Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
13:42:59 (266426): wrapper (7.7.26015): starting
13:42:59 (266426): wrapper: running run_atlas (--nthreads 11)
[2026-05-21 13:42:59] Arguments: --nthreads 11
[2026-05-21 13:42:59] Threads: 11
[2026-05-21 13:42:59] Checking for CVMFS
[2026-05-21 13:42:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-21 13:43:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-21 13:43:00] Running cvmfs_config stat atlas.cern.ch
[2026-05-21 13:43:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-21 13:43:00] 2.13.3.0 4141114 3635 284756 159750 3 193 28362035 32935936 26343 16776704 0 3170976 99.632 11091666 44550 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-05-21 13:43:00] CVMFS is ok
[2026-05-21 13:43:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-21 13:43:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-21 13:43:00] Further information can be found at the LHC@home message board.
[2026-05-21 13:43:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-21 13:43:00] Checking for apptainer binary...
[2026-05-21 13:43:00] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-21 13:43:00] Running /usr/bin/apptainer --version
[2026-05-21 13:43:00] apptainer version 1.4.5-3.el9
[2026-05-21 13:43:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-21 13:43:00] c6-6-8-3.aglt2.org
[2026-05-21 13:43:00] apptainer works
[2026-05-21 13:43:00] Set ATHENA_PROC_NUMBER=11
[2026-05-21 13:43:00] Set ATHENA_CORE_NUMBER=11
[2026-05-21 13:43:00] Starting ATLAS job with PandaID=7148783029
[2026-05-21 13:43:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-21 16:26:10]  *** The last 200 lines of the pilot log: ***
[2026-05-21 16:26:10] 2026-05-21 20:25:36,536 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-21 16:26:10] 2026-05-21 20:25:36,536 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-21 16:26:10] 2026-05-21 20:25:36,539 | INFO     | fitting pss+swap vs Time
[2026-05-21 16:26:10] 2026-05-21 20:25:36,539 | INFO     | sum of square deviations: 1246399585.7735808
[2026-05-21 16:26:10] 2026-05-21 20:25:36,540 | INFO     | sum of deviations: 24130003908.88679
[2026-05-21 16:26:10] 2026-05-21 20:25:36,540 | INFO     | mean x (centered): 0.0
[2026-05-21 16:26:10] 2026-05-21 20:25:36,541 | INFO     | mean y: 2706279.352201258
[2026-05-21 16:26:10] 2026-05-21 20:25:36,541 | INFO     | intersect: 2706279.352201258
[2026-05-21 16:26:10] 2026-05-21 20:25:36,541 | INFO     | chi2: 1.692676128843545
[2026-05-21 16:26:10] 2026-05-21 20:25:36,541 | INFO     | sum of square deviations: 1132464242.337665
[2026-05-21 16:26:10] 2026-05-21 20:25:36,542 | INFO     | sum of deviations: 23102956939.000042
[2026-05-21 16:26:10] 2026-05-21 20:25:36,542 | INFO     | mean x (centered): 0.0
[2026-05-21 16:26:10] 2026-05-21 20:25:36,542 | INFO     | mean y: 2704910.0
[2026-05-21 16:26:10] 2026-05-21 20:25:36,542 | INFO     | intersect: 2704910.0
[2026-05-21 16:26:10] 2026-05-21 20:25:36,543 | INFO     | chi2: 1.6945214982163022
[2026-05-21 16:26:10] 2026-05-21 20:25:36,543 | INFO     | current chi2=1.6945214982163022 (change=-0.10902081864992808 %)
