Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
04:37:04 (13643): wrapper (7.7.26015): starting
04:37:04 (13643): wrapper: running run_atlas (--nthreads 8)
[2026-05-17 04:37:04] Arguments: --nthreads 8
[2026-05-17 04:37:04] Threads: 8
[2026-05-17 04:37:04] Checking for CVMFS
[2026-05-17 04:37:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-17 04:37:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-17 04:37:05] Running cvmfs_config stat atlas.cern.ch
[2026-05-17 04:37:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-17 04:37:05] 2.11.2.0 21570 45246 102672 159592 2 243 22211475 25165824 401 130560 0 25259759 99.923 5983726 7584 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-17 04:37:05] CVMFS is ok
[2026-05-17 04:37:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-17 04:37:05] Checking for apptainer binary...
[2026-05-17 04:37:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-17 04:37:05] Running /usr/bin/apptainer --version
[2026-05-17 04:37:05] apptainer version 1.3.2-1.el7
[2026-05-17 04:37:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-17 04:37:06] cg-vwn322.simple-grid.lan
[2026-05-17 04:37:06] apptainer works
[2026-05-17 04:37:06] Set ATHENA_PROC_NUMBER=8
[2026-05-17 04:37:06] Set ATHENA_CORE_NUMBER=8
[2026-05-17 04:37:06] Starting ATLAS job with PandaID=7138699335
[2026-05-17 04:37:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-17 08:17:17]  *** The last 200 lines of the pilot log: ***
[2026-05-17 08:17:17] 2026-05-17 06:16:02,540 | INFO     | log transfer has been attempted: DONE
[2026-05-17 08:17:17] 2026-05-17 06:16:02,541 | INFO     | job 7138699335 has finished - writing final server update
[2026-05-17 08:17:17] 2026-05-17 06:16:02,545 | INFO     | total number of processed events: 400 (read)
[2026-05-17 08:17:17] 2026-05-17 06:16:02,547 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7138699335/memory_monitor_summary.json (trf name=prmon)
[2026-05-17 08:17:17] 2026-05-17 06:16:02,548 | INFO     | extracted standard info from prmon json
[2026-05-17 08:17:17] 2026-05-17 06:16:02,548 | INFO     | extracted standard memory fields from prmon json
[2026-05-17 08:17:17] 2026-05-17 06:16:02,557 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-17 08:17:17] 2026-05-17 06:16:02,557 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-17 08:17:17] 2026-05-17 06:16:02,562 | INFO     | fitting pss+swap vs Time
[2026-05-17 08:17:17] 2026-05-17 06:16:02,562 | INFO     | sum of square deviations: 3038856977.5
[2026-05-17 08:17:17] 2026-05-17 06:16:02,564 | INFO     | sum of deviations: -21623394649.499996
[2026-05-17 08:17:17] 2026-05-17 06:16:02,564 | INFO     | mean x (centered): 0.0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,564 | INFO     | mean y: 2501725.359813084
[2026-05-17 08:17:17] 2026-05-17 06:16:02,565 | INFO     | intersect: 2501725.359813084
[2026-05-17 08:17:17] 2026-05-17 06:16:02,565 | INFO     | chi2: 2.573442679961087
[2026-05-17 08:17:17] 2026-05-17 06:16:02,566 | INFO     | sum of square deviations: 2830787960.0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,567 | INFO     | sum of deviations: -6867823531.000002
[2026-05-17 08:17:17] 2026-05-17 06:16:02,567 | INFO     | mean x (centered): 0.0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,567 | INFO     | mean y: 2512344.3157894737
