Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:43:30 (1093837): wrapper (7.7.26015): starting
12:43:30 (1093837): wrapper: running run_atlas (--nthreads 4)
[2026-05-19 12:43:30] Arguments: --nthreads 4
[2026-05-19 12:43:30] Threads: 4
[2026-05-19 12:43:30] Checking for CVMFS
[2026-05-19 12:43:30] No cvmfs_config command found, will try listing directly
[2026-05-19 12:43:30] CVMFS is ok
[2026-05-19 12:43:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-19 12:43:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-19 12:43:30] Further information can be found at the LHC@home message board.
[2026-05-19 12:43:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-19 12:43:30] Checking for apptainer binary...
[2026-05-19 12:43:30] which: no apptainer in ((null))
[2026-05-19 12:43:30] apptainer is not installed, using version from CVMFS
[2026-05-19 12:43:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-19 12:43:32] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot32/slots/47/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut15.grid.cesnet.cz
[2026-05-19 12:43:32] apptainer works
[2026-05-19 12:43:32] Set ATHENA_PROC_NUMBER=4
[2026-05-19 12:43:32] Set ATHENA_CORE_NUMBER=4
[2026-05-19 12:43:32] Starting ATLAS job with PandaID=7143405440
[2026-05-19 12:43:32] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot32/slots/47 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-19 15:19:43]  *** The last 200 lines of the pilot log: ***
[2026-05-19 15:19:43] 2026-05-19 13:18:50,160 | INFO     | extracted standard info from prmon json
[2026-05-19 15:19:43] 2026-05-19 13:18:50,160 | INFO     | extracted standard memory fields from prmon json
[2026-05-19 15:19:43] 2026-05-19 13:18:50,160 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-19 15:19:43] 2026-05-19 13:18:50,160 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-19 15:19:43] 2026-05-19 13:18:50,163 | INFO     | fitting pss+swap vs Time
[2026-05-19 15:19:43] 2026-05-19 13:18:50,163 | INFO     | sum of square deviations: 1046480163.493336
[2026-05-19 15:19:43] 2026-05-19 13:18:50,164 | INFO     | sum of deviations: 27370366553.28001
[2026-05-19 15:19:43] 2026-05-19 13:18:50,165 | INFO     | mean x (centered): 0.0
[2026-05-19 15:19:43] 2026-05-19 13:18:50,165 | INFO     | mean y: 2283222.22
[2026-05-19 15:19:43] 2026-05-19 13:18:50,166 | INFO     | intersect: 2283222.22
[2026-05-19 15:19:43] 2026-05-19 13:18:50,166 | INFO     | chi2: 1.7270788110609923
[2026-05-19 15:19:43] 2026-05-19 13:18:50,166 | INFO     | sum of square deviations: 945278570.9931037
[2026-05-19 15:19:43] 2026-05-19 13:18:50,167 | INFO     | sum of deviations: 26293815134.31724
[2026-05-19 15:19:43] 2026-05-19 13:18:50,167 | INFO     | mean x (centered): 0.0
[2026-05-19 15:19:43] 2026-05-19 13:18:50,167 | INFO     | mean y: 2281600.6827586205
[2026-05-19 15:19:43] 2026-05-19 13:18:50,167 | INFO     | intersect: 2281600.6827586205
[2026-05-19 15:19:43] 2026-05-19 13:18:50,168 | INFO     | chi2: 1.728579202618165
[2026-05-19 15:19:43] 2026-05-19 13:18:50,168 | INFO     | current chi2=1.728579202618165 (change=-0.08687452752958101 %)
[2026-05-19 15:19:43] 2026-05-19 13:18:50,168 | INFO     | right removable region: 144
[2026-05-19 15:19:43] 2026-05-19 13:18:50,168 | INFO     | sum of square deviations: 945277960.9931037
[2026-05-19 15:19:43] 2026-05-19 13:18:50,169 | INFO     | sum of deviations: 3239758996.096552
