Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:39:41 (4048128): wrapper (7.7.26015): starting
00:39:41 (4048128): wrapper: running run_atlas (--nthreads 8)
[2026-05-15 00:39:41] Arguments: --nthreads 8
[2026-05-15 00:39:41] Threads: 8
[2026-05-15 00:39:41] Checking for CVMFS
[2026-05-15 00:39:42] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-15 00:39:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-15 00:39:43] Running cvmfs_config stat atlas.cern.ch
[2026-05-15 00:39:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-15 00:39:45] 2.13.3.0 9160 20973 355888 159529 0 267 31891909 39288833 15177 16776704 0 51484989 99.356 86416223 32481 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-05-15 00:39:45] CVMFS is ok
[2026-05-15 00:39:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-15 00:39:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-15 00:39:45] Further information can be found at the LHC@home message board.
[2026-05-15 00:39:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-15 00:39:45] Checking for apptainer binary...
[2026-05-15 00:39:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-15 00:39:45] Running /usr/bin/apptainer --version
[2026-05-15 00:39:45] apptainer version 1.4.5-3.el9
[2026-05-15 00:39:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-15 00:39:45] c-211-26.aglt2.org
[2026-05-15 00:39:45] apptainer works
[2026-05-15 00:39:45] Set ATHENA_PROC_NUMBER=8
[2026-05-15 00:39:45] Set ATHENA_CORE_NUMBER=8
[2026-05-15 00:39:45] Starting ATLAS job with PandaID=7139191350
[2026-05-15 00:39:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-15 00:47:27]  *** The last 200 lines of the pilot log: ***
[2026-05-15 00:47:27] 2026-05-15 04:46:30,154 | INFO     | extracted standard info from prmon json
[2026-05-15 00:47:27] 2026-05-15 04:46:30,155 | INFO     | extracted standard memory fields from prmon json
[2026-05-15 00:47:27] 2026-05-15 04:46:30,213 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-15 00:47:27] 2026-05-15 04:46:30,213 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-15 00:47:27] 2026-05-15 04:46:30,214 | WARNING  | wrong length of table data, x=[1778820180.0, 1778820241.0], y=[1336.0, 616485.0] (must be same and length>=4)
[2026-05-15 00:47:27] 2026-05-15 04:46:30,214 | INFO     | could have reported an average CPU frequency of 2900 MHz (4 samples)
[2026-05-15 00:47:27] 2026-05-15 04:46:30,214 | INFO     | ..............................
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . Timing measurements:
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . get job = 0 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . initial setup = 41 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . payload setup = 60 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . stage-in = 0 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . payload execution = 120 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . stage-out = 1 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,216 | INFO     | . log creation = 0 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,216 | INFO     | ..............................
[2026-05-15 00:47:27] 2026-05-15 04:46:30,216 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-15 00:47:27] 2026-05-15 04:46:30,217 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7139191350/pilotlog.txt
[2026-05-15 00:47:27] 2026-05-15 04:46:30,488 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-05-15 00:47:27] - Log from pilotlog.txt -
[2026-05-15 00:47:27] 2026-05-15 04:46:30,089 | INFO     | payload/TRF did not report the number of read events
[2026-05-15 00:47:27] 2026-05-15 04:46:30,153 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7139191350/memory_monitor_summary.json (trf name=prmon)
[2026-05-15 00:47:27] 2026-05-15 04:46:30,154 | INFO     | extracted standard info from prmon json
[2026-05-15 00:47:27] 2026-05-15 04:46:30,155 | INFO     | extracted standard memory fields from prmon json
[2026-05-15 00:47:27] 2026-05-15 04:46:30,213 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-15 00:47:27] 2026-05-15 04:46:30,213 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-15 00:47:27] 2026-05-15 04:46:30,214 | WARNING  | wrong length of table data, x=[1778820180.0, 1778820241.0], y=[1336.0, 616485.0] (must be same and length>=4)
[2026-05-15 00:47:27] 2026-05-15 04:46:30,214 | INFO     | could have reported an average CPU frequency of 2900 MHz (4 samples)
[2026-05-15 00:47:27] 2026-05-15 04:46:30,214 | INFO     | ..............................