[2026-05-17 08:17:17] 2026-05-17 06:16:02,568 | INFO     | intersect: 2512344.3157894737
[2026-05-17 08:17:17] 2026-05-17 06:16:02,568 | INFO     | chi2: 1.807268571629497
[2026-05-17 08:17:17] 2026-05-17 06:16:02,568 | INFO     | current chi2=1.807268571629497 (change=29.772340153431177 %)
[2026-05-17 08:17:17] 2026-05-17 06:16:02,569 | INFO     | sum of square deviations: 2632440055.0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,570 | INFO     | sum of deviations: -6478695594.499995
[2026-05-17 08:17:17] 2026-05-17 06:16:02,570 | INFO     | mean x (centered): 0.0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,571 | INFO     | mean y: 2512643.5539215687
[2026-05-17 08:17:17] 2026-05-17 06:16:02,571 | INFO     | intersect: 2512643.5539215687
[2026-05-17 08:17:17] 2026-05-17 06:16:02,571 | INFO     | chi2: 1.807066401053586
[2026-05-17 08:17:17] 2026-05-17 06:16:02,571 | INFO     | current chi2=1.807066401053586 (change=0.01118652640148016 %)
[2026-05-17 08:17:17] 2026-05-17 06:16:02,571 | INFO     | right removable region: 203
[2026-05-17 08:17:17] 2026-05-17 06:16:02,572 | INFO     | sum of square deviations: 2830787960.0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,574 | INFO     | sum of deviations: -56252623638.00001
[2026-05-17 08:17:17] 2026-05-17 06:16:02,574 | INFO     | mean x (centered): 0.0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,574 | INFO     | mean y: 2526854.1052631577
[2026-05-17 08:17:17] 2026-05-17 06:16:02,574 | INFO     | intersect: 2526854.1052631577
[2026-05-17 08:17:17] 2026-05-17 06:16:02,574 | INFO     | chi2: 0.9963821709343917
[2026-05-17 08:17:17] 2026-05-17 06:16:02,575 | INFO     | current chi2=0.9963821709343917 (change=61.28213079339082 %)
[2026-05-17 08:17:17] 2026-05-17 06:16:02,575 | INFO     | sum of square deviations: 2632440055.0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,577 | INFO     | sum of deviations: -54221800627.50001
[2026-05-17 08:17:17] 2026-05-17 06:16:02,577 | INFO     | mean x (centered): 0.0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,577 | INFO     | mean y: 2525250.0343137253
[2026-05-17 08:17:17] 2026-05-17 06:16:02,577 | INFO     | intersect: 2525250.0343137253
[2026-05-17 08:17:17] 2026-05-17 06:16:02,577 | INFO     | chi2: 0.9805544600239532
[2026-05-17 08:17:17] 2026-05-17 06:16:02,577 | INFO     | current chi2=0.9805544600239532 (change=1.588518077917389 %)
[2026-05-17 08:17:17] 2026-05-17 06:16:02,578 | INFO     | left removable region: 10
[2026-05-17 08:17:17] 2026-05-17 06:16:02,578 | INFO     | sum of square deviations: 2229146912.0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,585 | INFO     | sum of deviations: -38068740493.0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,585 | INFO     | mean x (centered): 0.0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,585 | INFO     | mean y: 2538139.7720207255
[2026-05-17 08:17:17] 2026-05-17 06:16:02,585 | INFO     | intersect: 2538139.7720207255
[2026-05-17 08:17:17] 2026-05-17 06:16:02,585 | INFO     | chi2: 0.1841627601406515
[2026-05-17 08:17:17] 2026-05-17 06:16:02,586 | INFO     | current memory leak: -17.08 B/s (using 193 data points, chi2=0.18)
[2026-05-17 08:17:17] 2026-05-17 06:16:02,586 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-05-17 08:17:17] 2026-05-17 06:16:02,586 | INFO     | ..............................