[2026-05-19 15:19:43] 2026-05-19 13:18:50,169 | INFO     | mean x (centered): 0.0
[2026-05-19 15:19:43] 2026-05-19 13:18:50,169 | INFO     | mean y: 2319086.9034482758
[2026-05-19 15:19:43] 2026-05-19 13:18:50,169 | INFO     | intersect: 2319086.9034482758
[2026-05-19 15:19:43] 2026-05-19 13:18:50,170 | INFO     | chi2: 0.010838558492718905
[2026-05-19 15:19:43] 2026-05-19 13:18:50,170 | INFO     | current chi2=0.010838558492718905 (change=99.3724340531941 %)
[2026-05-19 15:19:43] 2026-05-19 13:18:50,170 | INFO     | sum of square deviations: 850820070.9928573
[2026-05-19 15:19:43] 2026-05-19 13:18:50,171 | INFO     | sum of deviations: 1529716110.3357143
[2026-05-19 15:19:43] 2026-05-19 13:18:50,171 | INFO     | mean x (centered): 0.0
[2026-05-19 15:19:43] 2026-05-19 13:18:50,171 | INFO     | mean y: 2321797.1642857143
[2026-05-19 15:19:43] 2026-05-19 13:18:50,171 | INFO     | intersect: 2321797.1642857143
[2026-05-19 15:19:43] 2026-05-19 13:18:50,171 | INFO     | chi2: 0.0003388722978654294
[2026-05-19 15:19:43] 2026-05-19 13:18:50,171 | INFO     | current chi2=0.0003388722978654294 (change=96.87345602191402 %)
[2026-05-19 15:19:43] 2026-05-19 13:18:50,172 | INFO     | sum of square deviations: 762873930.9925944
[2026-05-19 15:19:43] 2026-05-19 13:18:50,172 | INFO     | sum of deviations: 1617021256.4592593
[2026-05-19 15:19:43] 2026-05-19 13:18:50,173 | INFO     | mean x (centered): 0.0
[2026-05-19 15:19:43] 2026-05-19 13:18:50,173 | INFO     | mean y: 2321650.540740741
[2026-05-19 15:19:43] 2026-05-19 13:18:50,173 | INFO     | intersect: 2321650.540740741
[2026-05-19 15:19:43] 2026-05-19 13:18:50,173 | INFO     | chi2: 0.0001253418797245689
[2026-05-19 15:19:43] 2026-05-19 13:18:50,173 | INFO     | current chi2=0.0001253418797245689 (change=63.01206073376237 %)
[2026-05-19 15:19:43] 2026-05-19 13:18:50,173 | INFO     | sum of square deviations: 681206978.4923089
[2026-05-19 15:19:43] 2026-05-19 13:18:50,174 | INFO     | sum of deviations: 1469050563.1230764
[2026-05-19 15:19:43] 2026-05-19 13:18:50,174 | INFO     | mean x (centered): 0.0
[2026-05-19 15:19:43] 2026-05-19 13:18:50,174 | INFO     | mean y: 2321929.376923077
[2026-05-19 15:19:43] 2026-05-19 13:18:50,174 | INFO     | intersect: 2321929.376923077
[2026-05-19 15:19:43] 2026-05-19 13:18:50,175 | INFO     | chi2: 0.00010875029930461247
[2026-05-19 15:19:43] 2026-05-19 13:18:50,175 | INFO     | current chi2=0.00010875029930461247 (change=13.237060475250113 %)
[2026-05-19 15:19:43] 2026-05-19 13:18:50,175 | INFO     | left removable region: 20
[2026-05-19 15:19:43] 2026-05-19 13:18:50,175 | INFO     | sum of square deviations: 591168446.9919349
[2026-05-19 15:19:43] 2026-05-19 13:18:50,176 | INFO     | sum of deviations: 1276264234.991935
[2026-05-19 15:19:43] 2026-05-19 13:18:50,176 | INFO     | mean x (centered): 0.0
[2026-05-19 15:19:43] 2026-05-19 13:18:50,176 | INFO     | mean y: 2321539.5080645164
[2026-05-19 15:19:43] 2026-05-19 13:18:50,176 | INFO     | intersect: 2321539.5080645164
[2026-05-19 15:19:43] 2026-05-19 13:18:50,177 | INFO     | chi2: 0.00010190869538901751
[2026-05-19 15:19:43] 2026-05-19 13:18:50,177 | INFO     | current memory leak: 2.16 B/s (using 124 data points, chi2=0.00)
[2026-05-19 15:19:43] 2026-05-19 13:18:50,178 | INFO     | could have reported an average CPU frequency of 2656 MHz (9 samples)
[2026-05-19 15:19:43] 2026-05-19 13:18:50,178 | INFO     | ..............................
