Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
17:40:48 (14556): wrapper (7.7.26015): starting
17:40:48 (14556): wrapper: running run_atlas (--nthreads 8)
[2026-05-14 17:40:48] Arguments: --nthreads 8
[2026-05-14 17:40:48] Threads: 8
[2026-05-14 17:40:48] Checking for CVMFS
[2026-05-14 17:40:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-14 17:40:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-14 17:40:51] Running cvmfs_config stat atlas.cern.ch
[2026-05-14 17:40:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-14 17:40:53] 2.11.2.0 30233 41692 102980 159515 0 192 17075572 25165825 967 130560 0 25472893 99.962 7436074 8354 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-14 17:40:53] CVMFS is ok
[2026-05-14 17:40:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-14 17:40:53] Checking for apptainer binary...
[2026-05-14 17:40:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-14 17:40:53] Running /usr/bin/apptainer --version
[2026-05-14 17:40:53] apptainer version 1.3.2-1.el7
[2026-05-14 17:40:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-14 17:40:58] cg-vwn486.simple-grid.lan
[2026-05-14 17:40:58] apptainer works
[2026-05-14 17:40:58] Set ATHENA_PROC_NUMBER=8
[2026-05-14 17:40:58] Set ATHENA_CORE_NUMBER=8
[2026-05-14 17:40:58] Starting ATLAS job with PandaID=7139107223
[2026-05-14 17:40:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/17 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-14 18:03:42]  *** The last 200 lines of the pilot log: ***
[2026-05-14 18:03:42] 2026-05-14 16:03:03,889 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-14 18:03:42] 2026-05-14 16:03:03,890 | WARNING  | wrong length of table data, x=[1778774297.0], y=[328131.0] (must be same and length>=4)
[2026-05-14 18:03:42] 2026-05-14 16:03:03,890 | INFO     | could have reported an average CPU frequency of 2249 MHz (4 samples)
[2026-05-14 18:03:42] 2026-05-14 16:03:03,890 | INFO     | ..............................
[2026-05-14 18:03:42] 2026-05-14 16:03:03,890 | INFO     | . Timing measurements:
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . get job = 0 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . initial setup = 119 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . payload setup = 227 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . stage-in = 0 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . payload execution = 598 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . stage-out = 1 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . log creation = 1 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | ..............................
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-14 18:03:42] 2026-05-14 16:03:03,892 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/17/PanDA_Pilot-7139107223/pilotlog.txt
[2026-05-14 18:03:42] 2026-05-14 16:03:04,279 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-05-14 18:03:42] - Log from pilotlog.txt -
[2026-05-14 18:03:42] 2026-05-14 16:03:03,886 | INFO     | payload/TRF did not report the number of read events
[2026-05-14 18:03:42] 2026-05-14 16:03:03,888 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-7139107223/memory_monitor_summary.json (trf name=prmon)
[2026-05-14 18:03:42] 2026-05-14 16:03:03,889 | INFO     | extracted standard info from prmon json
[2026-05-14 18:03:42] 2026-05-14 16:03:03,889 | INFO     | extracted standard memory fields from prmon json
[2026-05-14 18:03:42] 2026-05-14 16:03:03,889 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-14 18:03:42] 2026-05-14 16:03:03,889 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-14 18:03:42] 2026-05-14 16:03:03,890 | WARNING  | wrong length of table data, x=[1778774297.0], y=[328131.0] (must be same and length>=4)
[2026-05-14 18:03:42] 2026-05-14 16:03:03,890 | INFO     | could have reported an average CPU frequency of 2249 MHz (4 samples)
[2026-05-14 18:03:42] 2026-05-14 16:03:03,890 | INFO     | ..............................
[2026-05-14 18:03:42] 2026-05-14 16:03:03,890 | INFO     | . Timing measurements:
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . get job = 0 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . initial setup = 119 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . payload setup = 227 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . stage-in = 0 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . payload execution = 598 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . stage-out = 1 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . log creation = 1 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | ..............................