[2026-05-21 16:26:10] 2026-05-21 20:25:36,543 | INFO     | right removable region: 153
[2026-05-21 16:26:10] 2026-05-21 20:25:36,543 | INFO     | sum of square deviations: 1132470038.2662396
[2026-05-21 16:26:10] 2026-05-21 20:25:36,544 | INFO     | sum of deviations: -3219624901.4480524
[2026-05-21 16:26:10] 2026-05-21 20:25:36,544 | INFO     | mean x (centered): 0.0
[2026-05-21 16:26:10] 2026-05-21 20:25:36,544 | INFO     | mean y: 2742382.824675325
[2026-05-21 16:26:10] 2026-05-21 20:25:36,544 | INFO     | intersect: 2742382.824675325
[2026-05-21 16:26:10] 2026-05-21 20:25:36,545 | INFO     | chi2: 0.14534536082009494
[2026-05-21 16:26:10] 2026-05-21 20:25:36,545 | INFO     | current chi2=0.14534536082009494 (change=91.41327993327369 %)
[2026-05-21 16:26:10] 2026-05-21 20:25:36,545 | INFO     | sum of square deviations: 1025703415.7583911
[2026-05-21 16:26:10] 2026-05-21 20:25:36,546 | INFO     | sum of deviations: -6419024644.275167
[2026-05-21 16:26:10] 2026-05-21 20:25:36,546 | INFO     | mean x (centered): 0.0
[2026-05-21 16:26:10] 2026-05-21 20:25:36,546 | INFO     | mean y: 2746953.879194631
[2026-05-21 16:26:10] 2026-05-21 20:25:36,546 | INFO     | intersect: 2746953.879194631
[2026-05-21 16:26:10] 2026-05-21 20:25:36,546 | INFO     | chi2: 0.12700274773667206
[2026-05-21 16:26:10] 2026-05-21 20:25:36,547 | INFO     | current chi2=0.12700274773667206 (change=12.620019641443486 %)
[2026-05-21 16:26:10] 2026-05-21 20:25:36,547 | INFO     | left removable region: 10
[2026-05-21 16:26:10] 2026-05-21 20:25:36,547 | INFO     | sum of square deviations: 906706566.8251762
[2026-05-21 16:26:10] 2026-05-21 20:25:36,548 | INFO     | sum of deviations: -6416678710.636361
[2026-05-21 16:26:10] 2026-05-21 20:25:36,548 | INFO     | mean x (centered): 0.0
[2026-05-21 16:26:10] 2026-05-21 20:25:36,548 | INFO     | mean y: 2746966.727272727
[2026-05-21 16:26:10] 2026-05-21 20:25:36,548 | INFO     | intersect: 2746966.727272727
[2026-05-21 16:26:10] 2026-05-21 20:25:36,548 | INFO     | chi2: 0.12603055950727113
[2026-05-21 16:26:10] 2026-05-21 20:25:36,548 | INFO     | current memory leak: -7.08 B/s (using 143 data points, chi2=0.13)
[2026-05-21 16:26:10] 2026-05-21 20:25:36,549 | INFO     | could have reported an average CPU frequency of 2739 MHz (9 samples)
[2026-05-21 16:26:10] 2026-05-21 20:25:36,549 | INFO     | ..............................
[2026-05-21 16:26:10] 2026-05-21 20:25:36,549 | INFO     | . Timing measurements:
[2026-05-21 16:26:10] 2026-05-21 20:25:36,549 | INFO     | . get job = 0 s
[2026-05-21 16:26:10] 2026-05-21 20:25:36,549 | INFO     | . initial setup = 10 s
[2026-05-21 16:26:10] 2026-05-21 20:25:36,549 | INFO     | . payload setup = 22 s
[2026-05-21 16:26:10] 2026-05-21 20:25:36,549 | INFO     | . stage-in = 0 s
[2026-05-21 16:26:10] 2026-05-21 20:25:36,549 | INFO     | . payload execution = 9688 s
[2026-05-21 16:26:10] 2026-05-21 20:25:36,550 | INFO     | . stage-out = 1 s
[2026-05-21 16:26:10] 2026-05-21 20:25:36,550 | INFO     | . log creation = 0 s
[2026-05-21 16:26:10] 2026-05-21 20:25:36,550 | INFO     | ..............................