[2026-05-19 15:19:43] 2026-05-19 13:18:50,178 | INFO     | . Timing measurements:
[2026-05-19 15:19:43] 2026-05-19 13:18:50,178 | INFO     | . get job = 0 s
[2026-05-19 15:19:43] 2026-05-19 13:18:50,178 | INFO     | . initial setup = 28 s
[2026-05-19 15:19:43] 2026-05-19 13:18:50,178 | INFO     | . payload setup = 42 s
[2026-05-19 15:19:43] 2026-05-19 13:18:50,178 | INFO     | . stage-in = 0 s
[2026-05-19 15:19:43] 2026-05-19 13:18:50,178 | INFO     | . payload execution = 9143 s
[2026-05-19 15:19:43] 2026-05-19 13:18:50,178 | INFO     | . stage-out = 0 s
[2026-05-19 15:19:43] 2026-05-19 13:18:50,178 | INFO     | . log creation = 0 s
[2026-05-19 15:19:43] 2026-05-19 13:18:50,179 | INFO     | ..............................
[2026-05-19 15:19:43] 2026-05-19 13:18:50,666 | INFO     | 
[2026-05-19 15:19:43] 2026-05-19 13:18:50,667 | INFO     | job summary report
[2026-05-19 15:19:43] 2026-05-19 13:18:50,667 | INFO     | --------------------------------------------------
[2026-05-19 15:19:43] 2026-05-19 13:18:50,667 | INFO     | PanDA job id: 7143405440
[2026-05-19 15:19:43] 2026-05-19 13:18:50,667 | INFO     | task id: 50087083
[2026-05-19 15:19:43] 2026-05-19 13:18:50,667 | INFO     | errors: (none)
[2026-05-19 15:19:43] 2026-05-19 13:18:50,667 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-19 15:19:43] 2026-05-19 13:18:50,667 | INFO     | pilot state: finished 
[2026-05-19 15:19:43] 2026-05-19 13:18:50,667 | INFO     | transexitcode: 0
[2026-05-19 15:19:43] 2026-05-19 13:18:50,667 | INFO     | exeerrorcode: 0
[2026-05-19 15:19:43] 2026-05-19 13:18:50,667 | INFO     | exeerrordiag: 
[2026-05-19 15:19:43] 2026-05-19 13:18:50,667 | INFO     | exitcode: 0
[2026-05-19 15:19:43] 2026-05-19 13:18:50,667 | INFO     | exitmsg: OK
[2026-05-19 15:19:43] 2026-05-19 13:18:50,668 | INFO     | cpuconsumptiontime: 31802 s
[2026-05-19 15:19:43] 2026-05-19 13:18:50,668 | INFO     | nevents: 400
[2026-05-19 15:19:43] 2026-05-19 13:18:50,668 | INFO     | neventsw: 0
[2026-05-19 15:19:43] 2026-05-19 13:18:50,668 | INFO     | pid: 1105870
[2026-05-19 15:19:43] 2026-05-19 13:18:50,668 | INFO     | pgrp: 1105870
[2026-05-19 15:19:43] 2026-05-19 13:18:50,668 | INFO     | corecount: 4
[2026-05-19 15:19:43] 2026-05-19 13:18:50,668 | INFO     | event service: False
[2026-05-19 15:19:43] 2026-05-19 13:18:50,668 | INFO     | sizes: {0: 2265823, 1: 2266134, 2: 2267736, 12: 2267736, 9190: 2296382, 9191: 2305587, 9194: 2305587, 9196: 2305845}
[2026-05-19 15:19:43] 2026-05-19 13:18:50,668 | INFO     | --------------------------------------------------
[2026-05-19 15:19:43] 2026-05-19 13:18:50,668 | INFO     | 
[2026-05-19 15:19:43] 2026-05-19 13:18:50,668 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot32/slots/47
[2026-05-19 15:19:43] 2026-05-19 13:18:50,708 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,708 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,708 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,708 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,708 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,708 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,708 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,709 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,709 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,709 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,709 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,709 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,709 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,709 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,709 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,709 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,709 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,710 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-19 15:19:43] 2026-05-19 13:18:50,710 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,710 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-19 15:19:43] 2026-05-19 13:18:50,710 | INFO     | job 7143405440 has completed (purged errors)