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-14 18:03:42] 2026-05-14 16:03:03,892 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/17/PanDA_Pilot-7139107223/pilotlog.txt
[2026-05-14 18:03:42] 2026-05-14 16:03:04,279 | WARNING  | 
[2026-05-14 18:03:42] [begin log extracts]
[2026-05-14 18:03:42] - Log from pilotlog.txt -
[2026-05-14 18:03:42] 2026-05-14 16:03:03,886 | INFO     | payload/TRF did not report the number of read events
[2026-05-14 18:03:42] 2026-05-14 16:03:03,888 | INFO     | using path: /var/lib/boinc/slots/17/PanDA_Pilot-7139107223/memory_monitor_summary.json (trf name=prmon)
[2026-05-14 18:03:42] 2026-05-14 16:03:03,889 | INFO     | extracted standard info from prmon json
[2026-05-14 18:03:42] 2026-05-14 16:03:03,889 | INFO     | extracted standard memory fields from prmon json
[2026-05-14 18:03:42] 2026-05-14 16:03:03,889 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-14 18:03:42] 2026-05-14 16:03:03,889 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-14 18:03:42] 2026-05-14 16:03:03,890 | WARNING  | wrong length of table data, x=[1778774297.0], y=[328131.0] (must be same and length>=4)
[2026-05-14 18:03:42] 2026-05-14 16:03:03,890 | INFO     | could have reported an average CPU frequency of 2249 MHz (4 samples)
[2026-05-14 18:03:42] 2026-05-14 16:03:03,890 | INFO     | ..............................
[2026-05-14 18:03:42] 2026-05-14 16:03:03,890 | INFO     | . Timing measurements:
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . get job = 0 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . initial setup = 119 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . payload setup = 227 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . stage-in = 0 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . payload execution = 598 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . stage-out = 1 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | . log creation = 1 s
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | ..............................
[2026-05-14 18:03:42] 2026-05-14 16:03:03,891 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-14 18:03:42] 2026-05-14 16:03:03,892 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/17/PanDA_Pilot-7139107223/pilotlog.txt
[2026-05-14 18:03:42] [end log extracts]
[2026-05-14 18:03:42] 2026-05-14 16:03:04,280 | WARNING  | pilot_error_code(s) = [1305] (will report primary/first error code)
[2026-05-14 18:03:42] 2026-05-14 16:03:04,280 | WARNING  | pilot_error_diag(s) = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero retu
[2026-05-14 18:03:42] 2026-05-14 16:03:04,404 | INFO     | 
[2026-05-14 18:03:42] 2026-05-14 16:03:04,405 | INFO     | job summary report
[2026-05-14 18:03:42] 2026-05-14 16:03:04,405 | INFO     | --------------------------------------------------
[2026-05-14 18:03:42] 2026-05-14 16:03:04,405 | INFO     | PanDA job id: 7139107223
[2026-05-14 18:03:42] 2026-05-14 16:03:04,405 | INFO     | task id: 50250192
[2026-05-14 18:03:42] 2026-05-14 16:03:04,405 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-05-14 16:00:23,271 CRITICAL Transform executor raised TransformValidationExceptio
[2026-05-14 18:03:42] 2026-05-14 16:03:04,405 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-14 18:03:42] 2026-05-14 16:03:04,405 | INFO     | pilot state: failed 
[2026-05-14 18:03:42] 2026-05-14 16:03:04,405 | INFO     | transexitcode: 65
[2026-05-14 18:03:42] 2026-05-14 16:03:04,405 | INFO     | exeerrorcode: 65
[2026-05-14 18:03:42] 2026-05-14 16:03:04,405 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-05-14 18:03:42] 2026-05-14 16:03:04,406 | INFO     | exitcode: 65
[2026-05-14 18:03:42] 2026-05-14 16:03:04,406 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-05-14 18:03:42] 2026-05-14 16:03:04,406 | INFO     | cpuconsumptiontime: 32 s
[2026-05-14 18:03:42] 2026-05-14 16:03:04,406 | INFO     | nevents: 0
[2026-05-14 18:03:42] 2026-05-14 16:03:04,406 | INFO     | neventsw: 0
[2026-05-14 18:03:42] 2026-05-14 16:03:04,406 | INFO     | pid: 22979
[2026-05-14 18:03:42] 2026-05-14 16:03:04,406 | INFO     | pgrp: 22979
[2026-05-14 18:03:42] 2026-05-14 16:03:04,406 | INFO     | corecount: 8
[2026-05-14 18:03:42] 2026-05-14 16:03:04,406 | INFO     | event service: False
[2026-05-14 18:03:42] 2026-05-14 16:03:04,406 | INFO     | sizes: {0: 2265698, 1: 2267527, 2: 2267527, 831: 2291322, 833: 2295674, 951: 2295812}
[2026-05-14 18:03:42] 2026-05-14 16:03:04,406 | INFO     | --------------------------------------------------
