Stderr output

<core_client_version>7.18.1</core_client_version>
<![CDATA[
<stderr_txt>
10:00:11 (1687662): wrapper (7.7.26015): starting
10:00:11 (1687662): wrapper: running run_atlas (--nthreads 12)
[2026-05-27 10:00:11] Arguments: --nthreads 12
[2026-05-27 10:00:11] Threads: 12
[2026-05-27 10:00:11] Checking for CVMFS
[2026-05-27 10:00:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-27 10:00:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-27 10:00:11] Running cvmfs_config stat atlas.cern.ch
[2026-05-27 10:00:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-27 10:00:12] 2.12.7.0 4023473 1601 71116 159856 3 187 3603519 4194305 1005 130560 0 6310544 99.997 76076 876 http://s1fnal-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2026-05-27 10:00:12] CVMFS is ok
[2026-05-27 10:00:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-27 10:00:12] Checking for apptainer binary...
[2026-05-27 10:00:12] apptainer is not installed, using version from CVMFS
[2026-05-27 10:00:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-27 10:00:12] Trebeth
[2026-05-27 10:00:12] apptainer works
[2026-05-27 10:00:12] Set ATHENA_PROC_NUMBER=12
[2026-05-27 10:00:12] Set ATHENA_CORE_NUMBER=12
[2026-05-27 10:00:12] Starting ATLAS job with PandaID=7154154398
[2026-05-27 10:00:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-27 10:55:34]  *** The last 200 lines of the pilot log: ***
[2026-05-27 10:55:34]  domain=
[2026-05-27 10:55:34]  filesize=358011
[2026-05-27 10:55:34]  filetype=log
[2026-05-27 10:55:34]  guid=cbd5bbea-c6d2-4bad-8516-33e6483cf575
[2026-05-27 10:55:34]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-27 10:55:34]  is_altstaged=None
[2026-05-27 10:55:34]  is_tar=False
[2026-05-27 10:55:34]  lfn=log.49545126._018637.job.log.tgz.1
[2026-05-27 10:55:34]  mtime=0
[2026-05-27 10:55:34]  protocol_id=None
[2026-05-27 10:55:34]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-27 10:55:34]  replicas=None
[2026-05-27 10:55:34]  scope=mc23_13p6TeV
[2026-05-27 10:55:34]  status=None
[2026-05-27 10:55:34]  status_code=0
[2026-05-27 10:55:34]  storage_token=
[2026-05-27 10:55:34]  surl=/var/lib/boinc-client/slots/1/PanDA_Pilot-7154154398/log.49545126._018637.job.log.tgz.1
[2026-05-27 10:55:34]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/ed/log.49545126._018637.job.log.tgz.1
[2026-05-27 10:55:34]  workdir=None
[2026-05-27 10:55:34] ]
[2026-05-27 10:55:34] 2026-05-27 14:54:29,530 | INFO     | transferring file log.49545126._018637.job.log.tgz.1 from /var/lib/boinc-client/slots/1/PanDA_Pilot-7154154398/log.49545126._018637.job.log.tgz.1 to /var/lib/boinc
[2026-05-27 10:55:34] 2026-05-27 14:54:29,530 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/1/PanDA_Pilot-7154154398/log.49545126._018637.job.log.tgz.1 /var/lib/boinc-client/slots/1/log.495451
[2026-05-27 10:55:34] 2026-05-27 14:54:29,541 | INFO     | adding to output.list: log.49545126._018637.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/58/ed/log.49545126._018637.job.log.tg
[2026-05-27 10:55:34] 2026-05-27 14:54:29,542 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-27 10:55:34] 2026-05-27 14:54:29,542 | INFO     | summary of transferred files:
[2026-05-27 10:55:34] 2026-05-27 14:54:29,542 | INFO     |  -- lfn=log.49545126._018637.job.log.tgz.1, status_code=0, status=transferred
[2026-05-27 10:55:34] 2026-05-27 14:54:29,542 | INFO     | stage-out finished correctly
[2026-05-27 10:55:34] 2026-05-27 14:54:31,033 | INFO     | monitor loop #249: job 0:7154154398 is in state 'finished'
[2026-05-27 10:55:34] 2026-05-27 14:54:31,033 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-27 10:55:34] 2026-05-27 14:54:33,027 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-27 10:55:34] 2026-05-27 14:54:33,541 | INFO     | monitor loop #250: job 0:7154154398 is in state 'finished'
[2026-05-27 10:55:34] 2026-05-27 14:54:33,541 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-05-27 10:55:34] 2026-05-27 14:54:35,113 | INFO     | job 7154154398 has state=finished
[2026-05-27 10:55:34] 2026-05-27 14:54:35,114 | INFO     | preparing for final server update for job 7154154398 in state='finished'
[2026-05-27 10:55:34] 2026-05-27 14:54:35,114 | INFO     | reading metadata from: /var/lib/boinc-client/slots/1/PanDA_Pilot-7154154398/jobReport.json
[2026-05-27 10:55:34] 2026-05-27 14:54:35,115 | INFO     | added worker_node to metadata from /var/lib/boinc-client/slots/1/workernode_map.json
[2026-05-27 10:55:34] 2026-05-27 14:54:35,115 | INFO     | this job has now completed (state=finished)
[2026-05-27 10:55:34] 2026-05-27 14:54:35,115 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-27 10:55:34] 2026-05-27 14:54:35,115 | INFO     | log transfer has been attempted: DONE
[2026-05-27 10:55:34] 2026-05-27 14:54:35,115 | INFO     | job 7154154398 has finished - writing final server update
[2026-05-27 10:55:34] 2026-05-27 14:54:35,116 | INFO     | total number of processed events: 400 (read)
[2026-05-27 10:55:34] 2026-05-27 14:54:35,120 | INFO     | using path: /var/lib/boinc-client/slots/1/PanDA_Pilot-7154154398/memory_monitor_summary.json (trf name=prmon)
[2026-05-27 10:55:34] 2026-05-27 14:54:35,120 | INFO     | extracted standard info from prmon json
[2026-05-27 10:55:34] 2026-05-27 14:54:35,120 | INFO     | extracted standard memory fields from prmon json
[2026-05-27 10:55:34] 2026-05-27 14:54:35,120 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-27 10:55:34] 2026-05-27 14:54:35,121 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-27 10:55:34] 2026-05-27 14:54:35,121 | INFO     | fitting pss+swap vs Time
[2026-05-27 10:55:34] 2026-05-27 14:54:35,121 | INFO     | sum of square deviations: 30168007.5
[2026-05-27 10:55:34] 2026-05-27 14:54:35,121 | INFO     | sum of deviations: -213621420.50000042
[2026-05-27 10:55:34] 2026-05-27 14:54:35,122 | INFO     | mean x (centered): 0.0
[2026-05-27 10:55:34] 2026-05-27 14:54:35,122 | INFO     | mean y: 2734767.6304347827
[2026-05-27 10:55:34] 2026-05-27 14:54:35,122 | INFO     | intersect: 2734767.6304347827
[2026-05-27 10:55:34] 2026-05-27 14:54:35,122 | INFO     | chi2: 0.044429982768061614
[2026-05-27 10:55:34] 2026-05-27 14:54:35,122 | INFO     | current memory leak: -7.08 B/s (using 46 data points, chi2=0.04)
[2026-05-27 10:55:34] 2026-05-27 14:54:35,122 | INFO     | could have reported an average CPU frequency of 1665 MHz (5 samples)
[2026-05-27 10:55:34] 2026-05-27 14:54:35,123 | INFO     | ..............................