[2026-05-19 15:19:43] 2026-05-19 13:18:50,710 | INFO     | overall cleanup function is called
[2026-05-19 15:19:43] 2026-05-19 13:18:51,720 | INFO     | --- collectZombieJob: --- 10, [1105870]
[2026-05-19 15:19:43] 2026-05-19 13:18:51,721 | INFO     | zombie collector waiting for pid 1105870
[2026-05-19 15:19:43] 2026-05-19 13:18:51,721 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-19 15:19:43] 2026-05-19 13:18:51,721 | INFO     | collected zombie processes
[2026-05-19 15:19:43] 2026-05-19 13:18:51,721 | INFO     | will attempt to kill all subprocesses of pid=1105870
[2026-05-19 15:19:43] 2026-05-19 13:18:52,400 | INFO     | process IDs to be killed: [1105870] (in reverse order)
[2026-05-19 15:19:43] 2026-05-19 13:18:52,742 | WARNING  | found no corresponding commands to process id(s)
[2026-05-19 15:19:43] 2026-05-19 13:18:52,743 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-19 15:19:43] 2026-05-19 13:18:52,775 | INFO     | did not find any defunct processes belonging to 1105870
[2026-05-19 15:19:43] 2026-05-19 13:18:52,807 | INFO     | did not find any defunct processes belonging to 1105870
[2026-05-19 15:19:43] 2026-05-19 13:18:52,807 | INFO     | Ready for new job
[2026-05-19 15:19:43] 2026-05-19 13:18:52,809 | INFO     | ***************************************
[2026-05-19 15:19:43] 2026-05-19 13:18:52,810 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-19 15:19:43] 2026-05-19 13:18:52,810 | INFO     | ***************************************
[2026-05-19 15:19:43] 2026-05-19 13:18:52,810 | INFO     | 
[2026-05-19 15:19:43] 2026-05-19 13:18:52,818 | INFO     | architecture information:
[2026-05-19 15:19:43] 2026-05-19 13:18:52,819 | INFO     | executing command: cat /etc/os-release
[2026-05-19 15:19:43] 2026-05-19 13:18:52,847 | INFO     | cat /etc/os-release:
[2026-05-19 15:19:43] NAME="CentOS Linux"
[2026-05-19 15:19:43] VERSION="7 (Core)"
[2026-05-19 15:19:43] ID="centos"
[2026-05-19 15:19:43] ID_LIKE="rhel fedora"
[2026-05-19 15:19:43] VERSION_ID="7"
[2026-05-19 15:19:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-19 15:19:43] ANSI_COLOR="0;31"
[2026-05-19 15:19:43] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-19 15:19:43] HOME_URL="https://www.centos.org/"
[2026-05-19 15:19:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-19 15:19:43] 
[2026-05-19 15:19:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-19 15:19:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-19 15:19:43] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-19 15:19:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-19 15:19:43] 
[2026-05-19 15:19:43] 2026-05-19 13:18:52,848 | INFO     | ***************************************
[2026-05-19 15:19:43] 2026-05-19 13:18:53,351 | INFO     | executing command: df -mP /var/lib/boinc/var/slot32/slots/47
[2026-05-19 15:19:43] 2026-05-19 13:18:53,380 | INFO     | sufficient remaining disk space (106935877632 B)
[2026-05-19 15:19:43] 2026-05-19 13:18:53,380 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-19 15:19:43] 2026-05-19 13:18:53,381 | INFO     | current server update state: UPDATING_FINAL
[2026-05-19 15:19:43] 2026-05-19 13:18:53,381 | INFO     | update_server=False
[2026-05-19 15:19:43] 2026-05-19 13:18:53,381 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-19 15:19:43] 2026-05-19 13:18:53,479 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-19 15:19:43] 2026-05-19 13:18:53,890 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-19 15:19:43] 2026-05-19 13:18:53,891 | INFO     | aborting loop
[2026-05-19 15:19:43] 2026-05-19 13:18:53,991 | INFO     | all data control threads have been joined
[2026-05-19 15:19:43] 2026-05-19 13:18:54,196 | INFO     | all job control threads have been joined
[2026-05-19 15:19:43] 2026-05-19 13:18:54,385 | INFO     | [job] retrieve thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:54,458 | INFO     | [payload] execute_payloads thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:54,463 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-19 15:19:43] 2026-05-19 13:18:54,513 | INFO     | all payload control threads have been joined
