Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:22:12 (4297): wrapper (7.7.26015): starting
14:22:12 (4297): wrapper: running run_atlas (--nthreads 8)
[2026-05-17 14:22:12] Arguments: --nthreads 8
[2026-05-17 14:22:12] Threads: 8
[2026-05-17 14:22:12] Checking for CVMFS
[2026-05-17 14:22:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-17 14:22:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-17 14:22:13] Running cvmfs_config stat atlas.cern.ch
[2026-05-17 14:22:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-17 14:22:13] 2.11.2.0 21570 45831 100988 159606 2 102 22282513 25165824 352 130560 0 25588918 99.923 6003516 7559 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-17 14:22:13] CVMFS is ok
[2026-05-17 14:22:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-17 14:22:13] Checking for apptainer binary...
[2026-05-17 14:22:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-17 14:22:13] Running /usr/bin/apptainer --version
[2026-05-17 14:22:13] apptainer version 1.3.2-1.el7
[2026-05-17 14:22:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-17 14:22:14] cg-vwn322.simple-grid.lan
[2026-05-17 14:22:14] apptainer works
[2026-05-17 14:22:15] Set ATHENA_PROC_NUMBER=8
[2026-05-17 14:22:15] Set ATHENA_CORE_NUMBER=8
[2026-05-17 14:22:15] Starting ATLAS job with PandaID=7142224463
[2026-05-17 14:22:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-17 17:42:10]  *** The last 200 lines of the pilot log: ***
[2026-05-17 17:42:10] 2026-05-17 15:41:09,958 | INFO     | this job has now completed (state=finished)
[2026-05-17 17:42:10] 2026-05-17 15:41:09,958 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-17 17:42:10] 2026-05-17 15:41:09,958 | INFO     | log transfer has been attempted: DONE
[2026-05-17 17:42:10] 2026-05-17 15:41:09,958 | INFO     | job 7142224463 has finished - writing final server update
[2026-05-17 17:42:10] 2026-05-17 15:41:09,959 | INFO     | total number of processed events: 400 (read)
[2026-05-17 17:42:10] 2026-05-17 15:41:09,961 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7142224463/memory_monitor_summary.json (trf name=prmon)
[2026-05-17 17:42:10] 2026-05-17 15:41:09,961 | INFO     | extracted standard info from prmon json
[2026-05-17 17:42:10] 2026-05-17 15:41:09,962 | INFO     | extracted standard memory fields from prmon json
[2026-05-17 17:42:10] 2026-05-17 15:41:09,962 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-17 17:42:10] 2026-05-17 15:41:09,962 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-17 17:42:10] 2026-05-17 15:41:09,966 | INFO     | fitting pss+swap vs Time
[2026-05-17 17:42:10] 2026-05-17 15:41:09,967 | INFO     | sum of square deviations: 2299168690.0
[2026-05-17 17:42:10] 2026-05-17 15:41:09,969 | INFO     | sum of deviations: -36204345520.99999
[2026-05-17 17:42:10] 2026-05-17 15:41:09,969 | INFO     | mean x (centered): 0.0
[2026-05-17 17:42:10] 2026-05-17 15:41:09,969 | INFO     | mean y: 2530872.358974359
[2026-05-17 17:42:10] 2026-05-17 15:41:09,969 | INFO     | intersect: 2530872.358974359
[2026-05-17 17:42:10] 2026-05-17 15:41:09,970 | INFO     | chi2: 2.541266973477942
[2026-05-17 17:42:10] 2026-05-17 15:41:09,970 | INFO     | sum of square deviations: 2126802667.5
[2026-05-17 17:42:10] 2026-05-17 15:41:09,972 | INFO     | sum of deviations: -21950464693.500004
[2026-05-17 17:42:10] 2026-05-17 15:41:09,972 | INFO     | mean x (centered): 0.0