[2026-05-27 10:55:34] 2026-05-27 14:54:35,123 | INFO     | . Timing measurements:
[2026-05-27 10:55:34] 2026-05-27 14:54:35,123 | INFO     | . get job = 0 s
[2026-05-27 10:55:34] 2026-05-27 14:54:35,123 | INFO     | . initial setup = 5 s
[2026-05-27 10:55:34] 2026-05-27 14:54:35,123 | INFO     | . payload setup = 7 s
[2026-05-27 10:55:34] 2026-05-27 14:54:35,123 | INFO     | . stage-in = 0 s
[2026-05-27 10:55:34] 2026-05-27 14:54:35,123 | INFO     | . payload execution = 3221 s
[2026-05-27 10:55:34] 2026-05-27 14:54:35,123 | INFO     | . stage-out = 0 s
[2026-05-27 10:55:34] 2026-05-27 14:54:35,123 | INFO     | . log creation = 0 s
[2026-05-27 10:55:34] 2026-05-27 14:54:35,123 | INFO     | ..............................
[2026-05-27 10:55:34] 2026-05-27 14:54:35,650 | INFO     | 
[2026-05-27 10:55:34] 2026-05-27 14:54:35,650 | INFO     | job summary report
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | --------------------------------------------------
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | PanDA job id: 7154154398
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | task id: 49545126
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | errors: (none)
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | pilot state: finished 
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | transexitcode: 0
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | exeerrorcode: 0
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | exeerrordiag: 
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | exitcode: 0
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | exitmsg: OK
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | cpuconsumptiontime: 34138 s
[2026-05-27 10:55:34] 2026-05-27 14:54:35,651 | INFO     | nevents: 400
[2026-05-27 10:55:34] 2026-05-27 14:54:35,652 | INFO     | neventsw: 0
[2026-05-27 10:55:34] 2026-05-27 14:54:35,652 | INFO     | pid: 1709091
[2026-05-27 10:55:34] 2026-05-27 14:54:35,652 | INFO     | pgrp: 1709091
[2026-05-27 10:55:34] 2026-05-27 14:54:35,652 | INFO     | corecount: 12
[2026-05-27 10:55:34] 2026-05-27 14:54:35,652 | INFO     | event service: False
[2026-05-27 10:55:34] 2026-05-27 14:54:35,652 | INFO     | sizes: {0: 2267648, 11: 2267648, 3233: 2293011, 3234: 2302023, 3237: 2302079, 3239: 2302305}
[2026-05-27 10:55:34] 2026-05-27 14:54:35,652 | INFO     | --------------------------------------------------
[2026-05-27 10:55:34] 2026-05-27 14:54:35,652 | INFO     | 
[2026-05-27 10:55:34] 2026-05-27 14:54:35,652 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/1
[2026-05-27 10:55:34] 2026-05-27 14:54:35,679 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,679 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,679 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,679 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,679 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,679 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,680 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,680 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,680 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,680 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,680 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,680 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,680 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,680 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,680 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,680 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,680 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,681 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-27 10:55:34] 2026-05-27 14:54:35,681 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,681 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-27 10:55:34] 2026-05-27 14:54:35,681 | INFO     | job 7154154398 has completed (purged errors)
[2026-05-27 10:55:34] 2026-05-27 14:54:35,681 | INFO     | overall cleanup function is called
