Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:49:13 (28368): wrapper (7.7.26015): starting
03:49:13 (28368): wrapper: running run_atlas (--nthreads 8)
[2026-05-17 03:49:13] Arguments: --nthreads 8
[2026-05-17 03:49:13] Threads: 8
[2026-05-17 03:49:13] Checking for CVMFS
[2026-05-17 03:49:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-17 03:49:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-17 03:49:18] Running cvmfs_config stat atlas.cern.ch
[2026-05-17 03:49:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-17 03:49:19] 2.11.2.0 8887 45183 125392 159591 2 53 24566548 25165825 96 130560 0 89147354 99.959 18617492 14032 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-17 03:49:19] CVMFS is ok
[2026-05-17 03:49:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-17 03:49:19] Checking for apptainer binary...
[2026-05-17 03:49:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-17 03:49:19] Running /usr/bin/apptainer --version
[2026-05-17 03:49:19] apptainer version 1.3.2-1.el7
[2026-05-17 03:49:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-17 03:49:45] cg-vwn308.simple-grid.lan
[2026-05-17 03:49:45] apptainer works
[2026-05-17 03:49:45] Set ATHENA_PROC_NUMBER=8
[2026-05-17 03:49:45] Set ATHENA_CORE_NUMBER=8
[2026-05-17 03:49:45] Starting ATLAS job with PandaID=7138611215
[2026-05-17 03:49:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-17 07:13:34]  *** The last 200 lines of the pilot log: ***
[2026-05-17 07:13:34] 2026-05-17 05:12:37,947 | INFO     | this job has now completed (state=finished)
[2026-05-17 07:13:34] 2026-05-17 05:12:37,947 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-17 07:13:34] 2026-05-17 05:12:37,947 | INFO     | log transfer has been attempted: DONE
[2026-05-17 07:13:34] 2026-05-17 05:12:37,947 | INFO     | job 7138611215 has finished - writing final server update
[2026-05-17 07:13:34] 2026-05-17 05:12:37,948 | INFO     | total number of processed events: 400 (read)
[2026-05-17 07:13:34] 2026-05-17 05:12:37,950 | INFO     | using path: /var/lib/boinc/slots/7/PanDA_Pilot-7138611215/memory_monitor_summary.json (trf name=prmon)
[2026-05-17 07:13:34] 2026-05-17 05:12:37,951 | INFO     | extracted standard info from prmon json
[2026-05-17 07:13:34] 2026-05-17 05:12:37,951 | INFO     | extracted standard memory fields from prmon json
[2026-05-17 07:13:34] 2026-05-17 05:12:37,951 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-17 07:13:34] 2026-05-17 05:12:37,952 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-17 07:13:34] 2026-05-17 05:12:37,956 | INFO     | fitting pss+swap vs Time
[2026-05-17 07:13:34] 2026-05-17 05:12:37,957 | INFO     | sum of square deviations: 2060343747.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,959 | INFO     | sum of deviations: 118602443899.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,959 | INFO     | mean x (centered): 0.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,959 | INFO     | mean y: 2358851.0212765955
[2026-05-17 07:13:34] 2026-05-17 05:12:37,959 | INFO     | intersect: 2358851.0212765955
[2026-05-17 07:13:34] 2026-05-17 05:12:37,959 | INFO     | chi2: 9.685869370573908
[2026-05-17 07:13:34] 2026-05-17 05:12:37,960 | INFO     | sum of square deviations: 1900284932.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,961 | INFO     | sum of deviations: 127583591872.99998