[2026-05-14 18:03:42] 2026-05-14 16:03:04,406 | INFO     | 
[2026-05-14 18:03:42] 2026-05-14 16:03:04,407 | INFO     | executing command: ls -lF /var/lib/boinc/slots/17
[2026-05-14 18:03:42] 2026-05-14 16:03:05,011 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,011 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,011 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,011 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,011 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,012 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,012 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,012 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,012 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,012 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,012 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,012 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,012 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,012 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,013 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,013 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,013 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,013 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-14 18:03:42] 2026-05-14 16:03:05,013 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,013 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-14 18:03:42] 2026-05-14 16:03:05,013 | INFO     | job 7139107223 has completed (purged errors)
[2026-05-14 18:03:42] 2026-05-14 16:03:05,013 | INFO     | overall cleanup function is called
[2026-05-14 18:03:42] 2026-05-14 16:03:05,462 | INFO     | PID=18526 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-14 18:03:42] 2026-05-14 16:03:05,462 | INFO     | .. there are 2 such processes running
[2026-05-14 18:03:42] 2026-05-14 16:03:06,020 | INFO     | --- collectZombieJob: --- 10, [22979]
[2026-05-14 18:03:42] 2026-05-14 16:03:06,021 | INFO     | zombie collector waiting for pid 22979
[2026-05-14 18:03:42] 2026-05-14 16:03:06,021 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-14 18:03:42] 2026-05-14 16:03:06,021 | INFO     | collected zombie processes
[2026-05-14 18:03:42] 2026-05-14 16:03:06,021 | INFO     | will attempt to kill all subprocesses of pid=22979
[2026-05-14 18:03:42] 2026-05-14 16:03:06,079 | INFO     | process IDs to be killed: [22979] (in reverse order)
[2026-05-14 18:03:42] 2026-05-14 16:03:07,300 | WARNING  | found no corresponding commands to process id(s)
[2026-05-14 18:03:42] 2026-05-14 16:03:07,300 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-14 18:03:42] 2026-05-14 16:03:07,302 | INFO     | did not find any defunct processes belonging to 22979
[2026-05-14 18:03:42] 2026-05-14 16:03:07,304 | INFO     | did not find any defunct processes belonging to 22979
[2026-05-14 18:03:42] 2026-05-14 16:03:07,304 | INFO     | Ready for new job
[2026-05-14 18:03:42] 2026-05-14 16:03:07,305 | INFO     | ***************************************
[2026-05-14 18:03:42] 2026-05-14 16:03:07,306 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-14 18:03:42] 2026-05-14 16:03:07,306 | INFO     | ***************************************
[2026-05-14 18:03:42] 2026-05-14 16:03:07,306 | INFO     | 
[2026-05-14 18:03:42] 2026-05-14 16:03:07,306 | INFO     | pilot is running in a VM
[2026-05-14 18:03:42] 2026-05-14 16:03:07,306 | INFO     | architecture information:
[2026-05-14 18:03:42] 2026-05-14 16:03:07,325 | INFO     | executing command: cat /etc/os-release
[2026-05-14 18:03:42] 2026-05-14 16:03:07,655 | INFO     | cat /etc/os-release:
[2026-05-14 18:03:42] NAME="CentOS Linux"
[2026-05-14 18:03:42] VERSION="7 (Core)"
[2026-05-14 18:03:42] ID="centos"
[2026-05-14 18:03:42] ID_LIKE="rhel fedora"
[2026-05-14 18:03:42] VERSION_ID="7"
[2026-05-14 18:03:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-14 18:03:42] ANSI_COLOR="0;31"
[2026-05-14 18:03:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-14 18:03:42] HOME_URL="https://www.centos.org/"
[2026-05-14 18:03:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-14 18:03:42] 
[2026-05-14 18:03:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-14 18:03:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-14 18:03:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-14 18:03:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-14 18:03:42] 
[2026-05-14 18:03:42] 2026-05-14 16:03:07,655 | INFO     | ***************************************
