Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:53:30 (4077522): wrapper (7.7.26015): starting
23:53:30 (4077522): wrapper: running run_atlas (--nthreads 12)
[2026-05-14 23:53:30] Arguments: --nthreads 12
[2026-05-14 23:53:30] Threads: 12
[2026-05-14 23:53:30] Checking for CVMFS
[2026-05-14 23:53:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-14 23:53:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-14 23:53:32] Running cvmfs_config stat atlas.cern.ch
[2026-05-14 23:53:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-14 23:53:52] 2.13.3.0 8018 20927 129524 159527 1 244 27671742 39288832 4581 16776704 0 22902266 99.946 14658956 36051 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-05-14 23:53:52] CVMFS is ok
[2026-05-14 23:53:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-14 23:53:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-14 23:53:52] Further information can be found at the LHC@home message board.
[2026-05-14 23:53:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-14 23:53:52] Checking for apptainer binary...
[2026-05-14 23:53:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-14 23:53:52] Running /usr/bin/apptainer --version
[2026-05-14 23:53:52] apptainer version 1.4.5-3.el9
[2026-05-14 23:53:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-14 23:53:53] c-210-9.aglt2.org
[2026-05-14 23:53:53] apptainer works
[2026-05-14 23:53:54] Set ATHENA_PROC_NUMBER=12
[2026-05-14 23:53:54] Set ATHENA_CORE_NUMBER=12
[2026-05-14 23:53:54] Starting ATLAS job with PandaID=7139193489
[2026-05-14 23:53:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-15 00:01:31]  *** The last 200 lines of the pilot log: ***
[2026-05-15 00:01:31] 2026-05-15 04:00:54,640 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-15 00:01:31] 2026-05-15 04:00:54,640 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | WARNING  | wrong length of table data, x=[1778817486.0], y=[1412.0] (must be same and length>=4)
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | could have reported an average CPU frequency of 2600 MHz (4 samples)
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | ..............................
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . Timing measurements:
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . get job = 0 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . initial setup = 47 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . payload setup = 74 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . stage-in = 0 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | . payload execution = 61 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | . stage-out = 1 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | . log creation = 0 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | ..............................
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7139193489/pilotlog.txt
[2026-05-15 00:01:31] 2026-05-15 04:00:54,808 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-05-15 00:01:31] - Log from pilotlog.txt -
[2026-05-15 00:01:31] 2026-05-15 04:00:54,606 | INFO     | payload/TRF did not report the number of read events
[2026-05-15 00:01:31] 2026-05-15 04:00:54,635 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7139193489/memory_monitor_summary.json (trf name=prmon)
[2026-05-15 00:01:31] 2026-05-15 04:00:54,636 | INFO     | extracted standard info from prmon json
[2026-05-15 00:01:31] 2026-05-15 04:00:54,636 | INFO     | extracted standard memory fields from prmon json
[2026-05-15 00:01:31] 2026-05-15 04:00:54,640 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-15 00:01:31] 2026-05-15 04:00:54,640 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | WARNING  | wrong length of table data, x=[1778817486.0], y=[1412.0] (must be same and length>=4)
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | could have reported an average CPU frequency of 2600 MHz (4 samples)
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | ..............................
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . Timing measurements:
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . get job = 0 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . initial setup = 47 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . payload setup = 74 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . stage-in = 0 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | . payload execution = 61 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | . stage-out = 1 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | . log creation = 0 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | ..............................
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7139193489/pilotlog.txt
[2026-05-15 00:01:31] 2026-05-15 04:00:54,808 | WARNING  | 
[2026-05-15 00:01:31] [begin log extracts]
[2026-05-15 00:01:31] - Log from pilotlog.txt -
[2026-05-15 00:01:31] 2026-05-15 04:00:54,606 | INFO     | payload/TRF did not report the number of read events
[2026-05-15 00:01:31] 2026-05-15 04:00:54,635 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7139193489/memory_monitor_summary.json (trf name=prmon)
[2026-05-15 00:01:31] 2026-05-15 04:00:54,636 | INFO     | extracted standard info from prmon json
[2026-05-15 00:01:31] 2026-05-15 04:00:54,636 | INFO     | extracted standard memory fields from prmon json
[2026-05-15 00:01:31] 2026-05-15 04:00:54,640 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-15 00:01:31] 2026-05-15 04:00:54,640 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | WARNING  | wrong length of table data, x=[1778817486.0], y=[1412.0] (must be same and length>=4)
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | could have reported an average CPU frequency of 2600 MHz (4 samples)
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | ..............................