[2026-05-21 16:26:10] 2026-05-21 20:25:36,679 | INFO     | 
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | job summary report
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | --------------------------------------------------
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | PanDA job id: 7148783029
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | task id: 50392088
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | errors: (none)
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | pilot state: finished 
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | transexitcode: 0
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | exeerrorcode: 0
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | exeerrordiag: 
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | exitcode: 0
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | exitmsg: OK
[2026-05-21 16:26:10] 2026-05-21 20:25:36,680 | INFO     | cpuconsumptiontime: 62648 s
[2026-05-21 16:26:10] 2026-05-21 20:25:36,681 | INFO     | nevents: 400
[2026-05-21 16:26:10] 2026-05-21 20:25:36,681 | INFO     | neventsw: 0
[2026-05-21 16:26:10] 2026-05-21 20:25:36,681 | INFO     | pid: 278728
[2026-05-21 16:26:10] 2026-05-21 20:25:36,681 | INFO     | pgrp: 278728
[2026-05-21 16:26:10] 2026-05-21 20:25:36,681 | INFO     | corecount: 11
[2026-05-21 16:26:10] 2026-05-21 20:25:36,681 | INFO     | event service: False
[2026-05-21 16:26:10] 2026-05-21 20:25:36,681 | INFO     | sizes: {0: 2265847, 1: 2267676, 12: 2267676, 9714: 2296296, 9716: 2305552}
[2026-05-21 16:26:10] 2026-05-21 20:25:36,681 | INFO     | --------------------------------------------------
[2026-05-21 16:26:10] 2026-05-21 20:25:36,681 | INFO     | 
[2026-05-21 16:26:10] 2026-05-21 20:25:36,681 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-05-21 16:26:10] 2026-05-21 20:25:36,734 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,734 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,735 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,736 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,736 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,736 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,736 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,736 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,736 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,736 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,736 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,736 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,736 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,737 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,737 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,737 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,737 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,737 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-21 16:26:10] 2026-05-21 20:25:36,737 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,737 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-21 16:26:10] 2026-05-21 20:25:36,737 | INFO     | job 7148783029 has completed (purged errors)
[2026-05-21 16:26:10] 2026-05-21 20:25:36,737 | INFO     | overall cleanup function is called
[2026-05-21 16:26:10] 2026-05-21 20:25:37,646 | INFO     | PID=270720 has CPU usage=12.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-21 16:26:10] 2026-05-21 20:25:37,646 | INFO     | .. there are 29 such processes running
[2026-05-21 16:26:10] 2026-05-21 20:25:37,746 | INFO     | --- collectZombieJob: --- 10, [278728]
[2026-05-21 16:26:10] 2026-05-21 20:25:37,746 | INFO     | zombie collector waiting for pid 278728
[2026-05-21 16:26:10] 2026-05-21 20:25:37,746 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-21 16:26:10] 2026-05-21 20:25:37,746 | INFO     | collected zombie processes
[2026-05-21 16:26:10] 2026-05-21 20:25:37,746 | INFO     | will attempt to kill all subprocesses of pid=278728
[2026-05-21 16:26:10] 2026-05-21 20:25:38,096 | INFO     | process IDs to be killed: [278728] (in reverse order)
[2026-05-21 16:26:10] 2026-05-21 20:25:38,259 | WARNING  | found no corresponding commands to process id(s)
[2026-05-21 16:26:10] 2026-05-21 20:25:38,259 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-21 16:26:10] 2026-05-21 20:25:38,277 | INFO     | did not find any defunct processes belonging to 278728