[2026-05-19 15:19:43] 2026-05-19 13:18:54,614 | INFO     | [payload] failed_post thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:54,871 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:54,895 | INFO     | [job] job monitor thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:54,996 | INFO     | [data] control thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:55,010 | INFO     | [job] validate thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:55,034 | INFO     | [data] copytool_in thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:55,141 | INFO     | [payload] validate_pre thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:55,155 | INFO     | [payload] validate_post thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:55,201 | INFO     | [job] control thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:55,289 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-19 15:19:43] 2026-05-19 13:18:55,484 | INFO     | [data] copytool_out thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:55,519 | INFO     | [payload] control thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:55,792 | INFO     | [job] create_data_payload thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:56,294 | INFO     | [job] queue monitor thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:18:58,469 | INFO     | [data] queue_monitor thread has finished
[2026-05-19 15:19:43] 2026-05-19 13:19:24,742 | INFO     | PID=1099120 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-19 15:19:43] 2026-05-19 13:19:24,743 | INFO     | .. there are 25 such processes running
[2026-05-19 15:19:43] 2026-05-19 13:19:24,743 | INFO     | found 0 job(s) in 20 queues
[2026-05-19 15:19:43] 2026-05-19 13:19:24,743 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-19 15:19:43] 2026-05-19 13:19:24,743 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-19 15:19:43] 2026-05-19 13:19:36,349 | INFO     | [monitor] cgroup control has ended
[2026-05-19 15:19:43] 2026-05-19 13:19:37,571 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22412749764416)>', '<ExcThread(monitor, started 22412516411136)>']
[2026-05-19 15:19:43] 2026-05-19 13:19:37,808 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-19 15:19:43] 2026-05-19 13:19:37,808 | INFO     | [monitor] control thread has ended
[2026-05-19 15:19:43] 2026-05-19 13:19:42,596 | INFO     | all workflow threads have been joined
[2026-05-19 15:19:43] 2026-05-19 13:19:42,597 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-19 15:19:43] 2026-05-19 13:19:42,597 | INFO     | traces error code: 0
[2026-05-19 15:19:43] 2026-05-19 13:19:42,597 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-19 15:19:43] 2026-05-19 13:19:42,860 [wrapper] ==== pilot stdout END ====
[2026-05-19 15:19:43] 2026-05-19 13:19:42,864 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-19 15:19:43] 2026-05-19 13:19:42,867 [wrapper] pilotpid: 1099120
[2026-05-19 15:19:43] 2026-05-19 13:19:42,872 [wrapper] Pilot exit status: 0
[2026-05-19 15:19:43] 2026-05-19 13:19:42,889 [wrapper] pandaids: 7143405440
[2026-05-19 15:19:43] 2026-05-19 13:19:43,098 [wrapper] cleanup supervisor_pilot 1550681 1099121
[2026-05-19 15:19:43] 2026-05-19 13:19:43,103 [wrapper] Test setup, not cleaning
[2026-05-19 15:19:43] 2026-05-19 13:19:43,110 [wrapper] apfmon messages muted
[2026-05-19 15:19:43] 2026-05-19 13:19:43,114 [wrapper] ==== wrapper stdout END ====
[2026-05-19 15:19:43] 2026-05-19 13:19:43,118 [wrapper] ==== wrapper stderr END ====
[2026-05-19 15:19:43]  *** Error codes and diagnostics ***
[2026-05-19 15:19:43]     "exeErrorCode": 0,
[2026-05-19 15:19:43]     "pilotErrorCode": 0,
[2026-05-19 15:19:43]  *** Listing of results directory ***
[2026-05-19 15:19:43] total 1132560
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc    683926 May 18 16:51 pilot3.tar.gz