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . Timing measurements:
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . get job = 0 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . initial setup = 47 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . payload setup = 74 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,641 | INFO     | . stage-in = 0 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | . payload execution = 61 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | . stage-out = 1 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | . log creation = 0 s
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | ..............................
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-15 00:01:31] 2026-05-15 04:00:54,642 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7139193489/pilotlog.txt
[2026-05-15 00:01:31] [end log extracts]
[2026-05-15 00:01:31] 2026-05-15 04:00:54,809 | WARNING  | pilot_error_code(s) = [1305] (will report primary/first error code)
[2026-05-15 00:01:31] 2026-05-15 04:00:54,810 | WARNING  | pilot_error_diag(s) = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero retu
[2026-05-15 00:01:31] 2026-05-15 04:00:55,168 | INFO     | 
[2026-05-15 00:01:31] 2026-05-15 04:00:55,169 | INFO     | job summary report
[2026-05-15 00:01:31] 2026-05-15 04:00:55,169 | INFO     | --------------------------------------------------
[2026-05-15 00:01:31] 2026-05-15 04:00:55,169 | INFO     | PanDA job id: 7139193489
[2026-05-15 00:01:31] 2026-05-15 04:00:55,169 | INFO     | task id: 50250192
[2026-05-15 00:01:31] 2026-05-15 04:00:55,169 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-05-15 03:58:45,858 CRITICAL Transform executor raised TransformValidationExceptio
[2026-05-15 00:01:31] 2026-05-15 04:00:55,169 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-15 00:01:31] 2026-05-15 04:00:55,170 | INFO     | pilot state: failed 
[2026-05-15 00:01:31] 2026-05-15 04:00:55,170 | INFO     | transexitcode: 65
[2026-05-15 00:01:31] 2026-05-15 04:00:55,170 | INFO     | exeerrorcode: 65
[2026-05-15 00:01:31] 2026-05-15 04:00:55,170 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-05-15 00:01:31] 2026-05-15 04:00:55,170 | INFO     | exitcode: 65
[2026-05-15 00:01:31] 2026-05-15 04:00:55,170 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-05-15 00:01:31] 2026-05-15 04:00:55,170 | INFO     | cpuconsumptiontime: 28 s
[2026-05-15 00:01:31] 2026-05-15 04:00:55,170 | INFO     | nevents: 0
[2026-05-15 00:01:31] 2026-05-15 04:00:55,170 | INFO     | neventsw: 0
[2026-05-15 00:01:31] 2026-05-15 04:00:55,170 | INFO     | pid: 4090462
[2026-05-15 00:01:31] 2026-05-15 04:00:55,171 | INFO     | pgrp: 4090462
[2026-05-15 00:01:31] 2026-05-15 04:00:55,171 | INFO     | corecount: 12
[2026-05-15 00:01:31] 2026-05-15 04:00:55,171 | INFO     | event service: False
[2026-05-15 00:01:31] 2026-05-15 04:00:55,171 | INFO     | sizes: {0: 2265042, 1: 2265643, 2: 2266128, 3: 2266128, 4: 2267584, 15: 2267584, 140: 2291192, 141: 2291168, 143: 2295491, 145: 2295519, 261: 2295685}
[2026-05-15 00:01:31] 2026-05-15 04:00:55,171 | INFO     | --------------------------------------------------
[2026-05-15 00:01:31] 2026-05-15 04:00:55,171 | INFO     | 
[2026-05-15 00:01:31] 2026-05-15 04:00:55,171 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-05-15 00:01:31] 2026-05-15 04:00:55,434 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,435 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,435 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,435 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,435 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,436 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,436 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,436 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,436 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,436 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,437 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-15 00:01:31] 2026-05-15 04:00:55,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,437 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-15 00:01:31] 2026-05-15 04:00:55,437 | INFO     | job 7139193489 has completed (purged errors)