[2026-05-17 08:17:17] 2026-05-17 06:16:02,587 | INFO     | . Timing measurements:
[2026-05-17 08:17:17] 2026-05-17 06:16:02,587 | INFO     | . get job = 0 s
[2026-05-17 08:17:17] 2026-05-17 06:16:02,587 | INFO     | . initial setup = 8 s
[2026-05-17 08:17:17] 2026-05-17 06:16:02,587 | INFO     | . payload setup = 29 s
[2026-05-17 08:17:17] 2026-05-17 06:16:02,587 | INFO     | . stage-in = 0 s
[2026-05-17 08:17:17] 2026-05-17 06:16:02,587 | INFO     | . payload execution = 13058 s
[2026-05-17 08:17:17] 2026-05-17 06:16:02,587 | INFO     | . stage-out = 3 s
[2026-05-17 08:17:17] 2026-05-17 06:16:02,587 | INFO     | . log creation = 1 s
[2026-05-17 08:17:17] 2026-05-17 06:16:02,587 | INFO     | ..............................
[2026-05-17 08:17:17] 2026-05-17 06:16:02,751 | INFO     | 
[2026-05-17 08:17:17] 2026-05-17 06:16:02,751 | INFO     | job summary report
[2026-05-17 08:17:17] 2026-05-17 06:16:02,751 | INFO     | --------------------------------------------------
[2026-05-17 08:17:17] 2026-05-17 06:16:02,751 | INFO     | PanDA job id: 7138699335
[2026-05-17 08:17:17] 2026-05-17 06:16:02,751 | INFO     | task id: 50087078
[2026-05-17 08:17:17] 2026-05-17 06:16:02,751 | INFO     | errors: (none)
[2026-05-17 08:17:17] 2026-05-17 06:16:02,752 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-17 08:17:17] 2026-05-17 06:16:02,752 | INFO     | pilot state: finished 
[2026-05-17 08:17:17] 2026-05-17 06:16:02,752 | INFO     | transexitcode: 0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,752 | INFO     | exeerrorcode: 0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,752 | INFO     | exeerrordiag: 
[2026-05-17 08:17:17] 2026-05-17 06:16:02,752 | INFO     | exitcode: 0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,752 | INFO     | exitmsg: OK
[2026-05-17 08:17:17] 2026-05-17 06:16:02,752 | INFO     | cpuconsumptiontime: 49699 s
[2026-05-17 08:17:17] 2026-05-17 06:16:02,752 | INFO     | nevents: 400
[2026-05-17 08:17:17] 2026-05-17 06:16:02,752 | INFO     | neventsw: 0
[2026-05-17 08:17:17] 2026-05-17 06:16:02,753 | INFO     | pid: 23863
[2026-05-17 08:17:17] 2026-05-17 06:16:02,753 | INFO     | pgrp: 23863
[2026-05-17 08:17:17] 2026-05-17 06:16:02,753 | INFO     | corecount: 8
[2026-05-17 08:17:17] 2026-05-17 06:16:02,753 | INFO     | event service: False
[2026-05-17 08:17:17] 2026-05-17 06:16:02,753 | INFO     | sizes: {0: 2267476, 1: 2267476, 13091: 2297609, 13092: 2297608, 13096: 2306746, 13098: 2306884}
[2026-05-17 08:17:17] 2026-05-17 06:16:02,753 | INFO     | --------------------------------------------------
[2026-05-17 08:17:17] 2026-05-17 06:16:02,753 | INFO     | 
[2026-05-17 08:17:17] 2026-05-17 06:16:02,753 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-05-17 08:17:17] 2026-05-17 06:16:03,794 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,794 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,794 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,794 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,794 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,795 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,795 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,795 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,795 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,795 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,795 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,795 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,795 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,795 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,795 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,795 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,796 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,796 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-17 08:17:17] 2026-05-17 06:16:03,796 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,796 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-17 08:17:17] 2026-05-17 06:16:03,796 | INFO     | job 7138699335 has completed (purged errors)
