Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:25:23 (32379): wrapper (7.7.26015): starting
13:25:23 (32379): wrapper: running run_atlas (--nthreads 8)
[2026-05-16 13:25:23] Arguments: --nthreads 8
[2026-05-16 13:25:23] Threads: 8
[2026-05-16 13:25:23] Checking for CVMFS
[2026-05-16 13:25:25] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-16 13:25:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-16 13:25:33] Running cvmfs_config stat atlas.cern.ch
[2026-05-16 13:25:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-16 13:25:35] 2.11.2.0 21570 44335 102372 159574 3 11 22096735 25165824 96 130560 0 24937781 99.926 5947379 7898 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-16 13:25:35] CVMFS is ok
[2026-05-16 13:25:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-16 13:25:35] Checking for apptainer binary...
[2026-05-16 13:25:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-16 13:25:35] Running /usr/bin/apptainer --version
[2026-05-16 13:25:35] apptainer version 1.3.2-1.el7
[2026-05-16 13:25:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-16 13:25:38] cg-vwn322.simple-grid.lan
[2026-05-16 13:25:38] apptainer works
[2026-05-16 13:25:38] Set ATHENA_PROC_NUMBER=8
[2026-05-16 13:25:38] Set ATHENA_CORE_NUMBER=8
[2026-05-16 13:25:38] Starting ATLAS job with PandaID=7138522813
[2026-05-16 13:25:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-16 17:25:15]  *** The last 200 lines of the pilot log: ***
[2026-05-16 17:25:15] 2026-05-16 15:24:24,878 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-16 17:25:15] 2026-05-16 15:24:24,878 | INFO     | log transfer has been attempted: DONE
[2026-05-16 17:25:15] 2026-05-16 15:24:24,879 | INFO     | job 7138522813 has finished - writing final server update
[2026-05-16 17:25:15] 2026-05-16 15:24:24,879 | INFO     | total number of processed events: 400 (read)
[2026-05-16 17:25:15] 2026-05-16 15:24:24,881 | INFO     | using path: /var/lib/boinc/slots/6/PanDA_Pilot-7138522813/memory_monitor_summary.json (trf name=prmon)
[2026-05-16 17:25:15] 2026-05-16 15:24:24,882 | INFO     | extracted standard info from prmon json
[2026-05-16 17:25:15] 2026-05-16 15:24:24,882 | INFO     | extracted standard memory fields from prmon json
[2026-05-16 17:25:15] 2026-05-16 15:24:24,882 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-16 17:25:15] 2026-05-16 15:24:24,882 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-16 17:25:15] 2026-05-16 15:24:24,887 | INFO     | fitting pss+swap vs Time
[2026-05-16 17:25:15] 2026-05-16 15:24:24,888 | INFO     | sum of square deviations: 3485088600.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,890 | INFO     | sum of deviations: 104339124785.5
[2026-05-16 17:25:15] 2026-05-16 15:24:24,890 | INFO     | mean x (centered): 0.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,890 | INFO     | mean y: 2408986.28125
[2026-05-16 17:25:15] 2026-05-16 15:24:24,890 | INFO     | intersect: 2408986.28125
[2026-05-16 17:25:15] 2026-05-16 15:24:24,891 | INFO     | chi2: 8.975969766800269
[2026-05-16 17:25:15] 2026-05-16 15:24:24,891 | INFO     | sum of square deviations: 3256879670.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,893 | INFO     | sum of deviations: 116189299881.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,893 | INFO     | mean x (centered): 0.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,893 | INFO     | mean y: 2416727.506849315
