Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
05:51:18 (18149): wrapper (7.7.26015): starting
05:51:18 (18149): wrapper: running run_atlas (--nthreads 8)
[2026-05-15 05:51:18] Arguments: --nthreads 8
[2026-05-15 05:51:18] Threads: 8
[2026-05-15 05:51:18] Checking for CVMFS
[2026-05-15 05:51:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-15 05:51:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-15 05:51:19] Running cvmfs_config stat atlas.cern.ch
[2026-05-15 05:51:19] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-15 05:51:19] 2.11.2.0 15723 42407 102356 159527 1 239 13023073 25165824 410 130560 0 23557532 99.958 8525244 9181 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-15 05:51:19] CVMFS is ok
[2026-05-15 05:51:19] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-15 05:51:19] Checking for apptainer binary...
[2026-05-15 05:51:19] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-15 05:51:19] Running /usr/bin/apptainer --version
[2026-05-15 05:51:19] apptainer version 1.3.2-1.el7
[2026-05-15 05:51:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-15 05:51:20] cg-vwn428.simple-grid.lan
[2026-05-15 05:51:20] apptainer works
[2026-05-15 05:51:20] Set ATHENA_PROC_NUMBER=8
[2026-05-15 05:51:20] Set ATHENA_CORE_NUMBER=8
[2026-05-15 05:51:20] Starting ATLAS job with PandaID=7139219453
[2026-05-15 05:51:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-15 05:55:47]  *** The last 200 lines of the pilot log: ***
[2026-05-15 05:55:47] 2026-05-15 03:54:48,598 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-15 05:55:47] 2026-05-15 03:54:48,598 | WARNING  | found no stored workdir sizes
[2026-05-15 05:55:47] 2026-05-15 03:54:48,598 | INFO     | will not add max space = 0 B to job metrics
[2026-05-15 05:55:47] 2026-05-15 03:54:48,599 | WARNING  | wrong length of table data, x=[1778817133.0], y=[1235.0] (must be same and length>=4)
[2026-05-15 05:55:47] 2026-05-15 03:54:48,599 | INFO     | could have reported an average CPU frequency of 1999 MHz (4 samples)
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | ..............................
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . Timing measurements:
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . get job = 0 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . initial setup = 6 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . payload setup = 13 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . stage-in = 0 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . payload execution = 38 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . stage-out = 0 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . log creation = 0 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,601 | INFO     | ..............................
[2026-05-15 05:55:47] 2026-05-15 03:54:48,601 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-15 05:55:47] 2026-05-15 03:54:48,601 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/6/PanDA_Pilot-7139219453/pilotlog.txt
[2026-05-15 05:55:47] 2026-05-15 03:54:48,630 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-05-15 05:55:47] - Log from pilotlog.txt -
[2026-05-15 05:55:47] 2026-05-15 03:54:48,597 | INFO     | extracted standard info from prmon json
[2026-05-15 05:55:47] 2026-05-15 03:54:48,597 | INFO     | extracted standard memory fields from prmon json
[2026-05-15 05:55:47] 2026-05-15 03:54:48,598 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-15 05:55:47] 2026-05-15 03:54:48,598 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-15 05:55:47] 2026-05-15 03:54:48,598 | WARNING  | found no stored workdir sizes
[2026-05-15 05:55:47] 2026-05-15 03:54:48,598 | INFO     | will not add max space = 0 B to job metrics
[2026-05-15 05:55:47] 2026-05-15 03:54:48,599 | WARNING  | wrong length of table data, x=[1778817133.0], y=[1235.0] (must be same and length>=4)
[2026-05-15 05:55:47] 2026-05-15 03:54:48,599 | INFO     | could have reported an average CPU frequency of 1999 MHz (4 samples)
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | ..............................
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . Timing measurements:
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . get job = 0 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . initial setup = 6 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . payload setup = 13 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . stage-in = 0 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . payload execution = 38 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . stage-out = 0 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . log creation = 0 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,601 | INFO     | ..............................