[2026-05-14 18:03:42] 2026-05-14 16:03:08,159 | INFO     | executing command: df -mP /var/lib/boinc/slots/17
[2026-05-14 18:03:42] 2026-05-14 16:03:08,434 | INFO     | sufficient remaining disk space (497331208192 B)
[2026-05-14 18:03:42] 2026-05-14 16:03:08,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-14 18:03:42] 2026-05-14 16:03:08,434 | INFO     | current server update state: UPDATING_FINAL
[2026-05-14 18:03:42] 2026-05-14 16:03:08,435 | INFO     | update_server=False
[2026-05-14 18:03:42] 2026-05-14 16:03:08,435 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-14 18:03:42] 2026-05-14 16:03:08,685 | INFO     | all data control threads have been joined
[2026-05-14 18:03:42] 2026-05-14 16:03:08,900 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-14 18:03:42] 2026-05-14 16:03:08,901 | INFO     | aborting loop
[2026-05-14 18:03:42] 2026-05-14 16:03:09,030 | INFO     | all payload control threads have been joined
[2026-05-14 18:03:42] 2026-05-14 16:03:09,425 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-14 18:03:42] 2026-05-14 16:03:09,441 | INFO     | [job] retrieve thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:09,501 | INFO     | [payload] validate_pre thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:09,669 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-14 18:03:42] 2026-05-14 16:03:09,691 | INFO     | [data] control thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:09,828 | INFO     | [payload] execute_payloads thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:09,868 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-14 18:03:42] 2026-05-14 16:03:09,905 | INFO     | [job] job monitor thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:09,935 | INFO     | [data] copytool_in thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:10,036 | INFO     | [payload] control thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:10,095 | INFO     | all job control threads have been joined
[2026-05-14 18:03:42] 2026-05-14 16:03:10,169 | INFO     | [payload] validate_post thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:10,397 | INFO     | [job] validate thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:10,431 | INFO     | [job] queue monitor thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:10,596 | INFO     | [payload] failed_post thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:10,636 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:10,785 | INFO     | [job] create_data_payload thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:10,925 | INFO     | [monitor] cgroup control has ended
[2026-05-14 18:03:42] 2026-05-14 16:03:11,101 | INFO     | [job] control thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:11,676 | INFO     | [data] copytool_out thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:13,877 | INFO     | [data] queue_monitor thread has finished
[2026-05-14 18:03:42] 2026-05-14 16:03:14,281 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033795053376)>', '<ExcThread(monitor, started 140033340188416)>']
[2026-05-14 18:03:42] 2026-05-14 16:03:19,307 | INFO     | all workflow threads have been joined
[2026-05-14 18:03:42] 2026-05-14 16:03:19,308 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-14 18:03:42] 2026-05-14 16:03:19,308 | INFO     | traces error code: 0
[2026-05-14 18:03:42] 2026-05-14 16:03:19,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-14 18:03:42] 2026-05-14 16:03:37,605 | INFO     | PID=18526 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-14 18:03:42] 2026-05-14 16:03:37,605 | INFO     | .. there are 2 such processes running
[2026-05-14 18:03:42] 2026-05-14 16:03:37,611 | INFO     | found 0 job(s) in 20 queues
[2026-05-14 18:03:42] 2026-05-14 16:03:37,612 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-14 18:03:42] 2026-05-14 16:03:37,612 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-14 18:03:42] 2026-05-14 16:03:37,612 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-14 18:03:42] 2026-05-14 16:03:37,612 | INFO     | [monitor] control thread has ended
[2026-05-14 18:03:42] 2026-05-14 16:03:37,800 [wrapper] ==== pilot stdout END ====
[2026-05-14 18:03:42] 2026-05-14 16:03:37,895 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-14 18:03:42] 2026-05-14 16:03:38,001 [wrapper] pilotpid: 18526
[2026-05-14 18:03:42] 2026-05-14 16:03:38,094 [wrapper] Pilot exit status: 0
[2026-05-14 18:03:42] 2026-05-14 16:03:38,596 [wrapper] pandaids: 7139107223
[2026-05-14 18:03:42] 2026-05-14 16:03:39,457 [wrapper] cleanup supervisor_pilot 27458 18527