[2026-05-16 17:25:15] 2026-05-16 15:24:24,894 | INFO     | intersect: 2416727.506849315
[2026-05-16 17:25:15] 2026-05-16 15:24:24,894 | INFO     | chi2: 8.30288461348778
[2026-05-16 17:25:15] 2026-05-16 15:24:24,894 | INFO     | current chi2=8.30288461348778 (change=7.498745771204042 %)
[2026-05-16 17:25:15] 2026-05-16 15:24:24,894 | INFO     | right removable region: 218
[2026-05-16 17:25:15] 2026-05-16 15:24:24,895 | INFO     | sum of square deviations: 3256879670.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,897 | INFO     | sum of deviations: 23576647071.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,897 | INFO     | mean x (centered): 0.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,897 | INFO     | mean y: 2462950.4657534244
[2026-05-16 17:25:15] 2026-05-16 15:24:24,897 | INFO     | intersect: 2462950.4657534244
[2026-05-16 17:25:15] 2026-05-16 15:24:24,897 | INFO     | chi2: 3.3907455866189387
[2026-05-16 17:25:15] 2026-05-16 15:24:24,898 | INFO     | current chi2=3.3907455866189387 (change=62.22418663707616 %)
[2026-05-16 17:25:15] 2026-05-16 15:24:24,898 | INFO     | sum of square deviations: 3038856977.5
[2026-05-16 17:25:15] 2026-05-16 15:24:24,900 | INFO     | sum of deviations: -30169254279.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,900 | INFO     | mean x (centered): 0.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,900 | INFO     | mean y: 2500429.9813084113
[2026-05-16 17:25:15] 2026-05-16 15:24:24,900 | INFO     | intersect: 2500429.9813084113
[2026-05-16 17:25:15] 2026-05-16 15:24:24,901 | INFO     | chi2: 0.9957346673085581
[2026-05-16 17:25:15] 2026-05-16 15:24:24,901 | INFO     | current chi2=0.9957346673085581 (change=70.63375467513478 %)
[2026-05-16 17:25:15] 2026-05-16 15:24:24,901 | INFO     | sum of square deviations: 2830787960.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,903 | INFO     | sum of deviations: -33684892716.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,903 | INFO     | mean x (centered): 0.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,903 | INFO     | mean y: 2502928.837320574
[2026-05-16 17:25:15] 2026-05-16 15:24:24,903 | INFO     | intersect: 2502928.837320574
[2026-05-16 17:25:15] 2026-05-16 15:24:24,904 | INFO     | chi2: 0.9285165432919587
[2026-05-16 17:25:15] 2026-05-16 15:24:24,904 | INFO     | current chi2=0.9285165432919587 (change=6.750605982042192 %)
[2026-05-16 17:25:15] 2026-05-16 15:24:24,904 | INFO     | left removable region: 15
[2026-05-16 17:25:15] 2026-05-16 15:24:24,904 | INFO     | sum of square deviations: 2593916542.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,906 | INFO     | sum of deviations: -19564548544.000004
[2026-05-16 17:25:15] 2026-05-16 15:24:24,906 | INFO     | mean x (centered): 0.0
[2026-05-16 17:25:15] 2026-05-16 15:24:24,906 | INFO     | mean y: 2513582.6354679805
[2026-05-16 17:25:15] 2026-05-16 15:24:24,906 | INFO     | intersect: 2513582.6354679805
[2026-05-16 17:25:15] 2026-05-16 15:24:24,907 | INFO     | chi2: 0.14024053803969563
[2026-05-16 17:25:15] 2026-05-16 15:24:24,907 | INFO     | current memory leak: -7.54 B/s (using 203 data points, chi2=0.14)
[2026-05-16 17:25:15] 2026-05-16 15:24:24,907 | INFO     | could have reported an average CPU frequency of 1999 MHz (11 samples)
[2026-05-16 17:25:15] 2026-05-16 15:24:24,908 | INFO     | ..............................