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . Timing measurements:
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . get job = 0 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . initial setup = 41 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . payload setup = 60 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . stage-in = 0 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . payload execution = 120 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . stage-out = 1 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,216 | INFO     | . log creation = 0 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,216 | INFO     | ..............................
[2026-05-15 00:47:27] 2026-05-15 04:46:30,216 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-15 00:47:27] 2026-05-15 04:46:30,217 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7139191350/pilotlog.txt
[2026-05-15 00:47:27] 2026-05-15 04:46:30,489 | WARNING  | 
[2026-05-15 00:47:27] [begin log extracts]
[2026-05-15 00:47:27] - Log from pilotlog.txt -
[2026-05-15 00:47:27] 2026-05-15 04:46:30,089 | INFO     | payload/TRF did not report the number of read events
[2026-05-15 00:47:27] 2026-05-15 04:46:30,153 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7139191350/memory_monitor_summary.json (trf name=prmon)
[2026-05-15 00:47:27] 2026-05-15 04:46:30,154 | INFO     | extracted standard info from prmon json
[2026-05-15 00:47:27] 2026-05-15 04:46:30,155 | INFO     | extracted standard memory fields from prmon json
[2026-05-15 00:47:27] 2026-05-15 04:46:30,213 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-15 00:47:27] 2026-05-15 04:46:30,213 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-15 00:47:27] 2026-05-15 04:46:30,214 | WARNING  | wrong length of table data, x=[1778820180.0, 1778820241.0], y=[1336.0, 616485.0] (must be same and length>=4)
[2026-05-15 00:47:27] 2026-05-15 04:46:30,214 | INFO     | could have reported an average CPU frequency of 2900 MHz (4 samples)
[2026-05-15 00:47:27] 2026-05-15 04:46:30,214 | INFO     | ..............................
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . Timing measurements:
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . get job = 0 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . initial setup = 41 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . payload setup = 60 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . stage-in = 0 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . payload execution = 120 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,215 | INFO     | . stage-out = 1 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,216 | INFO     | . log creation = 0 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,216 | INFO     | ..............................
[2026-05-15 00:47:27] 2026-05-15 04:46:30,216 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-15 00:47:27] 2026-05-15 04:46:30,217 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7139191350/pilotlog.txt
[2026-05-15 00:47:27] [end log extracts]
[2026-05-15 00:47:27] 2026-05-15 04:46:30,489 | WARNING  | pilot_error_code(s) = [1305] (will report primary/first error code)
[2026-05-15 00:47:27] 2026-05-15 04:46:30,490 | WARNING  | pilot_error_diag(s) = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero retu
[2026-05-15 00:47:27] 2026-05-15 04:46:30,761 | INFO     | 
[2026-05-15 00:47:27] 2026-05-15 04:46:30,762 | INFO     | job summary report
[2026-05-15 00:47:27] 2026-05-15 04:46:30,762 | INFO     | --------------------------------------------------
[2026-05-15 00:47:27] 2026-05-15 04:46:30,762 | INFO     | PanDA job id: 7139191350
[2026-05-15 00:47:27] 2026-05-15 04:46:30,762 | INFO     | task id: 50250192
[2026-05-15 00:47:27] 2026-05-15 04:46:30,762 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-05-15 04:44:16,536 CRITICAL Transform executor raised TransformValidationExceptio
[2026-05-15 00:47:27] 2026-05-15 04:46:30,763 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-15 00:47:27] 2026-05-15 04:46:30,763 | INFO     | pilot state: failed 
[2026-05-15 00:47:27] 2026-05-15 04:46:30,763 | INFO     | transexitcode: 65
[2026-05-15 00:47:27] 2026-05-15 04:46:30,763 | INFO     | exeerrorcode: 65
[2026-05-15 00:47:27] 2026-05-15 04:46:30,763 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-05-15 00:47:27] 2026-05-15 04:46:30,763 | INFO     | exitcode: 65
[2026-05-15 00:47:27] 2026-05-15 04:46:30,764 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-05-15 00:47:27] 2026-05-15 04:46:30,764 | INFO     | cpuconsumptiontime: 32 s
[2026-05-15 00:47:27] 2026-05-15 04:46:30,764 | INFO     | nevents: 0