[2026-05-17 07:13:34] 2026-05-17 05:12:37,962 | INFO     | mean x (centered): 0.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,962 | INFO     | mean y: 2367152.8032786883
[2026-05-17 07:13:34] 2026-05-17 05:12:37,962 | INFO     | intersect: 2367152.8032786883
[2026-05-17 07:13:34] 2026-05-17 05:12:37,962 | INFO     | chi2: 8.99865406936785
[2026-05-17 07:13:34] 2026-05-17 05:12:37,963 | INFO     | current chi2=8.99865406936785 (change=7.095029624226067 %)
[2026-05-17 07:13:34] 2026-05-17 05:12:37,963 | INFO     | right removable region: 182
[2026-05-17 07:13:34] 2026-05-17 05:12:37,963 | INFO     | sum of square deviations: 1900284932.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,965 | INFO     | sum of deviations: 53191826150.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,965 | INFO     | mean x (centered): 0.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,965 | INFO     | mean y: 2421146.5519125685
[2026-05-17 07:13:34] 2026-05-17 05:12:37,965 | INFO     | intersect: 2421146.5519125685
[2026-05-17 07:13:34] 2026-05-17 05:12:37,965 | INFO     | chi2: 4.137119263186639
[2026-05-17 07:13:34] 2026-05-17 05:12:37,966 | INFO     | current chi2=4.137119263186639 (change=57.28706319584087 %)
[2026-05-17 07:13:34] 2026-05-17 05:12:37,966 | INFO     | sum of square deviations: 1748737904.5
[2026-05-17 07:13:34] 2026-05-17 05:12:37,967 | INFO     | sum of deviations: 2713439179.5
[2026-05-17 07:13:34] 2026-05-17 05:12:37,967 | INFO     | mean x (centered): 0.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,968 | INFO     | mean y: 2471869.9269662923
[2026-05-17 07:13:34] 2026-05-17 05:12:37,968 | INFO     | intersect: 2471869.9269662923
[2026-05-17 07:13:34] 2026-05-17 05:12:37,968 | INFO     | chi2: 1.1699778765851423
[2026-05-17 07:13:34] 2026-05-17 05:12:37,968 | INFO     | current chi2=1.1699778765851423 (change=71.71998673096118 %)
[2026-05-17 07:13:34] 2026-05-17 05:12:37,969 | INFO     | sum of square deviations: 1605470102.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,970 | INFO     | sum of deviations: -10111699587.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,970 | INFO     | mean x (centered): 0.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,970 | INFO     | mean y: 2485394.3005780345
[2026-05-17 07:13:34] 2026-05-17 05:12:37,971 | INFO     | intersect: 2485394.3005780345
[2026-05-17 07:13:34] 2026-05-17 05:12:37,971 | INFO     | chi2: 0.8781872503958911
[2026-05-17 07:13:34] 2026-05-17 05:12:37,971 | INFO     | current chi2=0.8781872503958911 (change=24.939841344770667 %)
[2026-05-17 07:13:34] 2026-05-17 05:12:37,971 | INFO     | left removable region: 15
[2026-05-17 07:13:34] 2026-05-17 05:12:37,972 | INFO     | sum of square deviations: 1444149868.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,973 | INFO     | sum of deviations: 1518702603.999998
[2026-05-17 07:13:34] 2026-05-17 05:12:37,973 | INFO     | mean x (centered): 0.0
[2026-05-17 07:13:34] 2026-05-17 05:12:37,973 | INFO     | mean y: 2498210.2275449103
[2026-05-17 07:13:34] 2026-05-17 05:12:37,973 | INFO     | intersect: 2498210.2275449103
[2026-05-17 07:13:34] 2026-05-17 05:12:37,974 | INFO     | chi2: 0.08044400750158995
[2026-05-17 07:13:34] 2026-05-17 05:12:37,974 | INFO     | current memory leak: 1.05 B/s (using 167 data points, chi2=0.08)
[2026-05-17 07:13:34] 2026-05-17 05:12:37,975 | INFO     | could have reported an average CPU frequency of 2000 MHz (10 samples)
[2026-05-17 07:13:34] 2026-05-17 05:12:37,975 | INFO     | ..............................