[2026-05-15 05:55:47] 2026-05-15 03:54:48,601 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-15 05:55:47] 2026-05-15 03:54:48,601 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/6/PanDA_Pilot-7139219453/pilotlog.txt
[2026-05-15 05:55:47] 2026-05-15 03:54:48,630 | WARNING  | 
[2026-05-15 05:55:47] [begin log extracts]
[2026-05-15 05:55:47] - Log from pilotlog.txt -
[2026-05-15 05:55:47] 2026-05-15 03:54:48,597 | INFO     | extracted standard info from prmon json
[2026-05-15 05:55:47] 2026-05-15 03:54:48,597 | INFO     | extracted standard memory fields from prmon json
[2026-05-15 05:55:47] 2026-05-15 03:54:48,598 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-15 05:55:47] 2026-05-15 03:54:48,598 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-15 05:55:47] 2026-05-15 03:54:48,598 | WARNING  | found no stored workdir sizes
[2026-05-15 05:55:47] 2026-05-15 03:54:48,598 | INFO     | will not add max space = 0 B to job metrics
[2026-05-15 05:55:47] 2026-05-15 03:54:48,599 | WARNING  | wrong length of table data, x=[1778817133.0], y=[1235.0] (must be same and length>=4)
[2026-05-15 05:55:47] 2026-05-15 03:54:48,599 | INFO     | could have reported an average CPU frequency of 1999 MHz (4 samples)
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | ..............................
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . Timing measurements:
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . get job = 0 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . initial setup = 6 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . payload setup = 13 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . stage-in = 0 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . payload execution = 38 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . stage-out = 0 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,600 | INFO     | . log creation = 0 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,601 | INFO     | ..............................
[2026-05-15 05:55:47] 2026-05-15 03:54:48,601 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-15 05:55:47] 2026-05-15 03:54:48,601 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/6/PanDA_Pilot-7139219453/pilotlog.txt
[2026-05-15 05:55:47] [end log extracts]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,630 | WARNING  | pilot_error_code(s) = [1305] (will report primary/first error code)
[2026-05-15 05:55:47] 2026-05-15 03:54:48,631 | WARNING  | pilot_error_diag(s) = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero retu
[2026-05-15 05:55:47] 2026-05-15 03:54:48,743 | INFO     | 
[2026-05-15 05:55:47] 2026-05-15 03:54:48,743 | INFO     | job summary report
[2026-05-15 05:55:47] 2026-05-15 03:54:48,743 | INFO     | --------------------------------------------------
[2026-05-15 05:55:47] 2026-05-15 03:54:48,743 | INFO     | PanDA job id: 7139219453
[2026-05-15 05:55:47] 2026-05-15 03:54:48,744 | INFO     | task id: 50250192
[2026-05-15 05:55:47] 2026-05-15 03:54:48,744 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-05-15 03:52:40,390 CRITICAL Transform executor raised TransformValidationExceptio
[2026-05-15 05:55:47] 2026-05-15 03:54:48,744 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-15 05:55:47] 2026-05-15 03:54:48,744 | INFO     | pilot state: failed 
[2026-05-15 05:55:47] 2026-05-15 03:54:48,744 | INFO     | transexitcode: 65
[2026-05-15 05:55:47] 2026-05-15 03:54:48,744 | INFO     | exeerrorcode: 65
[2026-05-15 05:55:47] 2026-05-15 03:54:48,744 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-05-15 05:55:47] 2026-05-15 03:54:48,744 | INFO     | exitcode: 65
[2026-05-15 05:55:47] 2026-05-15 03:54:48,744 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-05-15 05:55:47] 2026-05-15 03:54:48,744 | INFO     | cpuconsumptiontime: 28 s
[2026-05-15 05:55:47] 2026-05-15 03:54:48,744 | INFO     | nevents: 0
[2026-05-15 05:55:47] 2026-05-15 03:54:48,744 | INFO     | neventsw: 0
[2026-05-15 05:55:47] 2026-05-15 03:54:48,745 | INFO     | pid: 26309
[2026-05-15 05:55:47] 2026-05-15 03:54:48,745 | INFO     | pgrp: 26309
[2026-05-15 05:55:47] 2026-05-15 03:54:48,745 | INFO     | corecount: 8
[2026-05-15 05:55:47] 2026-05-15 03:54:48,745 | INFO     | event service: False
[2026-05-15 05:55:47] 2026-05-15 03:54:48,745 | INFO     | sizes: {0: 2265694, 1: 2267523, 12: 2267523, 55: 2295174, 57: 2295174, 175: 2295340}
[2026-05-15 05:55:47] 2026-05-15 03:54:48,745 | INFO     | --------------------------------------------------
