pilot3.tar.gz
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc      5631 May 27 06:19 queuedata.json
[2026-05-27 12:35:48] -rwx------. 1 boinc boinc     36281 May 27 06:19 runpilot2-wrapper.sh
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc       100 May 27 12:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-27 12:35:48] -rwxr-xr-x. 1 boinc boinc      7986 May 27 12:15 run_atlas
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc       105 May 27 12:15 job.xml
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc      6630 May 27 12:15 init_data.xml
[2026-05-27 12:35:48] -rw-r--r--. 2 boinc boinc 264918224 May 27 12:15 EVNT.49539704._000852.pool.root.1
[2026-05-27 12:35:48] -rw-r--r--. 2 boinc boinc     15667 May 27 12:15 start_atlas.sh
[2026-05-27 12:35:48] drwxrwx--x. 2 boinc boinc      4096 May 27 12:15 shared
[2026-05-27 12:35:48] -rw-r--r--. 2 boinc boinc    722753 May 27 12:15 input.tar.gz
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc         0 May 27 12:15 boinc_lockfile
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc      2578 May 27 12:15 pandaJob.out
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc    996407 May 27 12:15 agis_schedconf.cvmfs.json
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc         0 May 27 12:15 agis_ddmendpoints.agis.ALL.json
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc   1251485 May 27 12:15 cric_ddmendpoints.json
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc       443 May 27 12:15 workernode_map.json
[2026-05-27 12:35:48] drwx------. 5 boinc boinc      4096 May 27 12:15 pilot3
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc       487 May 27 12:34 boinc_task_state.xml
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc 182074071 May 27 12:34 HITS.49545126._021494.pool.root.1
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc        95 May 27 12:34 pilot_heartbeat.json
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc      1033 May 27 12:35 memory_monitor_summary.json
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc    321426 May 27 12:35 log.49545126._021494.job.log.tgz.1
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc      6422 May 27 12:35 heartbeat_new.json
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc      6313 May 27 12:35 heartbeat.json
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc      8192 May 27 12:35 boinc_mmap_file
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc        27 May 27 12:35 wrapper_checkpoint.txt
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc      5091 May 27 12:35 pilotlog.txt
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc    162602 May 27 12:35 log.49545126._021494.job.log.1
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc       357 May 27 12:35 output.list
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc       410 May 27 12:35 runtime_log
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc    501760 May 27 12:35 result.tar.gz
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc      8846 May 27 12:35 runtime_log.err
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc       657 May 27 12:35 70e70b3fe798.diag
[2026-05-27 12:35:48] -rw-r--r--. 1 boinc boinc     20959 May 27 12:35 stderr.txt
[2026-05-27 12:35:48] HITS file was successfully produced:
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc 182074071 May 27 12:34 shared/HITS.pool.root.1
[2026-05-27 12:35:48]  *** Contents of shared directory: ***
[2026-05-27 12:35:48] total 437744
[2026-05-27 12:35:48] -rw-r--r--. 2 boinc boinc 264918224 May 27 12:15 ATLAS.root_0
[2026-05-27 12:35:48] -rw-r--r--. 2 boinc boinc     15667 May 27 12:15 start_atlas.sh
[2026-05-27 12:35:48] -rw-r--r--. 2 boinc boinc    722753 May 27 12:15 input.tar.gz
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc 182074071 May 27 12:34 HITS.pool.root.1
[2026-05-27 12:35:48] -rw-------. 1 boinc boinc    501760 May 27 12:35 result.tar.gz
12:35:50 (2062830): run_atlas exited; CPU time 12128.017110
12:35:50 (2062830): called boinc_finish(0)

</stderr_txt>
]]>

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