[2026-05-17 08:17:17] 2026-05-17 06:16:03,796 | INFO     | overall cleanup function is called
[2026-05-17 08:17:17] 2026-05-17 06:16:04,805 | INFO     | --- collectZombieJob: --- 10, [23863]
[2026-05-17 08:17:17] 2026-05-17 06:16:04,805 | INFO     | zombie collector waiting for pid 23863
[2026-05-17 08:17:17] 2026-05-17 06:16:04,806 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-17 08:17:17] 2026-05-17 06:16:04,806 | INFO     | collected zombie processes
[2026-05-17 08:17:17] 2026-05-17 06:16:04,806 | INFO     | will attempt to kill all subprocesses of pid=23863
[2026-05-17 08:17:17] 2026-05-17 06:16:04,914 | INFO     | process IDs to be killed: [23863] (in reverse order)
[2026-05-17 08:17:17] 2026-05-17 06:16:06,188 | WARNING  | found no corresponding commands to process id(s)
[2026-05-17 08:17:17] 2026-05-17 06:16:06,188 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-17 08:17:17] 2026-05-17 06:16:06,191 | INFO     | did not find any defunct processes belonging to 23863
[2026-05-17 08:17:17] 2026-05-17 06:16:06,192 | INFO     | did not find any defunct processes belonging to 23863
[2026-05-17 08:17:17] 2026-05-17 06:16:06,193 | INFO     | Ready for new job
[2026-05-17 08:17:17] 2026-05-17 06:16:06,194 | INFO     | ***************************************
[2026-05-17 08:17:17] 2026-05-17 06:16:06,195 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-17 08:17:17] 2026-05-17 06:16:06,195 | INFO     | ***************************************
[2026-05-17 08:17:17] 2026-05-17 06:16:06,195 | INFO     | 
[2026-05-17 08:17:17] 2026-05-17 06:16:06,195 | INFO     | pilot is running in a VM
[2026-05-17 08:17:17] 2026-05-17 06:16:06,196 | INFO     | architecture information:
[2026-05-17 08:17:17] 2026-05-17 06:16:06,201 | INFO     | executing command: cat /etc/os-release
[2026-05-17 08:17:17] 2026-05-17 06:16:06,589 | INFO     | cat /etc/os-release:
[2026-05-17 08:17:17] NAME="CentOS Linux"
[2026-05-17 08:17:17] VERSION="7 (Core)"
[2026-05-17 08:17:17] ID="centos"
[2026-05-17 08:17:17] ID_LIKE="rhel fedora"
[2026-05-17 08:17:17] VERSION_ID="7"
[2026-05-17 08:17:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-17 08:17:17] ANSI_COLOR="0;31"
[2026-05-17 08:17:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-17 08:17:17] HOME_URL="https://www.centos.org/"
[2026-05-17 08:17:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-17 08:17:17] 
[2026-05-17 08:17:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-17 08:17:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-17 08:17:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-17 08:17:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-17 08:17:17] 
[2026-05-17 08:17:17] 2026-05-17 06:16:06,589 | INFO     | ***************************************
[2026-05-17 08:17:17] 2026-05-17 06:16:07,092 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-05-17 08:17:17] 2026-05-17 06:16:07,394 | INFO     | sufficient remaining disk space (497206427648 B)
[2026-05-17 08:17:17] 2026-05-17 06:16:07,394 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-17 08:17:17] 2026-05-17 06:16:07,395 | INFO     | current server update state: UPDATING_FINAL
[2026-05-17 08:17:17] 2026-05-17 06:16:07,395 | INFO     | update_server=False
[2026-05-17 08:17:17] 2026-05-17 06:16:07,395 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-17 08:17:17] 2026-05-17 06:16:07,765 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-17 08:17:17] 2026-05-17 06:16:07,842 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-17 08:17:17] 2026-05-17 06:16:07,842 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-17 08:17:17] 2026-05-17 06:16:07,843 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-17 08:17:17] 2026-05-17 06:16:07,843 | INFO     | will abort loop
[2026-05-17 08:17:17] 2026-05-17 06:16:07,899 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-17 08:17:17] 2026-05-17 06:16:07,935 | INFO     | all payload control threads have been joined
[2026-05-17 08:17:17] 2026-05-17 06:16:08,179 | INFO     | all data control threads have been joined