[2026-05-15 00:47:27] 2026-05-15 04:46:30,764 | INFO     | neventsw: 0
[2026-05-15 00:47:27] 2026-05-15 04:46:30,764 | INFO     | pid: 4074325
[2026-05-15 00:47:27] 2026-05-15 04:46:30,764 | INFO     | pgrp: 4074325
[2026-05-15 00:47:27] 2026-05-15 04:46:30,765 | INFO     | corecount: 8
[2026-05-15 00:47:27] 2026-05-15 04:46:30,765 | INFO     | event service: False
[2026-05-15 00:47:27] 2026-05-15 04:46:30,765 | INFO     | sizes: {0: 2265042, 1: 2265727, 2: 2267556, 187: 2290967, 190: 2295290, 307: 2295428}
[2026-05-15 00:47:27] 2026-05-15 04:46:30,765 | INFO     | --------------------------------------------------
[2026-05-15 00:47:27] 2026-05-15 04:46:30,765 | INFO     | 
[2026-05-15 00:47:27] 2026-05-15 04:46:30,765 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-05-15 00:47:27] 2026-05-15 04:46:31,049 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,050 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,050 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,050 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,074 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,074 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,074 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,075 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,075 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,075 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,075 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,075 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,075 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,076 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,076 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,076 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,076 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,076 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-15 00:47:27] 2026-05-15 04:46:31,076 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,076 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-15 00:47:27] 2026-05-15 04:46:31,077 | INFO     | job 7139191350 has completed (purged errors)
[2026-05-15 00:47:27] 2026-05-15 04:46:31,077 | INFO     | overall cleanup function is called
[2026-05-15 00:47:27] 2026-05-15 04:46:32,130 | INFO     | --- collectZombieJob: --- 10, [4074325]
[2026-05-15 00:47:27] 2026-05-15 04:46:32,130 | INFO     | zombie collector waiting for pid 4074325
[2026-05-15 00:47:27] 2026-05-15 04:46:32,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-15 00:47:27] 2026-05-15 04:46:32,131 | INFO     | collected zombie processes
[2026-05-15 00:47:27] 2026-05-15 04:46:32,131 | INFO     | will attempt to kill all subprocesses of pid=4074325
[2026-05-15 00:47:27] 2026-05-15 04:46:33,781 | INFO     | process IDs to be killed: [4074325] (in reverse order)
[2026-05-15 00:47:27] 2026-05-15 04:46:34,998 | WARNING  | found no corresponding commands to process id(s)
[2026-05-15 00:47:27] 2026-05-15 04:46:35,003 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-15 00:47:27] 2026-05-15 04:46:35,103 | INFO     | did not find any defunct processes belonging to 4074325
[2026-05-15 00:47:27] 2026-05-15 04:46:35,194 | INFO     | did not find any defunct processes belonging to 4074325
[2026-05-15 00:47:27] 2026-05-15 04:46:35,194 | INFO     | Ready for new job
[2026-05-15 00:47:27] 2026-05-15 04:46:35,196 | INFO     | ***************************************
[2026-05-15 00:47:27] 2026-05-15 04:46:35,196 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-15 00:47:27] 2026-05-15 04:46:35,196 | INFO     | ***************************************
[2026-05-15 00:47:27] 2026-05-15 04:46:35,196 | INFO     | 
[2026-05-15 00:47:27] 2026-05-15 04:46:35,237 | INFO     | architecture information:
[2026-05-15 00:47:27] 2026-05-15 04:46:35,252 | INFO     | executing command: cat /etc/os-release
[2026-05-15 00:47:27] 2026-05-15 04:46:35,373 | INFO     | cat /etc/os-release:
[2026-05-15 00:47:27] NAME="CentOS Linux"
[2026-05-15 00:47:27] VERSION="7 (Core)"
[2026-05-15 00:47:27] ID="centos"
[2026-05-15 00:47:27] ID_LIKE="rhel fedora"
[2026-05-15 00:47:27] VERSION_ID="7"
[2026-05-15 00:47:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-15 00:47:27] ANSI_COLOR="0;31"
[2026-05-15 00:47:27] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-15 00:47:27] HOME_URL="https://www.centos.org/"
[2026-05-15 00:47:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-15 00:47:27] 
[2026-05-15 00:47:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-15 00:47:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-15 00:47:27] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-15 00:47:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-15 00:47:27] 