[2026-05-15 00:01:31] 2026-05-15 04:00:55,437 | INFO     | overall cleanup function is called
[2026-05-15 00:01:31] 2026-05-15 04:00:56,456 | INFO     | --- collectZombieJob: --- 10, [4090462]
[2026-05-15 00:01:31] 2026-05-15 04:00:56,457 | INFO     | zombie collector waiting for pid 4090462
[2026-05-15 00:01:31] 2026-05-15 04:00:56,457 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-15 00:01:31] 2026-05-15 04:00:56,457 | INFO     | collected zombie processes
[2026-05-15 00:01:31] 2026-05-15 04:00:56,457 | INFO     | will attempt to kill all subprocesses of pid=4090462
[2026-05-15 00:01:31] 2026-05-15 04:00:56,607 | INFO     | PID=4082380 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-15 00:01:31] 2026-05-15 04:00:56,607 | INFO     | .. there are 6 such processes running
[2026-05-15 00:01:31] 2026-05-15 04:00:57,081 | INFO     | process IDs to be killed: [4090462] (in reverse order)
[2026-05-15 00:01:31] 2026-05-15 04:00:57,243 | WARNING  | found no corresponding commands to process id(s)
[2026-05-15 00:01:31] 2026-05-15 04:00:57,244 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-15 00:01:31] 2026-05-15 04:00:57,268 | INFO     | did not find any defunct processes belonging to 4090462
[2026-05-15 00:01:31] 2026-05-15 04:00:57,291 | INFO     | did not find any defunct processes belonging to 4090462
[2026-05-15 00:01:31] 2026-05-15 04:00:57,291 | INFO     | Ready for new job
[2026-05-15 00:01:31] 2026-05-15 04:00:57,305 | INFO     | ***************************************
[2026-05-15 00:01:31] 2026-05-15 04:00:57,309 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-15 00:01:31] 2026-05-15 04:00:57,309 | INFO     | ***************************************
[2026-05-15 00:01:31] 2026-05-15 04:00:57,309 | INFO     | 
[2026-05-15 00:01:31] 2026-05-15 04:00:57,311 | INFO     | architecture information:
[2026-05-15 00:01:31] 2026-05-15 04:00:57,331 | INFO     | executing command: cat /etc/os-release
[2026-05-15 00:01:31] 2026-05-15 04:00:57,456 | INFO     | cat /etc/os-release:
[2026-05-15 00:01:31] NAME="CentOS Linux"
[2026-05-15 00:01:31] VERSION="7 (Core)"
[2026-05-15 00:01:31] ID="centos"
[2026-05-15 00:01:31] ID_LIKE="rhel fedora"
[2026-05-15 00:01:31] VERSION_ID="7"
[2026-05-15 00:01:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-15 00:01:31] ANSI_COLOR="0;31"
[2026-05-15 00:01:31] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-15 00:01:31] HOME_URL="https://www.centos.org/"
[2026-05-15 00:01:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-15 00:01:31] 
[2026-05-15 00:01:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-15 00:01:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-15 00:01:31] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-15 00:01:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-15 00:01:31] 
[2026-05-15 00:01:31] 2026-05-15 04:00:57,456 | INFO     | ***************************************
[2026-05-15 00:01:31] 2026-05-15 04:00:57,960 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-05-15 00:01:31] 2026-05-15 04:00:57,979 | INFO     | sufficient remaining disk space (54220816384 B)
[2026-05-15 00:01:31] 2026-05-15 04:00:57,979 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-15 00:01:31] 2026-05-15 04:00:57,979 | INFO     | current server update state: UPDATING_FINAL
[2026-05-15 00:01:31] 2026-05-15 04:00:57,980 | INFO     | update_server=False
[2026-05-15 00:01:31] 2026-05-15 04:00:57,980 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-15 00:01:31] 2026-05-15 04:00:57,980 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-15 00:01:31] 2026-05-15 04:00:57,990 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-15 00:01:31] 2026-05-15 04:00:58,069 | INFO     | all data control threads have been joined
[2026-05-15 00:01:31] 2026-05-15 04:00:58,234 | INFO     | all payload control threads have been joined
[2026-05-15 00:01:31] 2026-05-15 04:00:58,872 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-15 00:01:31] 2026-05-15 04:00:58,872 | INFO     | aborting loop