[2026-05-21 16:26:10] 2026-05-21 20:25:38,296 | INFO     | did not find any defunct processes belonging to 278728
[2026-05-21 16:26:10] 2026-05-21 20:25:38,296 | INFO     | Ready for new job
[2026-05-21 16:26:10] 2026-05-21 20:25:38,298 | INFO     | ***************************************
[2026-05-21 16:26:10] 2026-05-21 20:25:38,298 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-21 16:26:10] 2026-05-21 20:25:38,298 | INFO     | ***************************************
[2026-05-21 16:26:10] 2026-05-21 20:25:38,298 | INFO     | 
[2026-05-21 16:26:10] 2026-05-21 20:25:38,304 | INFO     | architecture information:
[2026-05-21 16:26:10] 2026-05-21 20:25:38,304 | INFO     | executing command: cat /etc/os-release
[2026-05-21 16:26:10] 2026-05-21 20:25:38,362 | INFO     | cat /etc/os-release:
[2026-05-21 16:26:10] NAME="CentOS Linux"
[2026-05-21 16:26:10] VERSION="7 (Core)"
[2026-05-21 16:26:10] ID="centos"
[2026-05-21 16:26:10] ID_LIKE="rhel fedora"
[2026-05-21 16:26:10] VERSION_ID="7"
[2026-05-21 16:26:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-21 16:26:10] ANSI_COLOR="0;31"
[2026-05-21 16:26:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-21 16:26:10] HOME_URL="https://www.centos.org/"
[2026-05-21 16:26:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-21 16:26:10] 
[2026-05-21 16:26:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-21 16:26:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-21 16:26:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-21 16:26:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-21 16:26:10] 
[2026-05-21 16:26:10] 2026-05-21 20:25:38,363 | INFO     | ***************************************
[2026-05-21 16:26:10] 2026-05-21 20:25:38,867 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-05-21 16:26:10] 2026-05-21 20:25:38,896 | INFO     | sufficient remaining disk space (92311388160 B)
[2026-05-21 16:26:10] 2026-05-21 20:25:38,897 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-21 16:26:10] 2026-05-21 20:25:38,897 | INFO     | current server update state: UPDATING_FINAL
[2026-05-21 16:26:10] 2026-05-21 20:25:38,897 | INFO     | update_server=False
[2026-05-21 16:26:10] 2026-05-21 20:25:38,897 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-21 16:26:10] 2026-05-21 20:25:38,897 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-21 16:26:10] 2026-05-21 20:25:39,216 | INFO     | all data control threads have been joined
[2026-05-21 16:26:10] 2026-05-21 20:25:39,331 | INFO     | all payload control threads have been joined
[2026-05-21 16:26:10] 2026-05-21 20:25:39,391 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-21 16:26:10] 2026-05-21 20:25:39,643 | INFO     | all job control threads have been joined
[2026-05-21 16:26:10] 2026-05-21 20:25:39,826 | WARNING  | process 278728 can no longer be monitored (due to stat problems) - aborting
[2026-05-21 16:26:10] 2026-05-21 20:25:39,894 | INFO     | job.realtimelogging is not enabled
[2026-05-21 16:26:10] 2026-05-21 20:25:39,919 | INFO     | [job] retrieve thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:40,118 | INFO     | [job] create_data_payload thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:40,212 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-21 16:26:10] 2026-05-21 20:25:40,213 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-21 16:26:10] 2026-05-21 20:25:40,213 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-05-21 16:26:10] 2026-05-21 20:25:40,213 | WARNING  | maxPSS not found in memory monitor output
[2026-05-21 16:26:10] 2026-05-21 20:25:40,214 | INFO     | skipping file size check of payload stdout file (/tmp/boinchome/slots/0/PanDA_Pilot-7148783029/payload.stdout) since it has not been created yet
[2026-05-21 16:26:10] 2026-05-21 20:25:40,214 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-05-21 16:26:10] 2026-05-21 20:25:40,222 | INFO     | [data] control thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:40,233 | INFO     | sufficient remaining disk space (92311388160 B)
[2026-05-21 16:26:10] 2026-05-21 20:25:40,234 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-05-21 16:26:10] 2026-05-21 20:25:40,234 | INFO     | output file size check: skipping output file /tmp/boinchome/slots/0/PanDA_Pilot-7148783029/HITS.50392088._003036.pool.root.1 since it does not exist