[2026-05-17 17:42:10] 2026-05-17 15:41:09,972 | INFO     | mean y: 2543246.9736842103
[2026-05-17 17:42:10] 2026-05-17 15:41:09,972 | INFO     | intersect: 2543246.9736842103
[2026-05-17 17:42:10] 2026-05-17 15:41:09,976 | INFO     | chi2: 1.7746319107859532
[2026-05-17 17:42:10] 2026-05-17 15:41:09,976 | INFO     | current chi2=1.7746319107859532 (change=30.167435011473152 %)
[2026-05-17 17:42:10] 2026-05-17 15:41:09,976 | INFO     | sum of square deviations: 1963274020.0
[2026-05-17 17:42:10] 2026-05-17 15:41:09,978 | INFO     | sum of deviations: -20802428254.000004
[2026-05-17 17:42:10] 2026-05-17 15:41:09,978 | INFO     | mean x (centered): 0.0
[2026-05-17 17:42:10] 2026-05-17 15:41:09,978 | INFO     | mean y: 2544317.8324324326
[2026-05-17 17:42:10] 2026-05-17 15:41:09,978 | INFO     | intersect: 2544317.8324324326
[2026-05-17 17:42:10] 2026-05-17 15:41:09,979 | INFO     | chi2: 1.7730215118707724
[2026-05-17 17:42:10] 2026-05-17 15:41:09,979 | INFO     | current chi2=1.7730215118707724 (change=0.09074551772640897 %)
[2026-05-17 17:42:10] 2026-05-17 15:41:09,979 | INFO     | right removable region: 184
[2026-05-17 17:42:10] 2026-05-17 15:41:09,979 | INFO     | sum of square deviations: 2126802667.5
[2026-05-17 17:42:10] 2026-05-17 15:41:09,981 | INFO     | sum of deviations: -66926272427.0
[2026-05-17 17:42:10] 2026-05-17 15:41:09,981 | INFO     | mean x (centered): 0.0
[2026-05-17 17:42:10] 2026-05-17 15:41:09,981 | INFO     | mean y: 2557735.389473684
[2026-05-17 17:42:10] 2026-05-17 15:41:09,981 | INFO     | intersect: 2557735.389473684
[2026-05-17 17:42:10] 2026-05-17 15:41:09,982 | INFO     | chi2: 0.989536825036067
[2026-05-17 17:42:10] 2026-05-17 15:41:09,982 | INFO     | current chi2=0.989536825036067 (change=61.06128024471978 %)
[2026-05-17 17:42:10] 2026-05-17 15:41:09,982 | INFO     | sum of square deviations: 1963274020.0
[2026-05-17 17:42:10] 2026-05-17 15:41:09,984 | INFO     | sum of deviations: -63786287362.0
[2026-05-17 17:42:10] 2026-05-17 15:41:09,984 | INFO     | mean x (centered): 0.0
[2026-05-17 17:42:10] 2026-05-17 15:41:09,984 | INFO     | mean y: 2554766.9135135133
[2026-05-17 17:42:10] 2026-05-17 15:41:09,984 | INFO     | intersect: 2554766.9135135133
[2026-05-17 17:42:10] 2026-05-17 15:41:09,985 | INFO     | chi2: 0.9781493966597945
[2026-05-17 17:42:10] 2026-05-17 15:41:09,985 | INFO     | current chi2=0.9781493966597945 (change=1.1507836887078393 %)
[2026-05-17 17:42:10] 2026-05-17 15:41:09,985 | INFO     | left removable region: 10
[2026-05-17 17:42:10] 2026-05-17 15:41:09,985 | INFO     | sum of square deviations: 1633472487.5
[2026-05-17 17:42:10] 2026-05-17 15:41:09,987 | INFO     | sum of deviations: -47438571408.50001
[2026-05-17 17:42:10] 2026-05-17 15:41:09,987 | INFO     | mean x (centered): 0.0
[2026-05-17 17:42:10] 2026-05-17 15:41:09,987 | INFO     | mean y: 2570729.6494252873
[2026-05-17 17:42:10] 2026-05-17 15:41:09,987 | INFO     | intersect: 2570729.6494252873
[2026-05-17 17:42:10] 2026-05-17 15:41:09,987 | INFO     | chi2: 0.17475595085069245
[2026-05-17 17:42:10] 2026-05-17 15:41:09,988 | INFO     | current memory leak: -29.04 B/s (using 174 data points, chi2=0.17)
[2026-05-17 17:42:10] 2026-05-17 15:41:09,988 | INFO     | could have reported an average CPU frequency of 1999 MHz (10 samples)
[2026-05-17 17:42:10] 2026-05-17 15:41:09,988 | INFO     | ..............................