[2026-05-17 08:17:17] 2026-05-17 06:16:08,401 | INFO     | [job] retrieve thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:08,627 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:08,690 | INFO     | all job control threads have been joined
[2026-05-17 08:17:17] 2026-05-17 06:16:08,771 | INFO     | [job] queue monitor thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:08,844 | INFO     | [payload] execute_payloads thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:08,848 | INFO     | [job] job monitor thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:08,941 | INFO     | [payload] control thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:09,185 | INFO     | [data] control thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:09,240 | INFO     | [payload] validate_pre thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:09,496 | INFO     | [data] copytool_in thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:09,610 | INFO     | [payload] failed_post thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:09,696 | INFO     | [job] control thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:09,795 | INFO     | [job] validate thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:09,841 | INFO     | [job] create_data_payload thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:09,906 | INFO     | [data] copytool_out thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:09,931 | INFO     | [payload] validate_post thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:10,485 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-17 08:17:17] 2026-05-17 06:16:14,494 | INFO     | [data] queue_monitor thread has finished
[2026-05-17 08:17:17] 2026-05-17 06:16:36,232 | INFO     | PID=18430 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-17 08:17:17] 2026-05-17 06:16:36,232 | INFO     | .. there are 2 such processes running
[2026-05-17 08:17:17] 2026-05-17 06:16:36,238 | INFO     | found 0 job(s) in 20 queues
[2026-05-17 08:17:17] 2026-05-17 06:16:36,239 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-17 08:17:17] 2026-05-17 06:16:36,239 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-17 08:17:17] 2026-05-17 06:17:05,444 | INFO     | [monitor] cgroup control has ended
[2026-05-17 08:17:17] 2026-05-17 06:17:06,682 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139823904634688)>', '<ExcThread(monitor, started 139823230727936)>']
[2026-05-17 08:17:17] 2026-05-17 06:17:07,424 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-17 08:17:17] 2026-05-17 06:17:07,424 | INFO     | [monitor] control thread has ended
[2026-05-17 08:17:17] 2026-05-17 06:17:11,708 | INFO     | all workflow threads have been joined
[2026-05-17 08:17:17] 2026-05-17 06:17:11,708 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-17 08:17:17] 2026-05-17 06:17:11,709 | INFO     | traces error code: 0
[2026-05-17 08:17:17] 2026-05-17 06:17:11,709 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-17 08:17:17] 2026-05-17 06:17:12,232 [wrapper] ==== pilot stdout END ====
[2026-05-17 08:17:17] 2026-05-17 06:17:12,334 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-17 08:17:17] 2026-05-17 06:17:12,444 [wrapper] pilotpid: 18430
[2026-05-17 08:17:17] 2026-05-17 06:17:12,557 [wrapper] Pilot exit status: 0
[2026-05-17 08:17:17] 2026-05-17 06:17:13,077 [wrapper] pandaids: 7138699335
[2026-05-17 08:17:17] 2026-05-17 06:17:14,088 [wrapper] cleanup supervisor_pilot  2551 18431
[2026-05-17 08:17:17] 2026-05-17 06:17:14,184 [wrapper] Test setup, not cleaning
[2026-05-17 08:17:17] 2026-05-17 06:17:14,276 [wrapper] apfmon messages muted
[2026-05-17 08:17:17] 2026-05-17 06:17:14,351 [wrapper] ==== wrapper stdout END ====
[2026-05-17 08:17:17] 2026-05-17 06:17:14,410 [wrapper] ==== wrapper stderr END ====
[2026-05-17 08:17:17]  *** Error codes and diagnostics ***
[2026-05-17 08:17:17]     "exeErrorCode": 0,
[2026-05-17 08:17:17]     "pilotErrorCode": 0,
[2026-05-17 08:17:17]  *** Listing of results directory ***
[2026-05-17 08:17:17] total 611180