[2026-05-16 17:25:15] 2026-05-16 15:24:24,908 | INFO     | . Timing measurements:
[2026-05-16 17:25:15] 2026-05-16 15:24:24,908 | INFO     | . get job = 0 s
[2026-05-16 17:25:15] 2026-05-16 15:24:24,908 | INFO     | . initial setup = 127 s
[2026-05-16 17:25:15] 2026-05-16 15:24:24,908 | INFO     | . payload setup = 214 s
[2026-05-16 17:25:15] 2026-05-16 15:24:24,908 | INFO     | . stage-in = 0 s
[2026-05-16 17:25:15] 2026-05-16 15:24:24,908 | INFO     | . payload execution = 13727 s
[2026-05-16 17:25:15] 2026-05-16 15:24:24,908 | INFO     | . stage-out = 3 s
[2026-05-16 17:25:15] 2026-05-16 15:24:24,908 | INFO     | . log creation = 1 s
[2026-05-16 17:25:15] 2026-05-16 15:24:24,908 | INFO     | ..............................
[2026-05-16 17:25:15] 2026-05-16 15:24:25,032 | INFO     | 
[2026-05-16 17:25:15] 2026-05-16 15:24:25,033 | INFO     | job summary report
[2026-05-16 17:25:15] 2026-05-16 15:24:25,033 | INFO     | --------------------------------------------------
[2026-05-16 17:25:15] 2026-05-16 15:24:25,033 | INFO     | PanDA job id: 7138522813
[2026-05-16 17:25:15] 2026-05-16 15:24:25,033 | INFO     | task id: 50087078
[2026-05-16 17:25:15] 2026-05-16 15:24:25,033 | INFO     | errors: (none)
[2026-05-16 17:25:15] 2026-05-16 15:24:25,033 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-16 17:25:15] 2026-05-16 15:24:25,033 | INFO     | pilot state: finished 
[2026-05-16 17:25:15] 2026-05-16 15:24:25,033 | INFO     | transexitcode: 0
[2026-05-16 17:25:15] 2026-05-16 15:24:25,033 | INFO     | exeerrorcode: 0
[2026-05-16 17:25:15] 2026-05-16 15:24:25,033 | INFO     | exeerrordiag: 
[2026-05-16 17:25:15] 2026-05-16 15:24:25,034 | INFO     | exitcode: 0
[2026-05-16 17:25:15] 2026-05-16 15:24:25,034 | INFO     | exitmsg: OK
[2026-05-16 17:25:15] 2026-05-16 15:24:25,034 | INFO     | cpuconsumptiontime: 51307 s
[2026-05-16 17:25:15] 2026-05-16 15:24:25,034 | INFO     | nevents: 400
[2026-05-16 17:25:15] 2026-05-16 15:24:25,034 | INFO     | neventsw: 0
[2026-05-16 17:25:15] 2026-05-16 15:24:25,034 | INFO     | pid: 8483
[2026-05-16 17:25:15] 2026-05-16 15:24:25,034 | INFO     | pgrp: 8483
[2026-05-16 17:25:15] 2026-05-16 15:24:25,034 | INFO     | corecount: 8
[2026-05-16 17:25:15] 2026-05-16 15:24:25,034 | INFO     | event service: False
[2026-05-16 17:25:15] 2026-05-16 15:24:25,034 | INFO     | sizes: {0: 2265013, 1: 2266071, 2: 2267527, 13: 2267527, 13945: 2297893, 13946: 2297892, 13950: 2307074, 13951: 2307324}
[2026-05-16 17:25:15] 2026-05-16 15:24:25,035 | INFO     | --------------------------------------------------
[2026-05-16 17:25:15] 2026-05-16 15:24:25,035 | INFO     | 
[2026-05-16 17:25:15] 2026-05-16 15:24:25,035 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-05-16 17:25:15] 2026-05-16 15:24:25,567 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,567 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,567 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,568 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,568 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,568 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,568 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,568 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,568 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,568 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,568 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,569 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,569 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,569 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,569 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,569 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,569 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,569 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-16 17:25:15] 2026-05-16 15:24:25,569 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,570 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-16 17:25:15] 2026-05-16 15:24:25,570 | INFO     | job 7138522813 has completed (purged errors)