[2026-05-15 00:47:27] 2026-05-15 04:46:35,377 | INFO     | ***************************************
[2026-05-15 00:47:27] 2026-05-15 04:46:35,884 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-05-15 00:47:27] 2026-05-15 04:46:35,985 | INFO     | sufficient remaining disk space (53082062848 B)
[2026-05-15 00:47:27] 2026-05-15 04:46:35,986 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-15 00:47:27] 2026-05-15 04:46:35,986 | INFO     | current server update state: UPDATING_FINAL
[2026-05-15 00:47:27] 2026-05-15 04:46:35,986 | INFO     | update_server=False
[2026-05-15 00:47:27] 2026-05-15 04:46:35,987 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-15 00:47:27] 2026-05-15 04:46:35,987 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-15 00:47:27] 2026-05-15 04:46:35,987 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-15 00:47:27] 2026-05-15 04:46:35,987 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-15 00:47:27] 2026-05-15 04:46:35,988 | INFO     | aborting loop
[2026-05-15 00:47:27] 2026-05-15 04:46:36,316 | INFO     | all data control threads have been joined
[2026-05-15 00:47:27] 2026-05-15 04:46:36,848 | INFO     | all payload control threads have been joined
[2026-05-15 00:47:27] 2026-05-15 04:46:36,993 | INFO     | [job] retrieve thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:36,997 | INFO     | [job] queue monitor thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:36,998 | INFO     | [job] job monitor thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:37,119 | INFO     | all job control threads have been joined
[2026-05-15 00:47:27] 2026-05-15 04:46:37,163 | INFO     | [payload] validate_pre thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:37,200 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:37,321 | INFO     | [data] control thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:37,509 | INFO     | [payload] validate_post thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:37,577 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-15 00:47:27] 2026-05-15 04:46:37,831 | INFO     | [job] validate thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:37,839 | INFO     | [job] create_data_payload thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:37,854 | INFO     | [payload] control thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:37,994 | INFO     | [data] copytool_out thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:38,125 | INFO     | [job] control thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:38,127 | INFO     | [payload] failed_post thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:38,300 | INFO     | [data] copytool_in thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:38,302 | INFO     | [payload] execute_payloads thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:46:41,587 | INFO     | [data] queue_monitor thread has finished
[2026-05-15 00:47:27] 2026-05-15 04:47:06,055 | INFO     | PID=4060622 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-15 00:47:27] 2026-05-15 04:47:06,056 | INFO     | .. there are 21 such processes running
[2026-05-15 00:47:27] 2026-05-15 04:47:06,075 | INFO     | found 0 job(s) in 20 queues
[2026-05-15 00:47:27] 2026-05-15 04:47:06,075 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-15 00:47:27] 2026-05-15 04:47:06,089 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-15 00:47:27] 2026-05-15 04:47:21,113 | INFO     | [monitor] cgroup control has ended
[2026-05-15 00:47:27] 2026-05-15 04:47:21,325 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139923443734336)>', '<ExcThread(monitor, started 139922920961792)>']
[2026-05-15 00:47:27] 2026-05-15 04:47:22,196 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-15 00:47:27] 2026-05-15 04:47:22,201 | INFO     | [monitor] control thread has ended
[2026-05-15 00:47:27] 2026-05-15 04:47:26,355 | INFO     | all workflow threads have been joined
[2026-05-15 00:47:27] 2026-05-15 04:47:26,355 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-15 00:47:27] 2026-05-15 04:47:26,356 | INFO     | traces error code: 0
[2026-05-15 00:47:27] 2026-05-15 04:47:26,356 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-15 00:47:27] 2026-05-15 04:47:26,838 [wrapper] ==== pilot stdout END ====
[2026-05-15 00:47:27] 2026-05-15 04:47:26,841 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-15 00:47:27] 2026-05-15 04:47:26,844 [wrapper] pilotpid: 4060622
[2026-05-15 00:47:27] 2026-05-15 04:47:26,847 [wrapper] Pilot exit status: 0
[2026-05-15 00:47:27] 2026-05-15 04:47:26,954 [wrapper] pandaids: 7139191350
[2026-05-15 00:47:27] 2026-05-15 04:47:27,385 [wrapper] cleanup supervisor_pilot 4060628 4060623