[2026-05-17 07:13:34] 2026-05-17 05:12:37,975 | INFO     | . Timing measurements:
[2026-05-17 07:13:34] 2026-05-17 05:12:37,975 | INFO     | . get job = 0 s
[2026-05-17 07:13:34] 2026-05-17 05:12:37,975 | INFO     | . initial setup = 119 s
[2026-05-17 07:13:34] 2026-05-17 05:12:37,975 | INFO     | . payload setup = 207 s
[2026-05-17 07:13:34] 2026-05-17 05:12:37,976 | INFO     | . stage-in = 0 s
[2026-05-17 07:13:34] 2026-05-17 05:12:37,976 | INFO     | . payload execution = 11557 s
[2026-05-17 07:13:34] 2026-05-17 05:12:37,976 | INFO     | . stage-out = 1 s
[2026-05-17 07:13:34] 2026-05-17 05:12:37,976 | INFO     | . log creation = 0 s
[2026-05-17 07:13:34] 2026-05-17 05:12:37,976 | INFO     | ..............................
[2026-05-17 07:13:34] 2026-05-17 05:12:38,224 | INFO     | 
[2026-05-17 07:13:34] 2026-05-17 05:12:38,225 | INFO     | job summary report
[2026-05-17 07:13:34] 2026-05-17 05:12:38,225 | INFO     | --------------------------------------------------
[2026-05-17 07:13:34] 2026-05-17 05:12:38,225 | INFO     | PanDA job id: 7138611215
[2026-05-17 07:13:34] 2026-05-17 05:12:38,225 | INFO     | task id: 50087155
[2026-05-17 07:13:34] 2026-05-17 05:12:38,225 | INFO     | errors: (none)
[2026-05-17 07:13:34] 2026-05-17 05:12:38,225 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-17 07:13:34] 2026-05-17 05:12:38,225 | INFO     | pilot state: finished 
[2026-05-17 07:13:34] 2026-05-17 05:12:38,225 | INFO     | transexitcode: 0
[2026-05-17 07:13:34] 2026-05-17 05:12:38,225 | INFO     | exeerrorcode: 0
[2026-05-17 07:13:34] 2026-05-17 05:12:38,226 | INFO     | exeerrordiag: 
[2026-05-17 07:13:34] 2026-05-17 05:12:38,226 | INFO     | exitcode: 0
[2026-05-17 07:13:34] 2026-05-17 05:12:38,226 | INFO     | exitmsg: OK
[2026-05-17 07:13:34] 2026-05-17 05:12:38,226 | INFO     | cpuconsumptiontime: 48624 s
[2026-05-17 07:13:34] 2026-05-17 05:12:38,226 | INFO     | nevents: 400
[2026-05-17 07:13:34] 2026-05-17 05:12:38,226 | INFO     | neventsw: 0
[2026-05-17 07:13:34] 2026-05-17 05:12:38,226 | INFO     | pid: 4410
[2026-05-17 07:13:34] 2026-05-17 05:12:38,226 | INFO     | pgrp: 4410
[2026-05-17 07:13:34] 2026-05-17 05:12:38,226 | INFO     | corecount: 8
[2026-05-17 07:13:34] 2026-05-17 05:12:38,226 | INFO     | event service: False
[2026-05-17 07:13:34] 2026-05-17 05:12:38,227 | INFO     | sizes: {0: 2265699, 1: 2266100, 2: 2267528, 12: 2267556, 11769: 2296961, 11771: 2305959, 11774: 2306143, 11776: 2306337}
[2026-05-17 07:13:34] 2026-05-17 05:12:38,227 | INFO     | --------------------------------------------------
[2026-05-17 07:13:34] 2026-05-17 05:12:38,227 | INFO     | 
[2026-05-17 07:13:34] 2026-05-17 05:12:38,227 | INFO     | executing command: ls -lF /var/lib/boinc/slots/7
[2026-05-17 07:13:34] 2026-05-17 05:12:38,259 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,259 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,259 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,259 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,259 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,260 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,260 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,260 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,260 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,260 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,260 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,260 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,260 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,260 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,261 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,261 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,261 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,261 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-17 07:13:34] 2026-05-17 05:12:38,261 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,261 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-17 07:13:34] 2026-05-17 05:12:38,261 | INFO     | job 7138611215 has completed (purged errors)