[2026-05-16 17:25:15] 2026-05-16 15:24:25,570 | INFO     | overall cleanup function is called
[2026-05-16 17:25:15] 2026-05-16 15:24:26,579 | INFO     | --- collectZombieJob: --- 10, [8483]
[2026-05-16 17:25:15] 2026-05-16 15:24:26,579 | INFO     | zombie collector waiting for pid 8483
[2026-05-16 17:25:15] 2026-05-16 15:24:26,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-16 17:25:15] 2026-05-16 15:24:26,580 | INFO     | collected zombie processes
[2026-05-16 17:25:15] 2026-05-16 15:24:26,580 | INFO     | will attempt to kill all subprocesses of pid=8483
[2026-05-16 17:25:15] 2026-05-16 15:24:26,644 | INFO     | process IDs to be killed: [8483] (in reverse order)
[2026-05-16 17:25:15] 2026-05-16 15:24:27,697 | WARNING  | found no corresponding commands to process id(s)
[2026-05-16 17:25:15] 2026-05-16 15:24:27,697 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-16 17:25:15] 2026-05-16 15:24:27,699 | INFO     | did not find any defunct processes belonging to 8483
[2026-05-16 17:25:15] 2026-05-16 15:24:27,701 | INFO     | did not find any defunct processes belonging to 8483
[2026-05-16 17:25:15] 2026-05-16 15:24:27,701 | INFO     | Ready for new job
[2026-05-16 17:25:15] 2026-05-16 15:24:27,703 | INFO     | ***************************************
[2026-05-16 17:25:15] 2026-05-16 15:24:27,703 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-16 17:25:15] 2026-05-16 15:24:27,703 | INFO     | ***************************************
[2026-05-16 17:25:15] 2026-05-16 15:24:27,704 | INFO     | 
[2026-05-16 17:25:15] 2026-05-16 15:24:27,704 | INFO     | pilot is running in a VM
[2026-05-16 17:25:15] 2026-05-16 15:24:27,704 | INFO     | architecture information:
[2026-05-16 17:25:15] 2026-05-16 15:24:27,712 | INFO     | executing command: cat /etc/os-release
[2026-05-16 17:25:15] 2026-05-16 15:24:28,051 | INFO     | cat /etc/os-release:
[2026-05-16 17:25:15] NAME="CentOS Linux"
[2026-05-16 17:25:15] VERSION="7 (Core)"
[2026-05-16 17:25:15] ID="centos"
[2026-05-16 17:25:15] ID_LIKE="rhel fedora"
[2026-05-16 17:25:15] VERSION_ID="7"
[2026-05-16 17:25:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-16 17:25:15] ANSI_COLOR="0;31"
[2026-05-16 17:25:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-16 17:25:15] HOME_URL="https://www.centos.org/"
[2026-05-16 17:25:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-16 17:25:15] 
[2026-05-16 17:25:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-16 17:25:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-16 17:25:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-16 17:25:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-16 17:25:15] 
[2026-05-16 17:25:15] 2026-05-16 15:24:28,051 | INFO     | ***************************************
[2026-05-16 17:25:15] 2026-05-16 15:24:28,554 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-05-16 17:25:15] 2026-05-16 15:24:28,792 | INFO     | sufficient remaining disk space (496130588672 B)
[2026-05-16 17:25:15] 2026-05-16 15:24:28,792 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-16 17:25:15] 2026-05-16 15:24:28,792 | INFO     | current server update state: UPDATING_FINAL
[2026-05-16 17:25:15] 2026-05-16 15:24:28,792 | INFO     | update_server=False
[2026-05-16 17:25:15] 2026-05-16 15:24:28,793 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-16 17:25:15] 2026-05-16 15:24:29,294 | INFO     | all payload control threads have been joined
[2026-05-16 17:25:15] 2026-05-16 15:24:29,396 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-16 17:25:15] 2026-05-16 15:24:29,683 | INFO     | all data control threads have been joined
[2026-05-16 17:25:15] 2026-05-16 15:24:29,750 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-16 17:25:15] 2026-05-16 15:24:29,750 | INFO     | aborting loop