[2026-05-27 10:55:34] 2026-05-27 14:54:36,689 | INFO     | --- collectZombieJob: --- 10, [1709091]
[2026-05-27 10:55:34] 2026-05-27 14:54:36,689 | INFO     | zombie collector waiting for pid 1709091
[2026-05-27 10:55:34] 2026-05-27 14:54:36,689 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-27 10:55:34] 2026-05-27 14:54:36,690 | INFO     | collected zombie processes
[2026-05-27 10:55:34] 2026-05-27 14:54:36,690 | INFO     | will attempt to kill all subprocesses of pid=1709091
[2026-05-27 10:55:34] 2026-05-27 14:54:36,820 | INFO     | process IDs to be killed: [1709091] (in reverse order)
[2026-05-27 10:55:34] 2026-05-27 14:54:36,870 | WARNING  | found no corresponding commands to process id(s)
[2026-05-27 10:55:34] 2026-05-27 14:54:36,870 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-27 10:55:34] 2026-05-27 14:54:36,873 | INFO     | did not find any defunct processes belonging to 1709091
[2026-05-27 10:55:34] 2026-05-27 14:54:36,876 | INFO     | did not find any defunct processes belonging to 1709091
[2026-05-27 10:55:34] 2026-05-27 14:54:36,876 | INFO     | Ready for new job
[2026-05-27 10:55:34] 2026-05-27 14:54:36,878 | INFO     | ***************************************
[2026-05-27 10:55:34] 2026-05-27 14:54:36,878 | INFO     | ***  PanDA Pilot version 3.13.1.30  ***
[2026-05-27 10:55:34] 2026-05-27 14:54:36,878 | INFO     | ***************************************
[2026-05-27 10:55:34] 2026-05-27 14:54:36,878 | INFO     | 
[2026-05-27 10:55:34] 2026-05-27 14:54:36,880 | INFO     | architecture information:
[2026-05-27 10:55:34] 2026-05-27 14:54:36,880 | INFO     | executing command: cat /etc/os-release
[2026-05-27 10:55:34] 2026-05-27 14:54:36,890 | INFO     | cat /etc/os-release:
[2026-05-27 10:55:34] NAME="CentOS Linux"
[2026-05-27 10:55:34] VERSION="7 (Core)"
[2026-05-27 10:55:34] ID="centos"
[2026-05-27 10:55:34] ID_LIKE="rhel fedora"
[2026-05-27 10:55:34] VERSION_ID="7"
[2026-05-27 10:55:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-27 10:55:34] ANSI_COLOR="0;31"
[2026-05-27 10:55:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-27 10:55:34] HOME_URL="https://www.centos.org/"
[2026-05-27 10:55:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-27 10:55:34] 
[2026-05-27 10:55:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-27 10:55:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-27 10:55:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-27 10:55:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-27 10:55:34] 
[2026-05-27 10:55:34] 2026-05-27 14:54:36,890 | INFO     | ***************************************
[2026-05-27 10:55:34] 2026-05-27 14:54:37,393 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/1
[2026-05-27 10:55:34] 2026-05-27 14:54:37,405 | INFO     | sufficient remaining disk space (395037376512 B)
[2026-05-27 10:55:34] 2026-05-27 14:54:37,406 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-27 10:55:34] 2026-05-27 14:54:37,406 | INFO     | current server update state: UPDATING_FINAL
[2026-05-27 10:55:34] 2026-05-27 14:54:37,406 | INFO     | update_server=False
[2026-05-27 10:55:34] 2026-05-27 14:54:37,406 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-27 10:55:34] 2026-05-27 14:54:37,406 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-27 10:55:34] 2026-05-27 14:54:37,406 | INFO     | aborting loop
[2026-05-27 10:55:34] 2026-05-27 14:54:37,597 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-27 10:55:34] 2026-05-27 14:54:37,703 | INFO     | all payload control threads have been joined
[2026-05-27 10:55:34] 2026-05-27 14:54:38,412 | INFO     | [job] retrieve thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:38,412 | INFO     | all data control threads have been joined
[2026-05-27 10:55:34] 2026-05-27 14:54:38,413 | INFO     | [job] job monitor thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:38,430 | INFO     | [payload] execute_payloads thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:38,581 | INFO     | [job] create_data_payload thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:38,709 | INFO     | [payload] control thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:38,741 | INFO     | all job control threads have been joined