[2026-05-15 00:47:27] 2026-05-15 04:47:27,388 [wrapper] Test setup, not cleaning
[2026-05-15 00:47:27] 2026-05-15 04:47:27,392 [wrapper] apfmon messages muted
[2026-05-15 00:47:27] 2026-05-15 04:47:27,395 [wrapper] ==== wrapper stdout END ====
[2026-05-15 00:47:27] 2026-05-15 04:47:27,403 [wrapper] ==== wrapper stderr END ====
[2026-05-15 00:47:27]  *** Error codes and diagnostics ***
[2026-05-15 00:47:27]     "exeErrorCode": 65,
[2026-05-15 00:47:27]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-05-15 00:47:27]     "pilotErrorCode": 1305,
[2026-05-15 00:47:27]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-05-15 00:47:27]  *** Listing of results directory ***
[2026-05-15 00:47:27] total 106404
[2026-05-15 00:47:27] -rwx------. 1 boincer umatlas     36281 May 14 16:18 runpilot2-wrapper.sh
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas      5631 May 15 00:11 queuedata.json
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas    683926 May 15 00:12 pilot3.tar.gz
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas       100 May 15 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-15 00:47:27] -rwxr-xr-x. 1 boincer umatlas      7986 May 15 00:39 run_atlas
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas       105 May 15 00:39 job.xml
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas      6430 May 15 00:39 init_data.xml
[2026-05-15 00:47:27] -rw-r--r--. 2 boincer umatlas 104604704 May 15 00:39 EVNT.50238157._000173.pool.root.1
[2026-05-15 00:47:27] -rw-r--r--. 2 boincer umatlas     15667 May 15 00:39 start_atlas.sh
[2026-05-15 00:47:27] drwxrwx--x. 2 boincer umatlas      4096 May 15 00:39 shared
[2026-05-15 00:47:27] -rw-r--r--. 2 boincer umatlas    697447 May 15 00:39 input.tar.gz
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas         0 May 15 00:39 boinc_lockfile
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas      2559 May 15 00:39 pandaJob.out
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas        57 May 15 00:39 setup.sh.local
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas    993483 May 15 00:40 agis_schedconf.cvmfs.json
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas   1502367 May 15 00:40 agis_ddmendpoints.agis.ALL.json
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas       442 May 15 00:41 workernode_map.json
[2026-05-15 00:47:27] drwx------. 5 boincer umatlas      4096 May 15 00:41 pilot3
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas       482 May 15 00:44 boinc_task_state.xml
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas      1003 May 15 00:44 memory_monitor_summary.json
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas     22423 May 15 00:44 log.50250192._025967.job.log.tgz.1
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas      7122 May 15 00:46 heartbeat_new.json
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas      7084 May 15 00:46 heartbeat.json
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas        95 May 15 00:47 pilot_heartbeat.json
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas      4823 May 15 00:47 pilotlog.txt
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas      8192 May 15 00:47 boinc_mmap_file
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas        23 May 15 00:47 wrapper_checkpoint.txt
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas     90276 May 15 00:47 log.50250192._025967.job.log.1
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas       188 May 15 00:47 output.list
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas       410 May 15 00:47 runtime_log
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas    133120 May 15 00:47 result.tar.gz
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas      8811 May 15 00:47 runtime_log.err
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas       638 May 15 00:47 2e23338545d0.diag
[2026-05-15 00:47:27] -rw-r--r--. 1 boincer umatlas     21877 May 15 00:47 stderr.txt
[2026-05-15 00:47:27] No HITS result produced
[2026-05-15 00:47:27]  *** Contents of shared directory: ***
[2026-05-15 00:47:27] total 102992
[2026-05-15 00:47:27] -rw-r--r--. 2 boincer umatlas 104604704 May 15 00:39 ATLAS.root_0
[2026-05-15 00:47:27] -rw-r--r--. 2 boincer umatlas     15667 May 15 00:39 start_atlas.sh
[2026-05-15 00:47:27] -rw-r--r--. 2 boincer umatlas    697447 May 15 00:39 input.tar.gz
[2026-05-15 00:47:27] -rw-------. 1 boincer umatlas    133120 May 15 00:47 result.tar.gz
00:47:29 (4048128): run_atlas exited; CPU time 46.014882
00:47:29 (4048128): called boinc_finish(0)

</stderr_txt>
]]>

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