[2026-05-17 17:42:10] 2026-05-17 15:41:09,989 | INFO     | . Timing measurements:
[2026-05-17 17:42:10] 2026-05-17 15:41:09,989 | INFO     | . get job = 0 s
[2026-05-17 17:42:10] 2026-05-17 15:41:09,989 | INFO     | . initial setup = 7 s
[2026-05-17 17:42:10] 2026-05-17 15:41:09,989 | INFO     | . payload setup = 16 s
[2026-05-17 17:42:10] 2026-05-17 15:41:09,989 | INFO     | . stage-in = 0 s
[2026-05-17 17:42:10] 2026-05-17 15:41:09,989 | INFO     | . payload execution = 11873 s
[2026-05-17 17:42:10] 2026-05-17 15:41:09,989 | INFO     | . stage-out = 3 s
[2026-05-17 17:42:10] 2026-05-17 15:41:09,989 | INFO     | . log creation = 1 s
[2026-05-17 17:42:10] 2026-05-17 15:41:09,989 | INFO     | ..............................
[2026-05-17 17:42:10] 2026-05-17 15:41:10,126 | INFO     | 
[2026-05-17 17:42:10] 2026-05-17 15:41:10,127 | INFO     | job summary report
[2026-05-17 17:42:10] 2026-05-17 15:41:10,127 | INFO     | --------------------------------------------------
[2026-05-17 17:42:10] 2026-05-17 15:41:10,127 | INFO     | PanDA job id: 7142224463
[2026-05-17 17:42:10] 2026-05-17 15:41:10,127 | INFO     | task id: 50087083
[2026-05-17 17:42:10] 2026-05-17 15:41:10,127 | INFO     | errors: (none)
[2026-05-17 17:42:10] 2026-05-17 15:41:10,127 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-17 17:42:10] 2026-05-17 15:41:10,127 | INFO     | pilot state: finished 
[2026-05-17 17:42:10] 2026-05-17 15:41:10,127 | INFO     | transexitcode: 0
[2026-05-17 17:42:10] 2026-05-17 15:41:10,128 | INFO     | exeerrorcode: 0
[2026-05-17 17:42:10] 2026-05-17 15:41:10,128 | INFO     | exeerrordiag: 
[2026-05-17 17:42:10] 2026-05-17 15:41:10,128 | INFO     | exitcode: 0
[2026-05-17 17:42:10] 2026-05-17 15:41:10,128 | INFO     | exitmsg: OK
[2026-05-17 17:42:10] 2026-05-17 15:41:10,128 | INFO     | cpuconsumptiontime: 49522 s
[2026-05-17 17:42:10] 2026-05-17 15:41:10,128 | INFO     | nevents: 400
[2026-05-17 17:42:10] 2026-05-17 15:41:10,128 | INFO     | neventsw: 0
[2026-05-17 17:42:10] 2026-05-17 15:41:10,128 | INFO     | pid: 13130
[2026-05-17 17:42:10] 2026-05-17 15:41:10,128 | INFO     | pgrp: 13130
[2026-05-17 17:42:10] 2026-05-17 15:41:10,129 | INFO     | corecount: 8
[2026-05-17 17:42:10] 2026-05-17 15:41:10,129 | INFO     | event service: False
[2026-05-17 17:42:10] 2026-05-17 15:41:10,129 | INFO     | sizes: {0: 2266090, 1: 2267518, 11: 2267546, 11893: 2297080, 11894: 2297079, 11898: 2306345, 11899: 2306483}
[2026-05-17 17:42:10] 2026-05-17 15:41:10,129 | INFO     | --------------------------------------------------
[2026-05-17 17:42:10] 2026-05-17 15:41:10,135 | INFO     | 
[2026-05-17 17:42:10] 2026-05-17 15:41:10,136 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-05-17 17:42:10] 2026-05-17 15:41:10,522 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,522 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,523 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,523 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,523 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,523 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,523 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,523 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,523 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,523 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,524 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,524 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,524 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,524 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,524 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,524 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,524 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,524 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-17 17:42:10] 2026-05-17 15:41:10,524 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,525 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-17 17:42:10] 2026-05-17 15:41:10,525 | INFO     | job 7142224463 has completed (purged errors)
