Stderr output

<core_client_version>8.2.13</core_client_version>
<![CDATA[
<stderr_txt>
2026-05-26 18:21:44 (6673): vboxwrapper version 26210
2026-05-26 18:21:44 (6673): BOINC client version: 8.2.13
2026-05-26 18:21:45 (6673): Detected: VirtualBox VboxManage Interface (Version: 7.2.8)
2026-05-26 18:21:45 (6673): Successfully copied 'init_data.xml' to the shared directory.
2026-05-26 18:21:45 (6673): Create VM. (boinc_aab11f76067e83a4, slot#3)
2026-05-26 18:21:45 (6673): Setting Memory Size for VM. (4800MB)
2026-05-26 18:21:45 (6673): Setting CPU Count for VM. (8)
2026-05-26 18:21:45 (6673): Setting Chipset Options for VM.
2026-05-26 18:21:45 (6673): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-05-26 18:21:45 (6673): Setting Boot Options for VM.
2026-05-26 18:21:45 (6673): Setting Network Configuration for NAT. (Driver: virtio)
2026-05-26 18:21:45 (6673): Enabling VM Network Access.
2026-05-26 18:21:46 (6673): Disabling USB Support for VM.
2026-05-26 18:21:46 (6673): Disabling COM Port Support for VM.
2026-05-26 18:21:46 (6673): Disabling LPT Port Support for VM.
2026-05-26 18:21:46 (6673): Disabling Audio Support for VM.
2026-05-26 18:21:46 (6673): Disabling Clipboard Support for VM.
2026-05-26 18:21:46 (6673): Disabling Drag and Drop Support for VM.
2026-05-26 18:21:46 (6673): Adding storage controller(s) to VM.
2026-05-26 18:21:46 (6673): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-05-26 18:21:47 (6673): Adding VirtualBox Guest Additions to VM.
2026-05-26 18:21:47 (6673): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-05-26 18:21:47 (6673): forwarding host port 42047 to guest port 80
2026-05-26 18:21:47 (6673): Enabling remote desktop for VM.
2026-05-26 18:21:47 (6673): Required extension pack not installed, remote desktop not enabled.
2026-05-26 18:21:47 (6673): Enabling shared directory for VM.
2026-05-26 18:21:47 (6673): Starting VM using VBoxManage interface. (boinc_aab11f76067e83a4, slot#3)
2026-05-26 18:21:48 (6673): Successfully started VM. (PID = '7273')
2026-05-26 18:21:48 (6673): Reporting VM Process ID to BOINC.
2026-05-26 18:21:48 (6673): Guest Log: BIOS: VirtualBox 7.2.8
2026-05-26 18:21:48 (6673): Guest Log: CPUID EDX: 0x178bfbff
2026-05-26 18:21:48 (6673): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-05-26 18:21:48 (6673): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-05-26 18:21:48 (6673): VM state change detected. (old = 'poweredoff', new = 'running')
2026-05-26 18:21:48 (6673): Detected: Web Application Enabled (http://localhost:42047)
2026-05-26 18:21:48 (6673): Preference change detected
2026-05-26 18:21:48 (6673): Setting CPU throttle for VM. (100%)
2026-05-26 18:21:48 (6673): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2026-05-26 18:21:50 (6673): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-05-26 18:21:50 (6673): Guest Log: BIOS: Booting from Hard Disk...