[2026-05-17 07:13:34] 2026-05-17 05:12:38,262 | INFO     | overall cleanup function is called
[2026-05-17 07:13:34] 2026-05-17 05:12:39,270 | INFO     | --- collectZombieJob: --- 10, [4410]
[2026-05-17 07:13:34] 2026-05-17 05:12:39,270 | INFO     | zombie collector waiting for pid 4410
[2026-05-17 07:13:34] 2026-05-17 05:12:39,270 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-17 07:13:34] 2026-05-17 05:12:39,270 | INFO     | collected zombie processes
[2026-05-17 07:13:34] 2026-05-17 05:12:39,270 | INFO     | will attempt to kill all subprocesses of pid=4410
[2026-05-17 07:13:34] 2026-05-17 05:12:39,329 | INFO     | process IDs to be killed: [4410] (in reverse order)
[2026-05-17 07:13:34] 2026-05-17 05:12:39,389 | WARNING  | found no corresponding commands to process id(s)
[2026-05-17 07:13:34] 2026-05-17 05:12:39,390 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-17 07:13:34] 2026-05-17 05:12:39,392 | INFO     | did not find any defunct processes belonging to 4410
[2026-05-17 07:13:34] 2026-05-17 05:12:39,394 | INFO     | did not find any defunct processes belonging to 4410
[2026-05-17 07:13:34] 2026-05-17 05:12:39,394 | INFO     | Ready for new job
[2026-05-17 07:13:34] 2026-05-17 05:12:39,396 | INFO     | ***************************************
[2026-05-17 07:13:34] 2026-05-17 05:12:39,396 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-17 07:13:34] 2026-05-17 05:12:39,396 | INFO     | ***************************************
[2026-05-17 07:13:34] 2026-05-17 05:12:39,396 | INFO     | 
[2026-05-17 07:13:34] 2026-05-17 05:12:39,396 | INFO     | pilot is running in a VM
[2026-05-17 07:13:34] 2026-05-17 05:12:39,397 | INFO     | architecture information:
[2026-05-17 07:13:34] 2026-05-17 05:12:39,397 | INFO     | executing command: cat /etc/os-release
[2026-05-17 07:13:34] 2026-05-17 05:12:39,424 | INFO     | cat /etc/os-release:
[2026-05-17 07:13:34] NAME="CentOS Linux"
[2026-05-17 07:13:34] VERSION="7 (Core)"
[2026-05-17 07:13:34] ID="centos"
[2026-05-17 07:13:34] ID_LIKE="rhel fedora"
[2026-05-17 07:13:34] VERSION_ID="7"
[2026-05-17 07:13:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-17 07:13:34] ANSI_COLOR="0;31"
[2026-05-17 07:13:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-17 07:13:34] HOME_URL="https://www.centos.org/"
[2026-05-17 07:13:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-17 07:13:34] 
[2026-05-17 07:13:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-17 07:13:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-17 07:13:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-17 07:13:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-17 07:13:34] 
[2026-05-17 07:13:34] 2026-05-17 05:12:39,424 | INFO     | ***************************************
[2026-05-17 07:13:34] 2026-05-17 05:12:39,927 | INFO     | executing command: df -mP /var/lib/boinc/slots/7
[2026-05-17 07:13:34] 2026-05-17 05:12:39,948 | INFO     | sufficient remaining disk space (495588474880 B)
[2026-05-17 07:13:34] 2026-05-17 05:12:39,949 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-17 07:13:34] 2026-05-17 05:12:39,949 | INFO     | current server update state: UPDATING_FINAL
[2026-05-17 07:13:34] 2026-05-17 05:12:39,949 | INFO     | update_server=False
[2026-05-17 07:13:34] 2026-05-17 05:12:39,949 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-17 07:13:34] 2026-05-17 05:12:39,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-17 07:13:34] 2026-05-17 05:12:39,950 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-17 07:13:34] 2026-05-17 05:12:40,148 | INFO     | all data control threads have been joined
[2026-05-17 07:13:34] 2026-05-17 05:12:40,571 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-17 07:13:34] 2026-05-17 05:12:40,571 | INFO     | aborting loop
[2026-05-17 07:13:34] 2026-05-17 05:12:40,952 | INFO     | [job] retrieve thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:40,956 | INFO     | [job] queue monitor thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:41,152 | INFO     | [data] control thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:41,175 | INFO     | all job control threads have been joined