[2026-05-17 17:42:10] 2026-05-17 15:41:10,525 | INFO     | overall cleanup function is called
[2026-05-17 17:42:10] 2026-05-17 15:41:11,534 | INFO     | --- collectZombieJob: --- 10, [13130]
[2026-05-17 17:42:10] 2026-05-17 15:41:11,535 | INFO     | zombie collector waiting for pid 13130
[2026-05-17 17:42:10] 2026-05-17 15:41:11,535 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-17 17:42:10] 2026-05-17 15:41:11,535 | INFO     | collected zombie processes
[2026-05-17 17:42:10] 2026-05-17 15:41:11,535 | INFO     | will attempt to kill all subprocesses of pid=13130
[2026-05-17 17:42:10] 2026-05-17 15:41:11,589 | INFO     | process IDs to be killed: [13130] (in reverse order)
[2026-05-17 17:42:10] 2026-05-17 15:41:11,945 | WARNING  | found no corresponding commands to process id(s)
[2026-05-17 17:42:10] 2026-05-17 15:41:11,945 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-17 17:42:10] 2026-05-17 15:41:11,948 | INFO     | did not find any defunct processes belonging to 13130
[2026-05-17 17:42:10] 2026-05-17 15:41:11,949 | INFO     | did not find any defunct processes belonging to 13130
[2026-05-17 17:42:10] 2026-05-17 15:41:11,950 | INFO     | Ready for new job
[2026-05-17 17:42:10] 2026-05-17 15:41:11,951 | INFO     | ***************************************
[2026-05-17 17:42:10] 2026-05-17 15:41:11,951 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-17 17:42:10] 2026-05-17 15:41:11,951 | INFO     | ***************************************
[2026-05-17 17:42:10] 2026-05-17 15:41:11,951 | INFO     | 
[2026-05-17 17:42:10] 2026-05-17 15:41:11,952 | INFO     | pilot is running in a VM
[2026-05-17 17:42:10] 2026-05-17 15:41:11,952 | INFO     | architecture information:
[2026-05-17 17:42:10] 2026-05-17 15:41:11,959 | INFO     | executing command: cat /etc/os-release
[2026-05-17 17:42:10] 2026-05-17 15:41:12,245 | INFO     | cat /etc/os-release:
[2026-05-17 17:42:10] NAME="CentOS Linux"
[2026-05-17 17:42:10] VERSION="7 (Core)"
[2026-05-17 17:42:10] ID="centos"
[2026-05-17 17:42:10] ID_LIKE="rhel fedora"
[2026-05-17 17:42:10] VERSION_ID="7"
[2026-05-17 17:42:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-17 17:42:10] ANSI_COLOR="0;31"
[2026-05-17 17:42:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-17 17:42:10] HOME_URL="https://www.centos.org/"
[2026-05-17 17:42:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-17 17:42:10] 
[2026-05-17 17:42:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-17 17:42:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-17 17:42:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-17 17:42:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-17 17:42:10] 
[2026-05-17 17:42:10] 2026-05-17 15:41:12,245 | INFO     | ***************************************
[2026-05-17 17:42:10] 2026-05-17 15:41:12,748 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-05-17 17:42:10] 2026-05-17 15:41:13,001 | INFO     | sufficient remaining disk space (494904803328 B)
[2026-05-17 17:42:10] 2026-05-17 15:41:13,001 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-17 17:42:10] 2026-05-17 15:41:13,001 | INFO     | current server update state: UPDATING_FINAL
[2026-05-17 17:42:10] 2026-05-17 15:41:13,002 | INFO     | update_server=False
[2026-05-17 17:42:10] 2026-05-17 15:41:13,002 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-17 17:42:10] 2026-05-17 15:41:13,075 | INFO     | all job control threads have been joined
[2026-05-17 17:42:10] 2026-05-17 15:41:13,272 | INFO     | all payload control threads have been joined
[2026-05-17 17:42:10] 2026-05-17 15:41:13,726 | INFO     | all data control threads have been joined
[2026-05-17 17:42:10] 2026-05-17 15:41:13,737 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-17 17:42:10] 2026-05-17 15:41:13,738 | INFO     | aborting loop
