Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:06:19 (580042): wrapper (7.7.26015): starting
00:06:19 (580042): wrapper: running run_atlas (--nthreads 8)
[2026-05-15 00:06:19] Arguments: --nthreads 8
[2026-05-15 00:06:19] Threads: 8
[2026-05-15 00:06:19] Checking for CVMFS
[2026-05-15 00:06:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-15 00:06:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-15 00:06:19] Running cvmfs_config stat atlas.cern.ch
[2026-05-15 00:06:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-15 00:06:20] 2.13.3.0 12858 21016 222484 159527 1 897 27150140 32935937 17561 16776704 0 92310220 99.589 103130458 30445 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-05-15 00:06:20] CVMFS is ok
[2026-05-15 00:06:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-15 00:06:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-15 00:06:20] Further information can be found at the LHC@home message board.
[2026-05-15 00:06:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-15 00:06:20] Checking for apptainer binary...
[2026-05-15 00:06:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-15 00:06:20] Running /usr/bin/apptainer --version
[2026-05-15 00:06:20] apptainer version 1.4.5-3.el9
[2026-05-15 00:06:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-15 00:06:20] c-5-1.aglt2.org
[2026-05-15 00:06:20] apptainer works
[2026-05-15 00:06:20] Set ATHENA_PROC_NUMBER=8
[2026-05-15 00:06:20] Set ATHENA_CORE_NUMBER=8
[2026-05-15 00:06:21] Starting ATLAS job with PandaID=7139220712
[2026-05-15 00:06:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-15 00:15:19]  *** The last 200 lines of the pilot log: ***
[2026-05-15 00:15:19] 2026-05-15 04:13:52,533 | INFO     | extracted standard info from prmon json
[2026-05-15 00:15:19] 2026-05-15 04:13:52,533 | INFO     | extracted standard memory fields from prmon json
[2026-05-15 00:15:19] 2026-05-15 04:13:52,533 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-15 00:15:19] 2026-05-15 04:13:52,534 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-15 00:15:19] 2026-05-15 04:13:52,534 | WARNING  | wrong length of table data, x=[1778818195.0, 1778818256.0], y=[1592.0, 220098.0] (must be same and length>=4)
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | could have reported an average CPU frequency of 2599 MHz (4 samples)
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | ..............................
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . Timing measurements:
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . get job = 0 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . initial setup = 31 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . payload setup = 81 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . stage-in = 0 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,536 | INFO     | . payload execution = 151 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,536 | INFO     | . stage-out = 0 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,536 | INFO     | . log creation = 0 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,536 | INFO     | ..............................
[2026-05-15 00:15:19] 2026-05-15 04:13:52,543 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-15 00:15:19] 2026-05-15 04:13:52,544 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/2/PanDA_Pilot-7139220712/pilotlog.txt
[2026-05-15 00:15:19] 2026-05-15 04:13:52,631 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-05-15 00:15:19] - Log from pilotlog.txt -
[2026-05-15 00:15:19] 2026-05-15 04:13:52,507 | INFO     | payload/TRF did not report the number of read events
[2026-05-15 00:15:19] 2026-05-15 04:13:52,527 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7139220712/memory_monitor_summary.json (trf name=prmon)
[2026-05-15 00:15:19] 2026-05-15 04:13:52,533 | INFO     | extracted standard info from prmon json
[2026-05-15 00:15:19] 2026-05-15 04:13:52,533 | INFO     | extracted standard memory fields from prmon json
[2026-05-15 00:15:19] 2026-05-15 04:13:52,533 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-15 00:15:19] 2026-05-15 04:13:52,534 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-15 00:15:19] 2026-05-15 04:13:52,534 | WARNING  | wrong length of table data, x=[1778818195.0, 1778818256.0], y=[1592.0, 220098.0] (must be same and length>=4)
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | could have reported an average CPU frequency of 2599 MHz (4 samples)
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | ..............................
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . Timing measurements:
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . get job = 0 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . initial setup = 31 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . payload setup = 81 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . stage-in = 0 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,536 | INFO     | . payload execution = 151 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,536 | INFO     | . stage-out = 0 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,536 | INFO     | . log creation = 0 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,536 | INFO     | ..............................