[2026-05-15 05:55:47] 2026-05-15 03:54:48,745 | INFO     | 
[2026-05-15 05:55:47] 2026-05-15 03:54:48,745 | INFO     | executing command: ls -lF /var/lib/boinc/slots/6
[2026-05-15 05:55:47] 2026-05-15 03:54:48,769 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,770 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,770 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,770 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,770 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,770 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,770 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,771 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,771 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,771 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,771 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,771 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,771 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,771 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,771 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,771 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,772 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,772 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-15 05:55:47] 2026-05-15 03:54:48,772 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,772 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-15 05:55:47] 2026-05-15 03:54:48,772 | INFO     | job 7139219453 has completed (purged errors)
[2026-05-15 05:55:47] 2026-05-15 03:54:48,772 | INFO     | overall cleanup function is called
[2026-05-15 05:55:47] 2026-05-15 03:54:49,779 | INFO     | --- collectZombieJob: --- 10, [26309]
[2026-05-15 05:55:47] 2026-05-15 03:54:49,779 | INFO     | zombie collector waiting for pid 26309
[2026-05-15 05:55:47] 2026-05-15 03:54:49,779 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-15 05:55:47] 2026-05-15 03:54:49,779 | INFO     | collected zombie processes
[2026-05-15 05:55:47] 2026-05-15 03:54:49,779 | INFO     | will attempt to kill all subprocesses of pid=26309
[2026-05-15 05:55:47] 2026-05-15 03:54:49,838 | INFO     | process IDs to be killed: [26309] (in reverse order)
[2026-05-15 05:55:47] 2026-05-15 03:54:49,883 | WARNING  | found no corresponding commands to process id(s)
[2026-05-15 05:55:47] 2026-05-15 03:54:49,883 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-15 05:55:47] 2026-05-15 03:54:49,886 | INFO     | did not find any defunct processes belonging to 26309
[2026-05-15 05:55:47] 2026-05-15 03:54:49,887 | INFO     | did not find any defunct processes belonging to 26309
[2026-05-15 05:55:47] 2026-05-15 03:54:49,888 | INFO     | Ready for new job
[2026-05-15 05:55:47] 2026-05-15 03:54:49,889 | INFO     | ***************************************
[2026-05-15 05:55:47] 2026-05-15 03:54:49,889 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-15 05:55:47] 2026-05-15 03:54:49,889 | INFO     | ***************************************
[2026-05-15 05:55:47] 2026-05-15 03:54:49,889 | INFO     | 
[2026-05-15 05:55:47] 2026-05-15 03:54:49,890 | INFO     | pilot is running in a VM
[2026-05-15 05:55:47] 2026-05-15 03:54:49,890 | INFO     | architecture information:
[2026-05-15 05:55:47] 2026-05-15 03:54:49,891 | INFO     | executing command: cat /etc/os-release
[2026-05-15 05:55:47] 2026-05-15 03:54:49,913 | INFO     | cat /etc/os-release:
[2026-05-15 05:55:47] NAME="CentOS Linux"
[2026-05-15 05:55:47] VERSION="7 (Core)"
[2026-05-15 05:55:47] ID="centos"
[2026-05-15 05:55:47] ID_LIKE="rhel fedora"
[2026-05-15 05:55:47] VERSION_ID="7"
[2026-05-15 05:55:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-15 05:55:47] ANSI_COLOR="0;31"
[2026-05-15 05:55:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-15 05:55:47] HOME_URL="https://www.centos.org/"
[2026-05-15 05:55:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-15 05:55:47] 
[2026-05-15 05:55:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-15 05:55:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-15 05:55:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-15 05:55:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-15 05:55:47] 
[2026-05-15 05:55:47] 2026-05-15 03:54:49,913 | INFO     | ***************************************
[2026-05-15 05:55:47] 2026-05-15 03:54:50,416 | INFO     | executing command: df -mP /var/lib/boinc/slots/6