[2026-05-17 08:17:17] -rwx------. 1 boinc boinc     36281 May 16 20:30 runpilot2-wrapper.sh
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc    683926 May 16 22:42 pilot3.tar.gz
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc      5631 May 16 23:01 queuedata.json
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc       100 May 17 04:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-17 08:17:17] -rwxr-xr-x. 1 boinc boinc      7986 May 17 04:37 run_atlas
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc       105 May 17 04:37 job.xml
[2026-05-17 08:17:17] -rw-r--r--. 2 boinc boinc 441096738 May 17 04:37 EVNT.46701437._000889.pool.root.1
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc      6304 May 17 04:37 init_data.xml
[2026-05-17 08:17:17] -rw-r--r--. 2 boinc boinc     15667 May 17 04:37 start_atlas.sh
[2026-05-17 08:17:17] drwxrwx--x. 2 boinc boinc        68 May 17 04:37 shared
[2026-05-17 08:17:17] -rw-r--r--. 2 boinc boinc    697430 May 17 04:37 input.tar.gz
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc         0 May 17 04:37 boinc_lockfile
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc      2567 May 17 04:37 pandaJob.out
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc    993489 May 17 04:37 agis_schedconf.cvmfs.json
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc       415 May 17 04:37 workernode_map.json
[2026-05-17 08:17:17] drwx------. 5 boinc boinc      4096 May 17 04:37 pilot3
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc 177449040 May 17 08:14 HITS.50087078._011914.pool.root.1
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc       489 May 17 08:15 boinc_task_state.xml
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc      1011 May 17 08:15 memory_monitor_summary.json
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc   1502367 May 17 08:15 agis_ddmendpoints.agis.ALL.json
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc    383788 May 17 08:15 log.50087078._011914.job.log.tgz.1
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc      6334 May 17 08:16 heartbeat_new.json
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc      6225 May 17 08:16 heartbeat.json
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc        95 May 17 08:16 pilot_heartbeat.json
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc      5069 May 17 08:17 pilotlog.txt
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc   1215950 May 17 08:17 log.50087078._011914.job.log.1
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc        28 May 17 08:17 wrapper_checkpoint.txt
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc      8192 May 17 08:17 boinc_mmap_file
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc       357 May 17 08:17 output.list
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc       410 May 17 08:17 runtime_log
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc   1617920 May 17 08:17 result.tar.gz
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc      8439 May 17 08:17 runtime_log.err
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc       655 May 17 08:17 b7c037a6ddf0.diag
[2026-05-17 08:17:17] -rw-r--r--. 1 boinc boinc     20617 May 17 08:17 stderr.txt
[2026-05-17 08:17:17] HITS file was successfully produced:
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc 177449040 May 17 08:14 shared/HITS.pool.root.1
[2026-05-17 08:17:17]  *** Contents of shared directory: ***
[2026-05-17 08:17:17] total 606332
[2026-05-17 08:17:17] -rw-r--r--. 2 boinc boinc 441096738 May 17 04:37 ATLAS.root_0
[2026-05-17 08:17:17] -rw-r--r--. 2 boinc boinc     15667 May 17 04:37 start_atlas.sh
[2026-05-17 08:17:17] -rw-r--r--. 2 boinc boinc    697430 May 17 04:37 input.tar.gz
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc 177449040 May 17 08:14 HITS.pool.root.1
[2026-05-17 08:17:17] -rw-------. 1 boinc boinc   1617920 May 17 08:17 result.tar.gz
08:17:19 (13643): run_atlas exited; CPU time 49824.143364
08:17:19 (13643): called boinc_finish(0)

</stderr_txt>
]]>

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