[2026-05-21 16:26:10] 2026-05-21 20:25:40,337 | INFO     | [payload] control thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:40,537 | INFO     | [payload] failed_post thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:40,537 | INFO     | [payload] execute_payloads thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:40,649 | INFO     | [job] control thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:40,650 | INFO     | number of running child processes to parent process 278728: 1
[2026-05-21 16:26:10] 2026-05-21 20:25:40,650 | INFO     | maximum number of monitored processes: 6
[2026-05-21 16:26:10] 2026-05-21 20:25:40,651 | INFO     | aborting job monitoring since job object (job id=7148783029) has expired
[2026-05-21 16:26:10] 2026-05-21 20:25:40,651 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-21 16:26:10] 2026-05-21 20:25:40,651 | INFO     | will abort loop
[2026-05-21 16:26:10] 2026-05-21 20:25:40,899 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:40,996 | INFO     | [payload] validate_post thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:41,105 | INFO     | [payload] validate_pre thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:41,172 | INFO     | [data] copytool_in thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:41,261 | INFO     | [job] validate thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:41,398 | INFO     | [data] copytool_out thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:41,657 | INFO     | [job] job monitor thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:41,734 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-21 16:26:10] 2026-05-21 20:25:42,739 | INFO     | [job] queue monitor thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:42,927 | INFO     | [data] queue_monitor thread has finished
[2026-05-21 16:26:10] 2026-05-21 20:25:44,616 | INFO     | [monitor] cgroup control has ended
[2026-05-21 16:26:10] 2026-05-21 20:25:46,692 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139881856300864)>', '<ExcThread(monitor, started 139881498007296)>']
[2026-05-21 16:26:10] 2026-05-21 20:25:51,718 | INFO     | all workflow threads have been joined
[2026-05-21 16:26:10] 2026-05-21 20:25:51,718 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-21 16:26:10] 2026-05-21 20:25:51,718 | INFO     | traces error code: 0
[2026-05-21 16:26:10] 2026-05-21 20:25:51,718 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-21 16:26:10] 2026-05-21 20:26:10,389 | INFO     | PID=270720 has CPU usage=6.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-21 16:26:10] 2026-05-21 20:26:10,389 | INFO     | .. there are 29 such processes running
[2026-05-21 16:26:10] 2026-05-21 20:26:10,391 | INFO     | found 0 job(s) in 20 queues
[2026-05-21 16:26:10] 2026-05-21 20:26:10,391 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-21 16:26:10] 2026-05-21 20:26:10,391 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-21 16:26:10] 2026-05-21 20:26:10,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-21 16:26:10] 2026-05-21 20:26:10,391 | INFO     | [monitor] control thread has ended
[2026-05-21 16:26:10] 2026-05-21 20:26:10,565 [wrapper] ==== pilot stdout END ====
[2026-05-21 16:26:10] 2026-05-21 20:26:10,569 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-21 16:26:10] 2026-05-21 20:26:10,575 [wrapper] pilotpid: 270720
[2026-05-21 16:26:10] 2026-05-21 20:26:10,579 [wrapper] Pilot exit status: 0
[2026-05-21 16:26:10] 2026-05-21 20:26:10,600 [wrapper] pandaids: 7148783029
[2026-05-21 16:26:10] 2026-05-21 20:26:10,717 [wrapper] cleanup supervisor_pilot 1023261 270721
[2026-05-21 16:26:10] 2026-05-21 20:26:10,721 [wrapper] Test setup, not cleaning
[2026-05-21 16:26:10] 2026-05-21 20:26:10,724 [wrapper] apfmon messages muted
[2026-05-21 16:26:10] 2026-05-21 20:26:10,728 [wrapper] ==== wrapper stdout END ====
[2026-05-21 16:26:10] 2026-05-21 20:26:10,731 [wrapper] ==== wrapper stderr END ====
[2026-05-21 16:26:10]  *** Error codes and diagnostics ***
[2026-05-21 16:26:10]     "exeErrorCode": 0,
[2026-05-21 16:26:10]     "pilotErrorCode": 0,
[2026-05-21 16:26:10]  *** Listing of results directory ***