[2026-05-15 00:15:19] 2026-05-15 04:13:52,543 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-15 00:15:19] 2026-05-15 04:13:52,544 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/2/PanDA_Pilot-7139220712/pilotlog.txt
[2026-05-15 00:15:19] 2026-05-15 04:13:52,631 | WARNING  | 
[2026-05-15 00:15:19] [begin log extracts]
[2026-05-15 00:15:19] - Log from pilotlog.txt -
[2026-05-15 00:15:19] 2026-05-15 04:13:52,507 | INFO     | payload/TRF did not report the number of read events
[2026-05-15 00:15:19] 2026-05-15 04:13:52,527 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7139220712/memory_monitor_summary.json (trf name=prmon)
[2026-05-15 00:15:19] 2026-05-15 04:13:52,533 | INFO     | extracted standard info from prmon json
[2026-05-15 00:15:19] 2026-05-15 04:13:52,533 | INFO     | extracted standard memory fields from prmon json
[2026-05-15 00:15:19] 2026-05-15 04:13:52,533 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-15 00:15:19] 2026-05-15 04:13:52,534 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-15 00:15:19] 2026-05-15 04:13:52,534 | WARNING  | wrong length of table data, x=[1778818195.0, 1778818256.0], y=[1592.0, 220098.0] (must be same and length>=4)
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | could have reported an average CPU frequency of 2599 MHz (4 samples)
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | ..............................
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . Timing measurements:
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . get job = 0 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . initial setup = 31 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . payload setup = 81 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,535 | INFO     | . stage-in = 0 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,536 | INFO     | . payload execution = 151 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,536 | INFO     | . stage-out = 0 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,536 | INFO     | . log creation = 0 s
[2026-05-15 00:15:19] 2026-05-15 04:13:52,536 | INFO     | ..............................
[2026-05-15 00:15:19] 2026-05-15 04:13:52,543 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-15 00:15:19] 2026-05-15 04:13:52,544 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/2/PanDA_Pilot-7139220712/pilotlog.txt
[2026-05-15 00:15:19] [end log extracts]
[2026-05-15 00:15:19] 2026-05-15 04:13:52,632 | WARNING  | pilot_error_code(s) = [1305] (will report primary/first error code)
[2026-05-15 00:15:19] 2026-05-15 04:13:52,633 | WARNING  | pilot_error_diag(s) = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero retu
[2026-05-15 00:15:19] 2026-05-15 04:13:53,088 | INFO     | 
[2026-05-15 00:15:19] 2026-05-15 04:13:53,089 | INFO     | job summary report
[2026-05-15 00:15:19] 2026-05-15 04:13:53,089 | INFO     | --------------------------------------------------
[2026-05-15 00:15:19] 2026-05-15 04:13:53,089 | INFO     | PanDA job id: 7139220712
[2026-05-15 00:15:19] 2026-05-15 04:13:53,089 | INFO     | task id: 50250192
[2026-05-15 00:15:19] 2026-05-15 04:13:53,089 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-05-15 04:11:43,255 CRITICAL Transform executor raised TransformValidationExceptio
[2026-05-15 00:15:19] 2026-05-15 04:13:53,089 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-15 00:15:19] 2026-05-15 04:13:53,089 | INFO     | pilot state: failed 
[2026-05-15 00:15:19] 2026-05-15 04:13:53,089 | INFO     | transexitcode: 65
[2026-05-15 00:15:19] 2026-05-15 04:13:53,089 | INFO     | exeerrorcode: 65
[2026-05-15 00:15:19] 2026-05-15 04:13:53,090 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-05-15 00:15:19] 2026-05-15 04:13:53,090 | INFO     | exitcode: 65
[2026-05-15 00:15:19] 2026-05-15 04:13:53,090 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-05-15 00:15:19] 2026-05-15 04:13:53,090 | INFO     | cpuconsumptiontime: 30 s
[2026-05-15 00:15:19] 2026-05-15 04:13:53,090 | INFO     | nevents: 0
[2026-05-15 00:15:19] 2026-05-15 04:13:53,097 | INFO     | neventsw: 0
[2026-05-15 00:15:19] 2026-05-15 04:13:53,097 | INFO     | pid: 623972
[2026-05-15 00:15:19] 2026-05-15 04:13:53,098 | INFO     | pgrp: 623972
[2026-05-15 00:15:19] 2026-05-15 04:13:53,098 | INFO     | corecount: 8
[2026-05-15 00:15:19] 2026-05-15 04:13:53,098 | INFO     | event service: False
[2026-05-15 00:15:19] 2026-05-15 04:13:53,098 | INFO     | sizes: {0: 2265699, 1: 2265727, 2: 2267556, 3: 2267556, 238: 2291063, 239: 2295514, 355: 2295652}