[2026-05-17 07:13:34] 2026-05-17 05:12:41,227 | INFO     | all payload control threads have been joined
[2026-05-17 07:13:34] 2026-05-17 05:12:41,261 | INFO     | [job] validate thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:41,311 | INFO     | [payload] failed_post thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:41,339 | INFO     | [payload] validate_pre thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:41,577 | INFO     | [job] job monitor thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:41,705 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:41,842 | INFO     | [data] copytool_in thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:41,955 | INFO     | [data] copytool_out thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:42,051 | INFO     | [payload] validate_post thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:42,119 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-17 07:13:34] 2026-05-17 05:12:42,143 | INFO     | [job] create_data_payload thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:42,181 | INFO     | [job] control thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:42,233 | INFO     | [payload] control thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:42,311 | INFO     | [payload] execute_payloads thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:12:46,126 | INFO     | [data] queue_monitor thread has finished
[2026-05-17 07:13:34] 2026-05-17 05:13:09,884 | INFO     | PID=32354 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-17 07:13:34] 2026-05-17 05:13:09,884 | INFO     | .. there are 2 such processes running
[2026-05-17 07:13:34] 2026-05-17 05:13:09,886 | INFO     | found 0 job(s) in 20 queues
[2026-05-17 07:13:34] 2026-05-17 05:13:09,886 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-17 07:13:34] 2026-05-17 05:13:09,886 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-17 07:13:34] 2026-05-17 05:13:28,842 | INFO     | [monitor] cgroup control has ended
[2026-05-17 07:13:34] 2026-05-17 05:13:29,161 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140103988737856)>', '<ExcThread(monitor, started 140103552845568)>']
[2026-05-17 07:13:34] 2026-05-17 05:13:29,988 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-17 07:13:34] 2026-05-17 05:13:29,989 | INFO     | [monitor] control thread has ended
[2026-05-17 07:13:34] 2026-05-17 05:13:34,187 | INFO     | all workflow threads have been joined
[2026-05-17 07:13:34] 2026-05-17 05:13:34,188 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-17 07:13:34] 2026-05-17 05:13:34,188 | INFO     | traces error code: 0
[2026-05-17 07:13:34] 2026-05-17 05:13:34,188 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-17 07:13:34] 2026-05-17 05:13:34,328 [wrapper] ==== pilot stdout END ====
[2026-05-17 07:13:34] 2026-05-17 05:13:34,336 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-17 07:13:34] 2026-05-17 05:13:34,341 [wrapper] pilotpid: 32354
[2026-05-17 07:13:34] 2026-05-17 05:13:34,346 [wrapper] Pilot exit status: 0
[2026-05-17 07:13:34] 2026-05-17 05:13:34,368 [wrapper] pandaids: 7138611215
[2026-05-17 07:13:34] 2026-05-17 05:13:34,414 [wrapper] cleanup supervisor_pilot 22537 32355
[2026-05-17 07:13:34] 2026-05-17 05:13:34,424 [wrapper] Test setup, not cleaning
[2026-05-17 07:13:34] 2026-05-17 05:13:34,430 [wrapper] apfmon messages muted
[2026-05-17 07:13:34] 2026-05-17 05:13:34,434 [wrapper] ==== wrapper stdout END ====
[2026-05-17 07:13:34] 2026-05-17 05:13:34,439 [wrapper] ==== wrapper stderr END ====
[2026-05-17 07:13:34]  *** Error codes and diagnostics ***
[2026-05-17 07:13:34]     "exeErrorCode": 0,
[2026-05-17 07:13:34]     "pilotErrorCode": 0,
[2026-05-17 07:13:34]  *** Listing of results directory ***
[2026-05-17 07:13:34] total 1128176
[2026-05-17 07:13:34] -rwx------. 1 boinc boinc     36281 May 16 13:06 runpilot2-wrapper.sh