[2026-05-15 00:01:31] 2026-05-15 04:00:58,985 | INFO     | [job] retrieve thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:00:59,019 | INFO     | all job control threads have been joined
[2026-05-15 00:01:31] 2026-05-15 04:00:59,075 | INFO     | [data] control thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:00:59,116 | INFO     | [data] copytool_in thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:00:59,240 | INFO     | [payload] control thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:00:59,244 | INFO     | [job] create_data_payload thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:00:59,368 | INFO     | [payload] validate_post thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:00:59,742 | INFO     | [job] validate thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:00:59,816 | INFO     | [payload] validate_pre thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:00:59,841 | INFO     | [payload] failed_post thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:00:59,878 | INFO     | [job] job monitor thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:00:59,997 | INFO     | [data] copytool_out thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:01:00,026 | INFO     | [job] control thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:01:00,137 | INFO     | [payload] execute_payloads thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:01:00,183 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-15 00:01:31] 2026-05-15 04:01:00,389 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:01:01,189 | INFO     | [job] queue monitor thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:01:01,989 | INFO     | [data] queue_monitor thread has finished
[2026-05-15 00:01:31] 2026-05-15 04:01:18,424 | INFO     | [monitor] cgroup control has ended
[2026-05-15 00:01:31] 2026-05-15 04:01:20,026 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139651313989440)>', '<ExcThread(monitor, started 139650970666752)>']
[2026-05-15 00:01:31] 2026-05-15 04:01:25,052 | INFO     | all workflow threads have been joined
[2026-05-15 00:01:31] 2026-05-15 04:01:25,052 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-15 00:01:31] 2026-05-15 04:01:25,052 | INFO     | traces error code: 0
[2026-05-15 00:01:31] 2026-05-15 04:01:25,053 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-15 00:01:31] 2026-05-15 04:01:29,351 | INFO     | PID=4082380 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-15 00:01:31] 2026-05-15 04:01:29,352 | INFO     | .. there are 6 such processes running
[2026-05-15 00:01:31] 2026-05-15 04:01:29,352 | INFO     | found 0 job(s) in 20 queues
[2026-05-15 00:01:31] 2026-05-15 04:01:29,352 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-15 00:01:31] 2026-05-15 04:01:29,352 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-15 00:01:31] 2026-05-15 04:01:29,352 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-15 00:01:31] 2026-05-15 04:01:29,352 | INFO     | [monitor] control thread has ended
[2026-05-15 00:01:31] 2026-05-15 04:01:29,761 [wrapper] ==== pilot stdout END ====
[2026-05-15 00:01:31] 2026-05-15 04:01:29,778 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-15 00:01:31] 2026-05-15 04:01:29,798 [wrapper] pilotpid: 4082380
[2026-05-15 00:01:31] 2026-05-15 04:01:29,831 [wrapper] Pilot exit status: 0
[2026-05-15 00:01:31] 2026-05-15 04:01:29,963 [wrapper] pandaids: 7139193489
[2026-05-15 00:01:31] 2026-05-15 04:01:30,264 [wrapper] cleanup supervisor_pilot 4082386 4082381
[2026-05-15 00:01:31] 2026-05-15 04:01:30,307 [wrapper] Test setup, not cleaning
[2026-05-15 00:01:31] 2026-05-15 04:01:30,350 [wrapper] apfmon messages muted
[2026-05-15 00:01:31] 2026-05-15 04:01:30,374 [wrapper] ==== wrapper stdout END ====
[2026-05-15 00:01:31] 2026-05-15 04:01:30,397 [wrapper] ==== wrapper stderr END ====
[2026-05-15 00:01:31]  *** Error codes and diagnostics ***
[2026-05-15 00:01:31]     "exeErrorCode": 65,
[2026-05-15 00:01:31]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-05-15 00:01:31]     "pilotErrorCode": 1305,