[2026-05-15 05:55:47] 2026-05-15 03:54:50,434 | INFO     | sufficient remaining disk space (498135465984 B)
[2026-05-15 05:55:47] 2026-05-15 03:54:50,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-15 05:55:47] 2026-05-15 03:54:50,434 | INFO     | current server update state: UPDATING_FINAL
[2026-05-15 05:55:47] 2026-05-15 03:54:50,435 | INFO     | update_server=False
[2026-05-15 05:55:47] 2026-05-15 03:54:50,435 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-15 05:55:47] 2026-05-15 03:54:50,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-15 05:55:47] 2026-05-15 03:54:50,436 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-15 05:55:47] 2026-05-15 03:54:50,436 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-15 05:55:47] 2026-05-15 03:54:50,436 | INFO     | aborting loop
[2026-05-15 05:55:47] 2026-05-15 03:54:50,436 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-15 05:55:47] 2026-05-15 03:54:50,880 | INFO     | all job control threads have been joined
[2026-05-15 05:55:47] 2026-05-15 03:54:51,109 | INFO     | all payload control threads have been joined
[2026-05-15 05:55:47] 2026-05-15 03:54:51,311 | INFO     | all data control threads have been joined
[2026-05-15 05:55:47] 2026-05-15 03:54:51,440 | INFO     | [job] retrieve thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:51,441 | INFO     | [job] job monitor thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:51,442 | INFO     | [job] queue monitor thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:51,477 | INFO     | [payload] validate_pre thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:51,788 | INFO     | [data] copytool_in thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:51,886 | INFO     | [job] control thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:51,953 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:52,114 | INFO     | [payload] control thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:52,318 | INFO     | [data] control thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:52,416 | INFO     | [job] validate thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:52,441 | INFO     | [data] copytool_out thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:52,651 | INFO     | [payload] execute_payloads thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:52,728 | INFO     | [job] create_data_payload thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:52,984 | INFO     | [payload] failed_post thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:52,993 | INFO     | [payload] validate_post thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:54:54,442 | INFO     | [data] queue_monitor thread has finished
[2026-05-15 05:55:47] 2026-05-15 03:55:20,687 | INFO     | PID=21883 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-15 05:55:47] 2026-05-15 03:55:20,688 | INFO     | .. there are 2 such processes running
[2026-05-15 05:55:47] 2026-05-15 03:55:20,688 | INFO     | found 0 job(s) in 20 queues
[2026-05-15 05:55:47] 2026-05-15 03:55:20,688 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-15 05:55:47] 2026-05-15 03:55:20,688 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-15 05:55:47] 2026-05-15 03:55:41,477 | INFO     | [monitor] cgroup control has ended
[2026-05-15 05:55:47] 2026-05-15 03:55:42,016 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140022069905216)>', '<ExcThread(monitor, started 140021554206464)>']
[2026-05-15 05:55:47] 2026-05-15 03:55:42,778 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-15 05:55:47] 2026-05-15 03:55:42,778 | INFO     | [monitor] control thread has ended
[2026-05-15 05:55:47] 2026-05-15 03:55:47,042 | INFO     | all workflow threads have been joined
[2026-05-15 05:55:47] 2026-05-15 03:55:47,042 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-15 05:55:47] 2026-05-15 03:55:47,043 | INFO     | traces error code: 0
[2026-05-15 05:55:47] 2026-05-15 03:55:47,043 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-15 05:55:47] 2026-05-15 03:55:47,176 [wrapper] ==== pilot stdout END ====
[2026-05-15 05:55:47] 2026-05-15 03:55:47,184 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-15 05:55:47] 2026-05-15 03:55:47,189 [wrapper] pilotpid: 21883
[2026-05-15 05:55:47] 2026-05-15 03:55:47,195 [wrapper] Pilot exit status: 0
[2026-05-15 05:55:47] 2026-05-15 03:55:47,219 [wrapper] pandaids: 7139219453
[2026-05-15 05:55:47] 2026-05-15 03:55:47,250 [wrapper] cleanup supervisor_pilot 21889 21884