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc    683926 May 16 20:10 pilot3.tar.gz
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc      5631 May 16 20:18 queuedata.json
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc       100 May 17 03:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-17 07:13:34] -rwxr-xr-x. 1 boinc boinc      7986 May 17 03:49 run_atlas
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc       105 May 17 03:49 job.xml
[2026-05-17 07:13:34] -rw-r--r--. 2 boinc boinc 986596943 May 17 03:49 EVNT.46375503._000292.pool.root.1
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc      6304 May 17 03:49 init_data.xml
[2026-05-17 07:13:34] -rw-r--r--. 2 boinc boinc     15667 May 17 03:49 start_atlas.sh
[2026-05-17 07:13:34] drwxrwx--x. 2 boinc boinc        68 May 17 03:49 shared
[2026-05-17 07:13:34] -rw-r--r--. 2 boinc boinc    697431 May 17 03:49 input.tar.gz
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc         0 May 17 03:49 boinc_lockfile
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc      2585 May 17 03:49 pandaJob.out
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc       413 May 17 03:56 workernode_map.json
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc    993481 May 17 03:56 agis_schedconf.cvmfs.json
[2026-05-17 07:13:34] drwx------. 5 boinc boinc      4096 May 17 03:56 pilot3
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc 161616126 May 17 07:11 HITS.50087155._003505.pool.root.1
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc       490 May 17 07:12 boinc_task_state.xml
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc      1021 May 17 07:12 memory_monitor_summary.json
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc   1502367 May 17 07:12 agis_ddmendpoints.agis.ALL.json
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc    359039 May 17 07:12 log.50087155._003505.job.log.tgz.1
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc      6344 May 17 07:12 heartbeat_new.json
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc      6235 May 17 07:12 heartbeat.json
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc        95 May 17 07:13 pilot_heartbeat.json
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc      8192 May 17 07:13 boinc_mmap_file
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc        28 May 17 07:13 wrapper_checkpoint.txt
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc      4883 May 17 07:13 pilotlog.txt
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc   1105631 May 17 07:13 log.50087155._003505.job.log.1
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc       357 May 17 07:13 output.list
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc       410 May 17 07:13 runtime_log
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc   1484800 May 17 07:13 result.tar.gz
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc      8439 May 17 07:13 runtime_log.err
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc       655 May 17 07:13 4fab2a8413e3.diag
[2026-05-17 07:13:34] -rw-r--r--. 1 boinc boinc     20625 May 17 07:13 stderr.txt
[2026-05-17 07:13:34] HITS file was successfully produced:
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc 161616126 May 17 07:11 shared/HITS.pool.root.1
[2026-05-17 07:13:34]  *** Contents of shared directory: ***
[2026-05-17 07:13:34] total 1123460
[2026-05-17 07:13:34] -rw-r--r--. 2 boinc boinc 986596943 May 17 03:49 ATLAS.root_0
[2026-05-17 07:13:34] -rw-r--r--. 2 boinc boinc     15667 May 17 03:49 start_atlas.sh
[2026-05-17 07:13:34] -rw-r--r--. 2 boinc boinc    697431 May 17 03:49 input.tar.gz
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc 161616126 May 17 07:11 HITS.pool.root.1
[2026-05-17 07:13:34] -rw-------. 1 boinc boinc   1484800 May 17 07:13 result.tar.gz
07:13:35 (28368): run_atlas exited; CPU time 48735.218848
07:13:35 (28368): called boinc_finish(0)

</stderr_txt>
]]>

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