[2026-05-15 00:15:19] 2026-05-15 04:13:53,098 | INFO     | --------------------------------------------------
[2026-05-15 00:15:19] 2026-05-15 04:13:53,098 | INFO     | 
[2026-05-15 00:15:19] 2026-05-15 04:13:53,098 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-05-15 00:15:19] 2026-05-15 04:13:53,302 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,302 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,302 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,302 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,303 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,303 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,303 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,303 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,303 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,303 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,303 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,303 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,303 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,304 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,304 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,304 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,304 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,304 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-15 00:15:19] 2026-05-15 04:13:53,304 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,304 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-15 00:15:19] 2026-05-15 04:13:53,304 | INFO     | job 7139220712 has completed (purged errors)
[2026-05-15 00:15:19] 2026-05-15 04:13:53,305 | INFO     | overall cleanup function is called
[2026-05-15 00:15:19] 2026-05-15 04:13:54,318 | INFO     | --- collectZombieJob: --- 10, [623972]
[2026-05-15 00:15:19] 2026-05-15 04:13:54,318 | INFO     | zombie collector waiting for pid 623972
[2026-05-15 00:15:19] 2026-05-15 04:13:54,319 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-15 00:15:19] 2026-05-15 04:13:54,319 | INFO     | collected zombie processes
[2026-05-15 00:15:19] 2026-05-15 04:13:54,319 | INFO     | will attempt to kill all subprocesses of pid=623972
[2026-05-15 00:15:19] 2026-05-15 04:13:55,017 | INFO     | process IDs to be killed: [623972] (in reverse order)
[2026-05-15 00:15:19] 2026-05-15 04:13:55,361 | WARNING  | found no corresponding commands to process id(s)
[2026-05-15 00:15:19] 2026-05-15 04:13:55,362 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-15 00:15:19] 2026-05-15 04:13:55,449 | INFO     | did not find any defunct processes belonging to 623972
[2026-05-15 00:15:19] 2026-05-15 04:13:55,562 | INFO     | did not find any defunct processes belonging to 623972
[2026-05-15 00:15:19] 2026-05-15 04:13:55,569 | INFO     | Ready for new job
[2026-05-15 00:15:19] 2026-05-15 04:13:55,571 | INFO     | ***************************************
[2026-05-15 00:15:19] 2026-05-15 04:13:55,571 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-15 00:15:19] 2026-05-15 04:13:55,571 | INFO     | ***************************************
[2026-05-15 00:15:19] 2026-05-15 04:13:55,571 | INFO     | 
[2026-05-15 00:15:19] 2026-05-15 04:13:55,588 | INFO     | architecture information:
[2026-05-15 00:15:19] 2026-05-15 04:13:55,589 | INFO     | executing command: cat /etc/os-release
[2026-05-15 00:15:19] 2026-05-15 04:13:55,708 | INFO     | cat /etc/os-release:
[2026-05-15 00:15:19] NAME="CentOS Linux"
[2026-05-15 00:15:19] VERSION="7 (Core)"
[2026-05-15 00:15:19] ID="centos"
[2026-05-15 00:15:19] ID_LIKE="rhel fedora"
[2026-05-15 00:15:19] VERSION_ID="7"
[2026-05-15 00:15:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-15 00:15:19] ANSI_COLOR="0;31"
[2026-05-15 00:15:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-15 00:15:19] HOME_URL="https://www.centos.org/"
[2026-05-15 00:15:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-15 00:15:19] 
[2026-05-15 00:15:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-15 00:15:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-15 00:15:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-15 00:15:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-15 00:15:19] 
[2026-05-15 00:15:19] 2026-05-15 04:13:55,708 | INFO     | ***************************************
[2026-05-15 00:15:19] 2026-05-15 04:13:56,213 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-05-15 00:15:19] 2026-05-15 04:13:56,397 | INFO     | sufficient remaining disk space (76057411584 B)