[2026-05-15 05:55:47] 2026-05-15 03:55:47,255 [wrapper] Test setup, not cleaning
[2026-05-15 05:55:47] 2026-05-15 03:55:47,260 [wrapper] apfmon messages muted
[2026-05-15 05:55:47] 2026-05-15 03:55:47,266 [wrapper] ==== wrapper stdout END ====
[2026-05-15 05:55:47] 2026-05-15 03:55:47,270 [wrapper] ==== wrapper stderr END ====
[2026-05-15 05:55:47]  *** Error codes and diagnostics ***
[2026-05-15 05:55:47]     "exeErrorCode": 65,
[2026-05-15 05:55:47]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-05-15 05:55:47]     "pilotErrorCode": 1305,
[2026-05-15 05:55:47]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-05-15 05:55:47]  *** Listing of results directory ***
[2026-05-15 05:55:47] total 106668
[2026-05-15 05:55:47] -rwx------. 1 boinc boinc     36281 May 14 23:06 runpilot2-wrapper.sh
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc      5631 May 15 05:08 queuedata.json
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc    683926 May 15 05:08 pilot3.tar.gz
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc       100 May 15 05:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-15 05:55:47] -rwxr-xr-x. 1 boinc boinc      7986 May 15 05:51 run_atlas
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc       105 May 15 05:51 job.xml
[2026-05-15 05:55:47] -rw-r--r--. 2 boinc boinc 104935208 May 15 05:51 EVNT.50238157._000288.pool.root.1
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc      6306 May 15 05:51 init_data.xml
[2026-05-15 05:55:47] -rw-r--r--. 2 boinc boinc     15667 May 15 05:51 start_atlas.sh
[2026-05-15 05:55:47] drwxrwx--x. 2 boinc boinc        68 May 15 05:51 shared
[2026-05-15 05:55:47] -rw-r--r--. 2 boinc boinc    697449 May 15 05:51 input.tar.gz
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc         0 May 15 05:51 boinc_lockfile
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc      2557 May 15 05:51 pandaJob.out
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc    993483 May 15 05:51 agis_schedconf.cvmfs.json
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc   1502367 May 15 05:51 agis_ddmendpoints.agis.ALL.json
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc       415 May 15 05:51 workernode_map.json
[2026-05-15 05:55:47] drwx------. 5 boinc boinc      4096 May 15 05:51 pilot3
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc       928 May 15 05:52 memory_monitor_summary.json
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc     20390 May 15 05:52 log.50250192._027396.job.log.tgz.1
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc       482 May 15 05:53 boinc_task_state.xml
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc        95 May 15 05:54 pilot_heartbeat.json
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc      6989 May 15 05:54 heartbeat_new.json
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc      6951 May 15 05:54 heartbeat.json
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc      8192 May 15 05:55 boinc_mmap_file
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc        23 May 15 05:55 wrapper_checkpoint.txt
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc      4883 May 15 05:55 pilotlog.txt
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc     75710 May 15 05:55 log.50250192._027396.job.log.1
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc       188 May 15 05:55 output.list
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc       410 May 15 05:55 runtime_log
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc    112640 May 15 05:55 result.tar.gz
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc      8285 May 15 05:55 runtime_log.err
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc       637 May 15 05:55 393f90ae5003.diag
[2026-05-15 05:55:47] -rw-r--r--. 1 boinc boinc     21276 May 15 05:55 stderr.txt
[2026-05-15 05:55:47] No HITS result produced
[2026-05-15 05:55:47]  *** Contents of shared directory: ***
[2026-05-15 05:55:47] total 103288
[2026-05-15 05:55:47] -rw-r--r--. 2 boinc boinc 104935208 May 15 05:51 ATLAS.root_0
[2026-05-15 05:55:47] -rw-r--r--. 2 boinc boinc     15667 May 15 05:51 start_atlas.sh
[2026-05-15 05:55:47] -rw-r--r--. 2 boinc boinc    697449 May 15 05:51 input.tar.gz
[2026-05-15 05:55:47] -rw-------. 1 boinc boinc    112640 May 15 05:55 result.tar.gz
05:55:48 (18149): run_atlas exited; CPU time 28.193997
05:55:48 (18149): called boinc_finish(0)

</stderr_txt>
]]>

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