[2026-05-15 00:01:31]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-05-15 00:01:31]  *** Listing of results directory ***
[2026-05-15 00:01:31] total 105888
[2026-05-15 00:01:31] -rwx------. 1 boincer umatlas     36281 May 14 16:19 runpilot2-wrapper.sh
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas      5631 May 14 23:08 queuedata.json
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas    683926 May 14 23:08 pilot3.tar.gz
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas       100 May 14 23:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-15 00:01:31] -rwxr-xr-x. 1 boincer umatlas      7986 May 14 23:53 run_atlas
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas       105 May 14 23:53 job.xml
[2026-05-15 00:01:31] -rw-r--r--. 2 boincer umatlas 104104896 May 14 23:53 EVNT.50238157._000211.pool.root.1
[2026-05-15 00:01:31] drwxrwx--x. 2 boincer umatlas      4096 May 14 23:53 shared
[2026-05-15 00:01:31] -rw-r--r--. 2 boincer umatlas    697448 May 14 23:53 input.tar.gz
[2026-05-15 00:01:31] -rw-r--r--. 2 boincer umatlas     15667 May 14 23:53 start_atlas.sh
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas         0 May 14 23:53 boinc_lockfile
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas      2559 May 14 23:53 pandaJob.out
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas        57 May 14 23:53 setup.sh.local
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas    993483 May 14 23:55 agis_schedconf.cvmfs.json
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas   1502367 May 14 23:55 agis_ddmendpoints.agis.ALL.json
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas      6570 May 14 23:55 init_data.xml
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas       434 May 14 23:56 workernode_map.json
[2026-05-15 00:01:31] drwx------. 5 boincer umatlas      4096 May 14 23:56 pilot3
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas       482 May 14 23:58 boinc_task_state.xml
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas       971 May 14 23:58 memory_monitor_summary.json
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas     22201 May 14 23:58 log.50250192._026409.job.log.tgz.1
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas        95 May 15 00:00 pilot_heartbeat.json
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas      7096 May 15 00:00 heartbeat_new.json
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas      7058 May 15 00:00 heartbeat.json
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas       822 May 15 00:01 pilotlog.txt
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas     82764 May 15 00:01 log.50250192._026409.job.log.1
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas       188 May 15 00:01 output.list
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas      8192 May 15 00:01 boinc_mmap_file
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas        23 May 15 00:01 wrapper_checkpoint.txt
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas       410 May 15 00:01 runtime_log
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas    122880 May 15 00:01 result.tar.gz
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas      8808 May 15 00:01 runtime_log.err
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas       638 May 15 00:01 2e3e704c581f.diag
[2026-05-15 00:01:31] -rw-r--r--. 1 boincer umatlas     21983 May 15 00:01 stderr.txt
[2026-05-15 00:01:31] No HITS result produced
[2026-05-15 00:01:31]  *** Contents of shared directory: ***
[2026-05-15 00:01:31] total 102488
[2026-05-15 00:01:31] -rw-r--r--. 2 boincer umatlas 104104896 May 14 23:53 ATLAS.root_0
[2026-05-15 00:01:31] -rw-r--r--. 2 boincer umatlas    697448 May 14 23:53 input.tar.gz
[2026-05-15 00:01:31] -rw-r--r--. 2 boincer umatlas     15667 May 14 23:53 start_atlas.sh
[2026-05-15 00:01:31] -rw-------. 1 boincer umatlas    122880 May 15 00:01 result.tar.gz
00:01:33 (4077522): run_atlas exited; CPU time 41.711289
00:01:33 (4077522): called boinc_finish(0)

</stderr_txt>
]]>

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