[2026-05-17 17:42:10] 2026-05-17 15:41:14,007 | INFO     | [job] retrieve thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:14,017 | INFO     | [payload] validate_post thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:14,081 | INFO     | [job] control thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:14,162 | INFO     | [payload] validate_pre thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:14,278 | INFO     | [payload] control thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:14,461 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-17 17:42:10] 2026-05-17 15:41:14,623 | INFO     | [job] validate thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:14,732 | INFO     | [data] control thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:14,743 | INFO     | [job] job monitor thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:14,788 | INFO     | [payload] failed_post thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:14,798 | INFO     | [payload] execute_payloads thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:15,099 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-17 17:42:10] 2026-05-17 15:41:15,142 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-17 17:42:10] 2026-05-17 15:41:15,148 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:15,396 | INFO     | [job] create_data_payload thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:15,429 | INFO     | [data] copytool_in thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:16,148 | INFO     | [job] queue monitor thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:16,468 | INFO     | [data] copytool_out thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:19,108 | INFO     | [data] queue_monitor thread has finished
[2026-05-17 17:42:10] 2026-05-17 15:41:43,376 | INFO     | PID=8453 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-05-17 17:42:10] 2026-05-17 15:41:43,376 | INFO     | .. there are 2 such processes running
[2026-05-17 17:42:10] 2026-05-17 15:41:43,381 | INFO     | found 0 job(s) in 20 queues
[2026-05-17 17:42:10] 2026-05-17 15:41:43,381 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-17 17:42:10] 2026-05-17 15:41:43,382 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-17 17:42:10] 2026-05-17 15:41:59,802 | INFO     | [monitor] cgroup control has ended
[2026-05-17 17:42:10] 2026-05-17 15:42:00,223 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139798997423936)>', '<ExcThread(monitor, started 139798392055552)>']
[2026-05-17 17:42:10] 2026-05-17 15:42:00,483 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-17 17:42:10] 2026-05-17 15:42:00,483 | INFO     | [monitor] control thread has ended
[2026-05-17 17:42:10] 2026-05-17 15:42:05,249 | INFO     | all workflow threads have been joined
[2026-05-17 17:42:10] 2026-05-17 15:42:05,249 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-17 17:42:10] 2026-05-17 15:42:05,250 | INFO     | traces error code: 0
[2026-05-17 17:42:10] 2026-05-17 15:42:05,250 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-17 17:42:10] 2026-05-17 15:42:05,717 [wrapper] ==== pilot stdout END ====
[2026-05-17 17:42:10] 2026-05-17 15:42:05,763 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-17 17:42:10] 2026-05-17 15:42:05,867 [wrapper] pilotpid: 8453
[2026-05-17 17:42:10] 2026-05-17 15:42:05,997 [wrapper] Pilot exit status: 0
[2026-05-17 17:42:10] 2026-05-17 15:42:06,434 [wrapper] pandaids: 7142224463
[2026-05-17 17:42:10] 2026-05-17 15:42:07,625 [wrapper] cleanup supervisor_pilot 32037 8454
[2026-05-17 17:42:10] 2026-05-17 15:42:07,704 [wrapper] Test setup, not cleaning
[2026-05-17 17:42:10] 2026-05-17 15:42:07,842 [wrapper] apfmon messages muted
[2026-05-17 17:42:10] 2026-05-17 15:42:07,994 [wrapper] ==== wrapper stdout END ====
[2026-05-17 17:42:10] 2026-05-17 15:42:08,115 [wrapper] ==== wrapper stderr END ====
[2026-05-17 17:42:10]  *** Error codes and diagnostics ***
[2026-05-17 17:42:10]     "exeErrorCode": 0,
[2026-05-17 17:42:10]     "pilotErrorCode": 0,
[2026-05-17 17:42:10]  *** Listing of results directory ***
[2026-05-17 17:42:10] total 1131132
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc    683926 May 17 11:18 pilot3.tar.gz