2026-05-26 18:21:53 (6673): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-05-26 18:21:53 (6673): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-05-26 18:21:53 (6673): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-05-26 18:21:58 (6673): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-05-26 18:21:58 (6673): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-05-26 18:22:04 (6673): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-05-26 18:22:04 (6673): Guest Log: 00:00:00.000167 main     Log opened 2026-05-26T16:22:02.619214000Z
2026-05-26 18:22:04 (6673): Guest Log: 00:00:00.000295 main     OS Product: Linux
2026-05-26 18:22:04 (6673): Guest Log: 00:00:00.000330 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-05-26 18:22:04 (6673): Guest Log: 00:00:00.000352 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-05-26 18:22:04 (6673): Guest Log: 00:00:00.000373 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-05-26 18:22:04 (6673): Guest Log: 00:00:00.000374 main     Process ID: 1392
2026-05-26 18:22:04 (6673): Guest Log: 00:00:00.000374 main     Package type: LINUX_64BITS_GENERIC
2026-05-26 18:22:04 (6673): Guest Log: 00:00:00.001024 main     5.2.32 r132073 started. Verbose level = 0
2026-05-26 18:22:04 (6673): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-05-26 18:22:04 (6673): Guest Log: [INFO] Mounting shared directory
2026-05-26 18:22:04 (6673): Guest Log: [INFO] Checking for init_data.xml
2026-05-26 18:22:13 (6673): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-05-26 18:22:13 (6673): Guest Log: [INFO] Detected branch: prod
2026-05-26 18:22:13 (6673): Guest Log: This is the prod version of the ATLAS job wrapper
2026-05-26 18:22:13 (6673): Guest Log: Copying input files
2026-05-26 18:22:19 (6673): Guest Log: Copied input files into RunAtlas.
2026-05-26 18:22:19 (6673): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-05-26 18:22:19 (6673): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-05-26 18:22:19 (6673): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-05-26 18:22:19 (6673): Guest Log: Further information can be found at the LHC@home message board.
2026-05-26 18:22:30 (6673): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-05-26 18:22:30 (6673): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-05-26 18:22:30 (6673): Guest Log: 2.6.3.0 1669 0 32164 159808 4 1 3117654 4096001 0 65024 0 0 n/a 0 0 http://s1ihep-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-05-26 18:22:31 (6673): Guest Log: copied the webapp to /var/www
2026-05-26 18:22:31 (6673): Guest Log: ATHENA_PROC_NUMBER=8
2026-05-26 18:22:31 (6673): Guest Log: ATHENA_CORE_NUMBER=8
2026-05-26 18:22:33 (6673): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-05-26 18:22:33 (6673): Guest Log:  *** Starting ATLAS job. (PandaID=7143114393 taskID=50087083) ***
2026-05-26 19:39:47 (6673): VM state change detected. (old = 'running', new = 'paused')
2026-05-26 20:41:53 (6673): VM state change detected. (old = 'paused', new = 'running')
2026-05-26 20:41:59 (6673): Guest Log: 01:17:48.861952 timesync vgsvcTimeSyncWorker: Radical host time change: 3 734 850 000 000ns (HostNow=1 779 820 913 968 000 000 ns HostLast=1 779 817 179 118 000 000 ns)
2026-05-26 20:42:09 (6673): Guest Log: 01:17:58.862932 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 732 513 871 000ns (GuestNow=1 779 820 923 981 885 000 ns GuestLast=1 779 817 191 468 014 000 ns fSetTimeLastLoop=true )
2026-05-26 21:02:55 (6673): Status Report: Elapsed Time: '6000.000000'
2026-05-26 21:02:55 (6673): Status Report: CPU Time: '32692.630000'
2026-05-26 21:17:43 (6673): Guest Log:  *** Job finished ***
2026-05-26 21:17:43 (6673): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:13,766 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:13,766 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:27,189 | INFO     | [monitor] cgroup control has ended
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:29,316 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139622767068992)>', '<ExcThread(monitor, started 139622550894336)>']
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:30,239 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:30,240 | INFO     | [monitor] control thread has ended
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:34,322 | INFO     | all workflow threads have been joined
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:34,322 | INFO     | end of generic workflow (traces error code: 0)
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:34,322 | INFO     | traces error code: 0
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:34,322 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:34,437 [wrapper] ==== pilot stdout END ====
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:34,444 [wrapper] ==== wrapper stdout RESUME ====
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:34,451 [wrapper] pilotpid: 6180
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:34,462 [wrapper] Pilot exit status: 0
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:36,323 [wrapper] pandaids: 7143114393