[2026-05-15 00:15:19] 2026-05-15 04:13:56,397 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-15 00:15:19] 2026-05-15 04:13:56,397 | INFO     | current server update state: UPDATING_FINAL
[2026-05-15 00:15:19] 2026-05-15 04:13:56,398 | INFO     | update_server=False
[2026-05-15 00:15:19] 2026-05-15 04:13:56,398 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-15 00:15:19] 2026-05-15 04:13:56,398 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-15 00:15:19] 2026-05-15 04:13:56,619 | INFO     | all payload control threads have been joined
[2026-05-15 00:15:19] 2026-05-15 04:13:56,949 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-15 00:15:19] 2026-05-15 04:13:56,950 | INFO     | aborting loop
[2026-05-15 00:15:19] 2026-05-15 04:13:57,017 | INFO     | all data control threads have been joined
[2026-05-15 00:15:19] 2026-05-15 04:13:57,403 | INFO     | [job] retrieve thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:57,451 | INFO     | [payload] validate_post thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:57,549 | INFO     | [payload] failed_post thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:57,625 | INFO     | [payload] control thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:57,693 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-15 00:15:19] 2026-05-15 04:13:57,888 | INFO     | all job control threads have been joined
[2026-05-15 00:15:19] 2026-05-15 04:13:57,955 | INFO     | [job] job monitor thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:58,024 | INFO     | [data] control thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:58,098 | INFO     | [job] validate thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:58,103 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-15 00:15:19] 2026-05-15 04:13:58,518 | INFO     | [job] create_data_payload thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:58,526 | INFO     | [data] copytool_in thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:58,635 | INFO     | [payload] validate_pre thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:58,814 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:58,850 | INFO     | [payload] execute_payloads thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:58,894 | INFO     | [job] control thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:59,110 | INFO     | [job] queue monitor thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:13:59,700 | INFO     | [data] copytool_out thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:14:00,406 | INFO     | [data] queue_monitor thread has finished
[2026-05-15 00:15:19] 2026-05-15 04:14:25,723 | INFO     | PID=596187 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-15 00:15:19] 2026-05-15 04:14:25,724 | INFO     | .. there are 21 such processes running
[2026-05-15 00:15:19] 2026-05-15 04:14:25,724 | INFO     | found 0 job(s) in 20 queues
[2026-05-15 00:15:19] 2026-05-15 04:14:25,724 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-15 00:15:19] 2026-05-15 04:14:25,724 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-15 00:15:19] 2026-05-15 04:14:54,428 | INFO     | [monitor] cgroup control has ended
[2026-05-15 00:15:19] 2026-05-15 04:14:55,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140683357103936)>', '<ExcThread(monitor, started 140683018262272)>']
[2026-05-15 00:15:19] 2026-05-15 04:14:55,910 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-15 00:15:19] 2026-05-15 04:14:55,911 | INFO     | [monitor] control thread has ended
[2026-05-15 00:15:19] 2026-05-15 04:15:00,898 | INFO     | all workflow threads have been joined
[2026-05-15 00:15:19] 2026-05-15 04:15:00,899 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-15 00:15:19] 2026-05-15 04:15:00,899 | INFO     | traces error code: 0
[2026-05-15 00:15:19] 2026-05-15 04:15:00,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-15 00:15:19] 2026-05-15 04:15:01,048 [wrapper] ==== pilot stdout END ====
[2026-05-15 00:15:19] 2026-05-15 04:15:01,051 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-15 00:15:19] 2026-05-15 04:15:01,054 [wrapper] pilotpid: 596187
[2026-05-15 00:15:19] 2026-05-15 04:15:01,073 [wrapper] Pilot exit status: 0
[2026-05-15 00:15:19] 2026-05-15 04:15:01,168 [wrapper] pandaids: 7139220712
[2026-05-15 00:15:19] 2026-05-15 04:15:01,387 [wrapper] cleanup supervisor_pilot  596235 596188
[2026-05-15 00:15:19] 2026-05-15 04:15:01,390 [wrapper] Test setup, not cleaning
[2026-05-15 00:15:19] 2026-05-15 04:15:01,393 [wrapper] apfmon messages muted