[2026-05-21 16:26:10] total 465180
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas    683926 May 21 11:55 pilot3.tar.gz
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas      5631 May 21 11:58 queuedata.json
[2026-05-21 16:26:10] -rwx------. 1 boincer umatlas     36281 May 21 11:59 runpilot2-wrapper.sh
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas       100 May 21 13:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-21 16:26:10] -rwxr-xr-x. 1 boincer umatlas      7986 May 21 13:42 run_atlas
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas       105 May 21 13:42 job.xml
[2026-05-21 16:26:10] -rw-r--r--. 2 boincer umatlas 254808488 May 21 13:42 EVNT.50392079._000116.pool.root.1
[2026-05-21 16:26:10] -rw-r--r--. 2 boincer umatlas     15667 May 21 13:42 start_atlas.sh
[2026-05-21 16:26:10] drwxrwx--x. 2 boincer umatlas      4096 May 21 13:42 shared
[2026-05-21 16:26:10] -rw-r--r--. 2 boincer umatlas    697429 May 21 13:42 input.tar.gz
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas         0 May 21 13:42 boinc_lockfile
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas      2611 May 21 13:43 pandaJob.out
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas        57 May 21 13:43 setup.sh.local
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas    994435 May 21 13:43 agis_schedconf.cvmfs.json
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas   1502787 May 21 13:43 agis_ddmendpoints.agis.ALL.json
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas       442 May 21 13:43 workernode_map.json
[2026-05-21 16:26:10] drwx------. 5 boincer umatlas      4096 May 21 13:43 pilot3
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas      6772 May 21 16:22 init_data.xml
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas 214807771 May 21 16:24 HITS.50392088._003036.pool.root.1
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas       487 May 21 16:24 boinc_task_state.xml
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas      1043 May 21 16:25 memory_monitor_summary.json
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas    403106 May 21 16:25 log.50392088._003036.job.log.tgz.1
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas      6409 May 21 16:25 heartbeat_new.json
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas      6300 May 21 16:25 heartbeat.json
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas        27 May 21 16:26 wrapper_checkpoint.txt
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas      8192 May 21 16:26 boinc_mmap_file
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas        95 May 21 16:26 pilot_heartbeat.json
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas       822 May 21 16:26 pilotlog.txt
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas    895425 May 21 16:26 log.50392088._003036.job.log.1
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas       357 May 21 16:26 output.list
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas       410 May 21 16:26 runtime_log
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas   1320960 May 21 16:26 result.tar.gz
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas      8966 May 21 16:26 runtime_log.err
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas       654 May 21 16:26 2bee0c710fa2.diag
[2026-05-21 16:26:10] -rw-r--r--. 1 boincer umatlas     21459 May 21 16:26 stderr.txt
[2026-05-21 16:26:10] HITS file was successfully produced:
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas 214807771 May 21 16:24 shared/HITS.pool.root.1
[2026-05-21 16:26:10]  *** Contents of shared directory: ***
[2026-05-21 16:26:10] total 460616
[2026-05-21 16:26:10] -rw-r--r--. 2 boincer umatlas 254808488 May 21 13:42 ATLAS.root_0
[2026-05-21 16:26:10] -rw-r--r--. 2 boincer umatlas     15667 May 21 13:42 start_atlas.sh
[2026-05-21 16:26:10] -rw-r--r--. 2 boincer umatlas    697429 May 21 13:42 input.tar.gz
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas 214807771 May 21 16:24 HITS.pool.root.1
[2026-05-21 16:26:10] -rw-------. 1 boincer umatlas   1320960 May 21 16:26 result.tar.gz
16:26:12 (266426): run_atlas exited; CPU time 63018.044304
16:26:12 (266426): called boinc_finish(0)

</stderr_txt>
]]>

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