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:36,365 [wrapper] cleanup supervisor_pilot 26503 6181
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:36,372 [wrapper] Test setup, not cleaning
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:36,379 [wrapper] apfmon messages muted
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:36,385 [wrapper] ==== wrapper stdout END ====
2026-05-26 21:17:43 (6673): Guest Log: 2026-05-26 19:17:36,391 [wrapper] ==== wrapper stderr END ====
2026-05-26 21:17:43 (6673): Guest Log:  *** Error codes and diagnostics ***
2026-05-26 21:17:43 (6673): Guest Log:     "exeErrorCode": 0,
2026-05-26 21:17:43 (6673): Guest Log:     "pilotErrorCode": 0,
2026-05-26 21:17:43 (6673): Guest Log:  *** Listing of results directory ***
2026-05-26 21:17:44 (6673): Guest Log: total 170800
2026-05-26 21:17:44 (6673): Guest Log: -rwx------. 1 atlas atlas     36281 May 18 09:25 runpilot2-wrapper.sh
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 atlas atlas    683926 May 18 12:57 pilot3.tar.gz
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 atlas atlas      5631 May 18 13:06 queuedata.json
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 atlas atlas     15667 May 26 16:22 start_atlas.sh
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 atlas atlas    697440 May 26 16:22 input.tar.gz
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 atlas atlas      8816 May 26 16:22 init_data.xml
2026-05-26 21:17:44 (6673): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 May 26 16:22 EVNT.46375503._000166.pool.root.1 -> /data/./ATLAS.root_0
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 atlas atlas      2599 May 26 16:22 pandaJob.out
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas   1502789 May 26 16:29 agis_ddmendpoints.agis.ALL.json
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas       423 May 26 16:29 workernode_map.json
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas    996457 May 26 16:30 agis_schedconf.cvmfs.json
2026-05-26 21:17:44 (6673): Guest Log: drwx------. 5 atlas atlas      4096 May 26 16:30 pilot3
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas 168794800 May 26 19:16 HITS.50087083._021670.pool.root.1
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas        97 May 26 19:16 pilot_heartbeat.json
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas      1041 May 26 19:16 memory_monitor_summary.json
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas    431718 May 26 19:16 log.50087083._021670.job.log.tgz.1
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas      6367 May 26 19:16 heartbeat_new.json
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas      6258 May 26 19:16 heartbeat.json
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas      4876 May 26 19:17 pilotlog.txt
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas    590789 May 26 19:17 log.50087083._021670.job.log.1
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas       357 May 26 19:17 output.list
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 atlas atlas       410 May 26 19:17 runtime_log
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas   1044480 May 26 19:17 result.tar.gz
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 atlas atlas      8375 May 26 19:17 runtime_log.err
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas       657 May 26 19:17 daec824bc837.diag
2026-05-26 21:17:44 (6673): Guest Log: Looking for outputfile HITS.50087083._021670.pool.root.1
2026-05-26 21:17:44 (6673): Guest Log: HITS file was successfully produced
2026-05-26 21:17:44 (6673): Guest Log: -rw-------. 1 atlas atlas 168794800 May 26 19:16 /home/atlas/RunAtlas/HITS.50087083._021670.pool.root.1
2026-05-26 21:17:44 (6673): Guest Log: Successfully finished the ATLAS job!
2026-05-26 21:17:44 (6673): Guest Log: Copying the results back to the shared directory!
2026-05-26 21:17:44 (6673): Guest Log:  *** Contents of shared directory: ***
2026-05-26 21:17:44 (6673): Guest Log: total 974228
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 root root 995832666 May 26 16:21 ATLAS.root_0
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 root root      8816 May 26 16:21 init_data.xml
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 root root    697440 May 26 16:21 input.tar.gz
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 root root   1044480 May 26  2026 result.tar.gz
2026-05-26 21:17:44 (6673): Guest Log: -rw-r--r--. 1 root root     15667 May 26 16:21 start_atlas.sh
2026-05-26 21:17:44 (6673): Guest Log:  *** Success! Shutting down the machine. ***
2026-05-26 21:17:44 (6673): VM Completion File Detected.
2026-05-26 21:17:44 (6673): Powering off VM.
2026-05-26 21:17:44 (6673): Successfully stopped VM.
2026-05-26 21:17:44 (6673): Deregistering VM. (boinc_aab11f76067e83a4, slot#3)
2026-05-26 21:17:44 (6673): Removing network bandwidth throttle group from VM.
2026-05-26 21:17:44 (6673): Removing VM from VirtualBox.
2026-05-26 21:17:49 (6673): called boinc_finish(0)

</stderr_txt>
]]>

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