[2026-05-27 10:55:34] 2026-05-27 14:54:38,750 | INFO     | [payload] validate_pre thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:39,043 | INFO     | [data] copytool_in thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:39,095 | INFO     | [payload] failed_post thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:39,129 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-27 10:55:34] 2026-05-27 14:54:39,418 | INFO     | [data] control thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:39,603 | INFO     | [data] copytool_out thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:39,663 | INFO     | [payload] validate_post thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:39,747 | INFO     | [job] control thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:39,886 | INFO     | [job] validate thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:40,178 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-27 10:55:34] 2026-05-27 14:54:41,183 | INFO     | [job] queue monitor thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:43,135 | INFO     | [data] queue_monitor thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:54:47,877 | INFO     | job.realtimelogging is not enabled
[2026-05-27 10:55:34] 2026-05-27 14:54:48,883 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-27 10:55:34] 2026-05-27 14:55:07,618 | INFO     | PID=1696922 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-27 10:55:34] 2026-05-27 14:55:07,618 | INFO     | .. there are 3 such processes running
[2026-05-27 10:55:34] 2026-05-27 14:55:07,619 | INFO     | found 0 job(s) in 20 queues
[2026-05-27 10:55:34] 2026-05-27 14:55:07,619 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-27 10:55:34] 2026-05-27 14:55:07,619 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-27 10:55:34] 2026-05-27 14:55:28,936 | INFO     | [monitor] cgroup control has ended
[2026-05-27 10:55:34] 2026-05-27 14:55:29,481 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139090073532224)>', '<ExcThread(monitor, started 139089537910528)>']
[2026-05-27 10:55:34] 2026-05-27 14:55:29,725 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-27 10:55:34] 2026-05-27 14:55:29,726 | INFO     | [monitor] control thread has ended
[2026-05-27 10:55:34] 2026-05-27 14:55:34,507 | INFO     | all workflow threads have been joined
[2026-05-27 10:55:34] 2026-05-27 14:55:34,507 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-27 10:55:34] 2026-05-27 14:55:34,507 | INFO     | traces error code: 0
[2026-05-27 10:55:34] 2026-05-27 14:55:34,508 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-27 10:55:34] 2026-05-27 14:55:34,616 [wrapper] ==== pilot stdout END ====
[2026-05-27 10:55:34] 2026-05-27 14:55:34,619 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-27 10:55:34] 2026-05-27 14:55:34,621 [wrapper] pilotpid: 1696922
[2026-05-27 10:55:34] 2026-05-27 14:55:34,623 [wrapper] Pilot exit status: 0
[2026-05-27 10:55:34] 2026-05-27 14:55:34,632 [wrapper] pandaids: 7154154398
[2026-05-27 10:55:34] 2026-05-27 14:55:34,670 [wrapper] cleanup supervisor_pilot 1724216 1696923
[2026-05-27 10:55:34] 2026-05-27 14:55:34,673 [wrapper] Test setup, not cleaning
[2026-05-27 10:55:34] 2026-05-27 14:55:34,676 [wrapper] apfmon messages muted
[2026-05-27 10:55:34] 2026-05-27 14:55:34,679 [wrapper] ==== wrapper stdout END ====
[2026-05-27 10:55:34] 2026-05-27 14:55:34,682 [wrapper] ==== wrapper stderr END ====
[2026-05-27 10:55:34]  *** Error codes and diagnostics ***
[2026-05-27 10:55:34]     "exeErrorCode": 0,
[2026-05-27 10:55:34]     "pilotErrorCode": 0,
[2026-05-27 10:55:34]  *** Listing of results directory ***
[2026-05-27 10:55:34] total 431060
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc    709501 May 26 22:21 pilot3.tar.gz