[2026-05-19 15:19:43] -rwx------. 1 boinc boinc     36281 May 18 16:54 runpilot2-wrapper.sh
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc      5631 May 18 16:56 queuedata.json
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc       100 May 19 11:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-19 15:19:43] -rwxr-xr-x. 1 boinc boinc      7986 May 19 11:42 run_atlas
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc       105 May 19 11:42 job.xml
[2026-05-19 15:19:43] -rw-r--r--. 2 boinc boinc 994291466 May 19 12:43 EVNT.46375503._000195.pool.root.1
[2026-05-19 15:19:43] -rw-r--r--. 2 boinc boinc     15667 May 19 12:43 start_atlas.sh
[2026-05-19 15:19:43] drwxrwx--x. 2 boinc boinc      4096 May 19 12:43 shared
[2026-05-19 15:19:43] -rw-r--r--. 2 boinc boinc    697437 May 19 12:43 input.tar.gz
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc         0 May 19 12:43 boinc_lockfile
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc      2600 May 19 12:43 pandaJob.out
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc      6538 May 19 12:44 init_data.xml
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc    998542 May 19 12:44 agis_schedconf.cvmfs.json
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc   1502787 May 19 12:44 agis_ddmendpoints.agis.ALL.json
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc       440 May 19 12:45 workernode_map.json
[2026-05-19 15:19:43] drwx------. 5 boinc boinc      4096 May 19 12:45 pilot3
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc       488 May 19 15:18 boinc_task_state.xml
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc 158803982 May 19 15:18 HITS.50087083._025384.pool.root.1
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc        95 May 19 15:18 pilot_heartbeat.json
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc      1040 May 19 15:18 memory_monitor_summary.json
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc    404430 May 19 15:18 log.50087083._025384.job.log.tgz.1
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc      6380 May 19 15:18 heartbeat_new.json
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc      6271 May 19 15:18 heartbeat.json
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc      8192 May 19 15:19 boinc_mmap_file
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc        27 May 19 15:19 wrapper_checkpoint.txt
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc      4834 May 19 15:19 pilotlog.txt
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc    854589 May 19 15:19 log.50087083._025384.job.log.1
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc       357 May 19 15:19 output.list
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc       410 May 19 15:19 runtime_log
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc   1280000 May 19 15:19 result.tar.gz
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc      8844 May 19 15:19 runtime_log.err
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc       663 May 19 15:19 2825aa20fcbe.diag
[2026-05-19 15:19:43] -rw-r--r--. 1 boinc boinc     20647 May 19 15:19 stderr.txt
[2026-05-19 15:19:43] HITS file was successfully produced:
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc 158803982 May 19 15:18 shared/HITS.pool.root.1
[2026-05-19 15:19:43]  *** Contents of shared directory: ***
[2026-05-19 15:19:43] total 1128032
[2026-05-19 15:19:43] -rw-r--r--. 2 boinc boinc 994291466 May 19 12:43 ATLAS.root_0
[2026-05-19 15:19:43] -rw-r--r--. 2 boinc boinc     15667 May 19 12:43 start_atlas.sh
[2026-05-19 15:19:43] -rw-r--r--. 2 boinc boinc    697437 May 19 12:43 input.tar.gz
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc 158803982 May 19 15:18 HITS.pool.root.1
[2026-05-19 15:19:43] -rw-------. 1 boinc boinc   1280000 May 19 15:19 result.tar.gz
15:19:44 (1093837): run_atlas exited; CPU time 32320.904160
15:19:44 (1093837): called boinc_finish(0)

</stderr_txt>
]]>

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