[2026-05-16 17:25:15] 2026-05-16 15:24:29,798 | INFO     | [job] retrieve thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:29,872 | INFO     | [job] validate thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:29,894 | INFO     | [payload] validate_pre thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:29,982 | INFO     | [job] create_data_payload thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:30,050 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-16 17:25:15] 2026-05-16 15:24:30,300 | INFO     | [payload] control thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:30,495 | INFO     | all job control threads have been joined
[2026-05-16 17:25:15] 2026-05-16 15:24:30,569 | INFO     | [payload] validate_post thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:30,665 | INFO     | [payload] failed_post thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:30,689 | INFO     | [data] control thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:30,732 | INFO     | [data] copytool_in thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:30,756 | INFO     | [job] job monitor thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:30,885 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-16 17:25:15] 2026-05-16 15:24:31,056 | INFO     | [job] queue monitor thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:31,297 | INFO     | [payload] execute_payloads thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:31,405 | INFO     | [data] copytool_out thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:31,501 | INFO     | [job] control thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:34,894 | INFO     | [data] queue_monitor thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:39,240 | INFO     | job.realtimelogging is not enabled
[2026-05-16 17:25:15] 2026-05-16 15:24:40,248 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-16 17:25:15] 2026-05-16 15:24:58,512 | INFO     | PID=4031 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-05-16 17:25:15] 2026-05-16 15:24:58,512 | INFO     | .. there are 2 such processes running
[2026-05-16 17:25:15] 2026-05-16 15:24:58,518 | INFO     | found 0 job(s) in 20 queues
[2026-05-16 17:25:15] 2026-05-16 15:24:58,518 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-16 17:25:15] 2026-05-16 15:24:58,519 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-16 17:25:15] 2026-05-16 15:25:03,933 | INFO     | [monitor] cgroup control has ended
[2026-05-16 17:25:15] 2026-05-16 15:25:05,604 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140004384614208)>', '<ExcThread(monitor, started 140004072331008)>']
[2026-05-16 17:25:15] 2026-05-16 15:25:06,566 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-16 17:25:15] 2026-05-16 15:25:06,566 | INFO     | [monitor] control thread has ended
[2026-05-16 17:25:15] 2026-05-16 15:25:10,630 | INFO     | all workflow threads have been joined
[2026-05-16 17:25:15] 2026-05-16 15:25:10,630 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-16 17:25:15] 2026-05-16 15:25:10,631 | INFO     | traces error code: 0
[2026-05-16 17:25:15] 2026-05-16 15:25:10,631 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-16 17:25:15] 2026-05-16 15:25:11,096 [wrapper] ==== pilot stdout END ====
[2026-05-16 17:25:15] 2026-05-16 15:25:11,180 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-16 17:25:15] 2026-05-16 15:25:11,250 [wrapper] pilotpid: 4031
[2026-05-16 17:25:15] 2026-05-16 15:25:11,370 [wrapper] Pilot exit status: 0
[2026-05-16 17:25:15] 2026-05-16 15:25:11,894 [wrapper] pandaids: 7138522813
[2026-05-16 17:25:15] 2026-05-16 15:25:12,672 [wrapper] cleanup supervisor_pilot 15106 4032
[2026-05-16 17:25:15] 2026-05-16 15:25:12,776 [wrapper] Test setup, not cleaning
[2026-05-16 17:25:15] 2026-05-16 15:25:12,881 [wrapper] apfmon messages muted
[2026-05-16 17:25:15] 2026-05-16 15:25:12,975 [wrapper] ==== wrapper stdout END ====
[2026-05-16 17:25:15] 2026-05-16 15:25:13,090 [wrapper] ==== wrapper stderr END ====
[2026-05-16 17:25:15]  *** Error codes and diagnostics ***
[2026-05-16 17:25:15]     "exeErrorCode": 0,
[2026-05-16 17:25:15]     "pilotErrorCode": 0,
[2026-05-16 17:25:15]  *** Listing of results directory ***
[2026-05-16 17:25:15] total 624248
[2026-05-16 17:25:15] -rwx------. 1 boinc boinc     36281 May 15 20:10 runpilot2-wrapper.sh