[2026-05-14 18:03:42] 2026-05-14 16:03:39,533 [wrapper] Test setup, not cleaning
[2026-05-14 18:03:42] 2026-05-14 16:03:39,620 [wrapper] apfmon messages muted
[2026-05-14 18:03:42] 2026-05-14 16:03:39,714 [wrapper] ==== wrapper stdout END ====
[2026-05-14 18:03:42] 2026-05-14 16:03:39,797 [wrapper] ==== wrapper stderr END ====
[2026-05-14 18:03:42]  *** Error codes and diagnostics ***
[2026-05-14 18:03:42]     "exeErrorCode": 65,
[2026-05-14 18:03:42]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-05-14 18:03:42]     "pilotErrorCode": 1305,
[2026-05-14 18:03:42]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-05-14 18:03:42]  *** Listing of results directory ***
[2026-05-14 18:03:42] total 106452
[2026-05-14 18:03:42] -rwx------. 1 boinc boinc     36281 May 14 09:26 runpilot2-wrapper.sh
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc    683926 May 14 15:56 pilot3.tar.gz
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc      5631 May 14 16:11 queuedata.json
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc       100 May 14 17:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-14 18:03:42] -rwxr-xr-x. 1 boinc boinc      7986 May 14 17:40 run_atlas
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc       105 May 14 17:40 job.xml
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc      6306 May 14 17:40 init_data.xml
[2026-05-14 18:03:42] -rw-r--r--. 2 boinc boinc 104571316 May 14 17:40 EVNT.50238157._000084.pool.root.1
[2026-05-14 18:03:42] -rw-r--r--. 2 boinc boinc     15667 May 14 17:40 start_atlas.sh
[2026-05-14 18:03:42] drwxrwx--x. 2 boinc boinc        68 May 14 17:40 shared
[2026-05-14 18:03:42] -rw-r--r--. 2 boinc boinc    697446 May 14 17:40 input.tar.gz
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc         0 May 14 17:40 boinc_lockfile
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc      2558 May 14 17:40 pandaJob.out
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc   1502367 May 14 17:45 agis_ddmendpoints.agis.ALL.json
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc       415 May 14 17:47 workernode_map.json
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc    992747 May 14 17:47 agis_schedconf.cvmfs.json
[2026-05-14 18:03:42] drwx------. 5 boinc boinc      4096 May 14 17:47 pilot3
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc       483 May 14 18:00 boinc_task_state.xml
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc       974 May 14 18:00 memory_monitor_summary.json
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc     26823 May 14 18:01 log.50250192._024834.job.log.tgz.1
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc      7063 May 14 18:03 heartbeat_new.json
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc      7025 May 14 18:03 heartbeat.json
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc        24 May 14 18:03 wrapper_checkpoint.txt
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc      8192 May 14 18:03 boinc_mmap_file
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc        95 May 14 18:03 pilot_heartbeat.json
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc       820 May 14 18:03 pilotlog.txt
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc    141772 May 14 18:03 log.50250192._024834.job.log.1
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc       188 May 14 18:03 output.list
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc       410 May 14 18:03 runtime_log
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc    184320 May 14 18:03 result.tar.gz
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc      8302 May 14 18:03 runtime_log.err
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc       638 May 14 18:03 7920d248621c.diag
[2026-05-14 18:03:42] -rw-r--r--. 1 boinc boinc     21595 May 14 18:03 stderr.txt
[2026-05-14 18:03:42] No HITS result produced
[2026-05-14 18:03:42]  *** Contents of shared directory: ***
[2026-05-14 18:03:42] total 103004
[2026-05-14 18:03:42] -rw-r--r--. 2 boinc boinc 104571316 May 14 17:40 ATLAS.root_0
[2026-05-14 18:03:42] -rw-r--r--. 2 boinc boinc     15667 May 14 17:40 start_atlas.sh
[2026-05-14 18:03:42] -rw-r--r--. 2 boinc boinc    697446 May 14 17:40 input.tar.gz
[2026-05-14 18:03:42] -rw-------. 1 boinc boinc    184320 May 14 18:03 result.tar.gz
18:03:44 (14556): run_atlas exited; CPU time 48.552458
18:03:44 (14556): called boinc_finish(0)

</stderr_txt>
]]>

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