[2026-05-15 00:15:19] 2026-05-15 04:15:01,395 [wrapper] ==== wrapper stdout END ====
[2026-05-15 00:15:19] 2026-05-15 04:15:01,398 [wrapper] ==== wrapper stderr END ====
[2026-05-15 00:15:19]  *** Error codes and diagnostics ***
[2026-05-15 00:15:19]     "exeErrorCode": 65,
[2026-05-15 00:15:19]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-05-15 00:15:19]     "pilotErrorCode": 1305,
[2026-05-15 00:15:19]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-05-15 00:15:19]  *** Listing of results directory ***
[2026-05-15 00:15:19] total 102904
[2026-05-15 00:15:19] -rwx------. 1 boincer umatlas     36281 May 14 17:07 runpilot2-wrapper.sh
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas      5631 May 14 23:08 queuedata.json
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas    683926 May 14 23:08 pilot3.tar.gz
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas       100 May 15 00:06 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-15 00:15:19] -rwxr-xr-x. 1 boincer umatlas      7986 May 15 00:06 run_atlas
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas       105 May 15 00:06 job.xml
[2026-05-15 00:15:19] -rw-r--r--. 2 boincer umatlas 101024244 May 15 00:06 EVNT.50238157._000304.pool.root.1
[2026-05-15 00:15:19] drwxrwx--x. 2 boincer umatlas      4096 May 15 00:06 shared
[2026-05-15 00:15:19] -rw-r--r--. 2 boincer umatlas    697451 May 15 00:06 input.tar.gz
[2026-05-15 00:15:19] -rw-r--r--. 2 boincer umatlas     15667 May 15 00:06 start_atlas.sh
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas         0 May 15 00:06 boinc_lockfile
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas      2559 May 15 00:06 pandaJob.out
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas        57 May 15 00:06 setup.sh.local
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas    993483 May 15 00:07 agis_schedconf.cvmfs.json
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas   1502367 May 15 00:07 agis_ddmendpoints.agis.ALL.json
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas       439 May 15 00:07 workernode_map.json
[2026-05-15 00:15:19] drwx------. 5 boincer umatlas      4096 May 15 00:07 pilot3
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas      6569 May 15 00:09 init_data.xml
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas       482 May 15 00:11 boinc_task_state.xml
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas      1003 May 15 00:11 memory_monitor_summary.json
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas     22334 May 15 00:11 log.50250192._027660.job.log.tgz.1
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas        95 May 15 00:13 pilot_heartbeat.json
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas      7139 May 15 00:13 heartbeat_new.json
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas      7101 May 15 00:13 heartbeat.json
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas      4822 May 15 00:15 pilotlog.txt
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas     92815 May 15 00:15 log.50250192._027660.job.log.1
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas       188 May 15 00:15 output.list
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas       410 May 15 00:15 runtime_log
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas    133120 May 15 00:15 result.tar.gz
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas      8796 May 15 00:15 runtime_log.err
[2026-05-15 00:15:19] -rw-------. 1 boincer umatlas       638 May 15 00:15 3996ca15121d.diag
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas        23 May 15 00:15 wrapper_checkpoint.txt
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas      8192 May 15 00:15 boinc_mmap_file
[2026-05-15 00:15:19] -rw-r--r--. 1 boincer umatlas     21876 May 15 00:15 stderr.txt
[2026-05-15 00:15:20] No HITS result produced
[2026-05-15 00:15:20]  *** Contents of shared directory: ***
[2026-05-15 00:15:20] total 99492
[2026-05-15 00:15:20] -rw-r--r--. 2 boincer umatlas 101024244 May 15 00:06 ATLAS.root_0
[2026-05-15 00:15:20] -rw-r--r--. 2 boincer umatlas    697451 May 15 00:06 input.tar.gz
[2026-05-15 00:15:20] -rw-r--r--. 2 boincer umatlas     15667 May 15 00:06 start_atlas.sh
[2026-05-15 00:15:20] -rw-------. 1 boincer umatlas    133120 May 15 00:15 result.tar.gz
00:15:21 (580042): run_atlas exited; CPU time 43.707051
00:15:21 (580042): called boinc_finish(0)

</stderr_txt>
]]>

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