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc      5631 May 26 22:22 queuedata.json
[2026-05-27 10:55:34] -rwx------ 1 boinc boinc     36281 May 26 22:22 runpilot2-wrapper.sh
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc       100 May 27 10:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-27 10:55:34] -rwxr-xr-x 1 boinc boinc      7986 May 27 10:00 run_atlas
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc       105 May 27 10:00 job.xml
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc      7603 May 27 10:00 init_data.xml
[2026-05-27 10:55:34] -rw-r--r-- 2 boinc boinc 263463045 May 27 10:00 EVNT.49539704._000738.pool.root.1
[2026-05-27 10:55:34] -rw-r--r-- 2 boinc boinc     15667 May 27 10:00 start_atlas.sh
[2026-05-27 10:55:34] drwxrwx--x 2 boinc boinc      4096 May 27 10:00 shared
[2026-05-27 10:55:34] -rw-r--r-- 2 boinc boinc    722753 May 27 10:00 input.tar.gz
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc         0 May 27 10:00 boinc_lockfile
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc      2570 May 27 10:00 pandaJob.out
[2026-05-27 10:55:34] -rw------- 1 boinc boinc        50 May 27 10:00 setup.sh.local
[2026-05-27 10:55:34] -rw------- 1 boinc boinc    996455 May 27 10:00 agis_schedconf.cvmfs.json
[2026-05-27 10:55:34] -rw------- 1 boinc boinc         0 May 27 10:00 agis_ddmendpoints.agis.ALL.json
[2026-05-27 10:55:34] -rw------- 1 boinc boinc   1251485 May 27 10:00 cric_ddmendpoints.json
[2026-05-27 10:55:34] -rw------- 1 boinc boinc       430 May 27 10:00 workernode_map.json
[2026-05-27 10:55:34] drwx------ 5 boinc boinc      4096 May 27 10:00 pilot3
[2026-05-27 10:55:34] -rw------- 1 boinc boinc 172592161 May 27 10:54 HITS.49545126._018637.pool.root.1
[2026-05-27 10:55:34] -rw------- 1 boinc boinc        95 May 27 10:54 pilot_heartbeat.json
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc       487 May 27 10:54 boinc_task_state.xml
[2026-05-27 10:55:34] -rw------- 1 boinc boinc      1028 May 27 10:54 memory_monitor_summary.json
[2026-05-27 10:55:34] -rw------- 1 boinc boinc    358011 May 27 10:54 log.49545126._018637.job.log.tgz.1
[2026-05-27 10:55:34] -rw------- 1 boinc boinc      6398 May 27 10:54 heartbeat_new.json
[2026-05-27 10:55:34] -rw------- 1 boinc boinc      6289 May 27 10:54 heartbeat.json
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc        27 May 27 10:55 wrapper_checkpoint.txt
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc      8192 May 27 10:55 boinc_mmap_file
[2026-05-27 10:55:34] -rw------- 1 boinc boinc      4902 May 27 10:55 pilotlog.txt
[2026-05-27 10:55:34] -rw------- 1 boinc boinc    346208 May 27 10:55 log.49545126._018637.job.log.1
[2026-05-27 10:55:34] -rw------- 1 boinc boinc       357 May 27 10:55 output.list
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc       410 May 27 10:55 runtime_log
[2026-05-27 10:55:34] -rw------- 1 boinc boinc    727040 May 27 10:55 result.tar.gz
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc      9026 May 27 10:55 runtime_log.err
[2026-05-27 10:55:34] -rw------- 1 boinc boinc       648 May 27 10:55 55655ec80977.diag
[2026-05-27 10:55:34] -rw-r--r-- 1 boinc boinc     20799 May 27 10:55 stderr.txt
[2026-05-27 10:55:34] HITS file was successfully produced:
[2026-05-27 10:55:34] -rw------- 1 boinc boinc 172592161 May 27 10:54 shared/HITS.pool.root.1
[2026-05-27 10:55:34]  *** Contents of shared directory: ***
[2026-05-27 10:55:34] total 427284
[2026-05-27 10:55:34] -rw-r--r-- 2 boinc boinc 263463045 May 27 10:00 ATLAS.root_0
[2026-05-27 10:55:34] -rw-r--r-- 2 boinc boinc     15667 May 27 10:00 start_atlas.sh
[2026-05-27 10:55:34] -rw-r--r-- 2 boinc boinc    722753 May 27 10:00 input.tar.gz
[2026-05-27 10:55:34] -rw------- 1 boinc boinc 172592161 May 27 10:54 HITS.pool.root.1
[2026-05-27 10:55:34] -rw------- 1 boinc boinc    727040 May 27 10:55 result.tar.gz
10:55:36 (1687662): run_atlas exited; CPU time 34196.196803
10:55:36 (1687662): called boinc_finish(0)

</stderr_txt>
]]>

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