[2026-05-17 17:42:10] -rwx------. 1 boinc boinc     36281 May 17 11:21 runpilot2-wrapper.sh
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc      5631 May 17 11:22 queuedata.json
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc       100 May 17 14:22 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-17 17:42:10] -rwxr-xr-x. 1 boinc boinc      7986 May 17 14:22 run_atlas
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc       105 May 17 14:22 job.xml
[2026-05-17 17:42:10] -rw-r--r--. 2 boinc boinc 985542984 May 17 14:22 EVNT.46375503._000118.pool.root.1
[2026-05-17 17:42:10] -rw-r--r--. 2 boinc boinc    697434 May 17 14:22 input.tar.gz
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc      6305 May 17 14:22 init_data.xml
[2026-05-17 17:42:10] -rw-r--r--. 2 boinc boinc     15667 May 17 14:22 start_atlas.sh
[2026-05-17 17:42:10] drwxrwx--x. 2 boinc boinc        68 May 17 14:22 shared
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc         0 May 17 14:22 boinc_lockfile
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc      2600 May 17 14:22 pandaJob.out
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc    993473 May 17 14:22 agis_schedconf.cvmfs.json
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc       415 May 17 14:22 workernode_map.json
[2026-05-17 17:42:10] drwx------. 5 boinc boinc      4096 May 17 14:22 pilot3
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc 165509450 May 17 17:39 HITS.50087083._014840.pool.root.1
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc       489 May 17 17:40 boinc_task_state.xml
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc      1020 May 17 17:41 memory_monitor_summary.json
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc   1502367 May 17 17:41 agis_ddmendpoints.agis.ALL.json
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc    452301 May 17 17:41 log.50087083._014840.job.log.tgz.1
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc      6350 May 17 17:41 heartbeat_new.json
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc      6241 May 17 17:41 heartbeat.json
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc        95 May 17 17:41 pilot_heartbeat.json
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc        28 May 17 17:41 wrapper_checkpoint.txt
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc      8192 May 17 17:41 boinc_mmap_file
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc      4882 May 17 17:42 pilotlog.txt
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc   1109700 May 17 17:42 log.50087083._014840.job.log.1
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc       357 May 17 17:42 output.list
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc       410 May 17 17:42 runtime_log
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc   1576960 May 17 17:42 result.tar.gz
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc      8439 May 17 17:42 runtime_log.err
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc       655 May 17 17:42 888b308d2649.diag
[2026-05-17 17:42:10] -rw-r--r--. 1 boinc boinc     20634 May 17 17:42 stderr.txt
[2026-05-17 17:42:10] HITS file was successfully produced:
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc 165509450 May 17 17:39 shared/HITS.pool.root.1
[2026-05-17 17:42:10]  *** Contents of shared directory: ***
[2026-05-17 17:42:10] total 1126320
[2026-05-17 17:42:10] -rw-r--r--. 2 boinc boinc 985542984 May 17 14:22 ATLAS.root_0
[2026-05-17 17:42:10] -rw-r--r--. 2 boinc boinc    697434 May 17 14:22 input.tar.gz
[2026-05-17 17:42:10] -rw-r--r--. 2 boinc boinc     15667 May 17 14:22 start_atlas.sh
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc 165509450 May 17 17:39 HITS.pool.root.1
[2026-05-17 17:42:10] -rw-------. 1 boinc boinc   1576960 May 17 17:42 result.tar.gz
17:42:12 (4297): run_atlas exited; CPU time 49618.526332
17:42:12 (4297): called boinc_finish(0)

</stderr_txt>
]]>

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