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc    683926 May 16 10:57 pilot3.tar.gz
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc      5631 May 16 11:25 queuedata.json
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc       100 May 16 13:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-16 17:25:15] -rwxr-xr-x. 1 boinc boinc      7986 May 16 13:25 run_atlas
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc       105 May 16 13:25 job.xml
[2026-05-16 17:25:15] -rw-r--r--. 2 boinc boinc 445613898 May 16 13:25 EVNT.46701437._000810.pool.root.1
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc      6303 May 16 13:25 init_data.xml
[2026-05-16 17:25:15] -rw-r--r--. 2 boinc boinc     15667 May 16 13:25 start_atlas.sh
[2026-05-16 17:25:15] drwxrwx--x. 2 boinc boinc        68 May 16 13:25 shared
[2026-05-16 17:25:15] -rw-r--r--. 2 boinc boinc    697431 May 16 13:25 input.tar.gz
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc         0 May 16 13:25 boinc_lockfile
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc      2564 May 16 13:25 pandaJob.out
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc       415 May 16 13:31 workernode_map.json
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc    993481 May 16 13:31 agis_schedconf.cvmfs.json
[2026-05-16 17:25:15] drwx------. 5 boinc boinc      4096 May 16 13:31 pilot3
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc 186106375 May 16 17:22 HITS.50087078._007973.pool.root.1
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc       489 May 16 17:23 boinc_task_state.xml
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc      1013 May 16 17:24 memory_monitor_summary.json
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc   1502367 May 16 17:24 agis_ddmendpoints.agis.ALL.json
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc    404219 May 16 17:24 log.50087078._007973.job.log.tgz.1
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc      6337 May 16 17:24 heartbeat_new.json
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc      6228 May 16 17:24 heartbeat.json
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc        95 May 16 17:24 pilot_heartbeat.json
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc        28 May 16 17:25 wrapper_checkpoint.txt
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc      8192 May 16 17:25 boinc_mmap_file
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc      4954 May 16 17:25 pilotlog.txt
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc   1294630 May 16 17:25 log.50087078._007973.job.log.1
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc       357 May 16 17:25 output.list
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc       410 May 16 17:25 runtime_log
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc   1720320 May 16 17:25 result.tar.gz
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc      8439 May 16 17:25 runtime_log.err
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc       656 May 16 17:25 61815780ed00.diag
[2026-05-16 17:25:15] -rw-r--r--. 1 boinc boinc     20601 May 16 17:25 stderr.txt
[2026-05-16 17:25:15] HITS file was successfully produced:
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc 186106375 May 16 17:22 shared/HITS.pool.root.1
[2026-05-16 17:25:15]  *** Contents of shared directory: ***
[2026-05-16 17:25:15] total 619300
[2026-05-16 17:25:15] -rw-r--r--. 2 boinc boinc 445613898 May 16 13:25 ATLAS.root_0
[2026-05-16 17:25:15] -rw-r--r--. 2 boinc boinc     15667 May 16 13:25 start_atlas.sh
[2026-05-16 17:25:15] -rw-r--r--. 2 boinc boinc    697431 May 16 13:25 input.tar.gz
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc 186106375 May 16 17:22 HITS.pool.root.1
[2026-05-16 17:25:15] -rw-------. 1 boinc boinc   1720320 May 16 17:25 result.tar.gz
17:25:17 (32379): run_atlas exited; CPU time 51448.521070
17:25:17 (32379): called boinc_finish(0)

</stderr_txt>
]]>

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