Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:36:36 (1694372): wrapper (7.7.26015): starting
07:36:36 (1694372): wrapper: running run_atlas (--nthreads 3)
[2026-05-14 07:36:36] Arguments: --nthreads 3
[2026-05-14 07:36:36] Threads: 3
[2026-05-14 07:36:36] Checking for CVMFS
[2026-05-14 07:36:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-14 07:36:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-14 07:36:36] Running cvmfs_config stat atlas.cern.ch
[2026-05-14 07:36:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-14 07:36:36] 2.9.2.0 1489746 55 63232 159510 0 186 35562795 36864000 0 130560 0 774544 99.998 4230 10023 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-05-14 07:36:36] CVMFS is ok
[2026-05-14 07:36:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-14 07:36:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-14 07:36:36] Further information can be found at the LHC@home message board.
[2026-05-14 07:36:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-14 07:36:36] Checking for apptainer binary...
[2026-05-14 07:36:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-14 07:36:36] Running /usr/bin/apptainer --version
[2026-05-14 07:36:36] apptainer version 1.4.1-1.1
[2026-05-14 07:36:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-14 07:36:37] magicA252
[2026-05-14 07:36:37] apptainer works
[2026-05-14 07:36:37] Set ATHENA_PROC_NUMBER=3
[2026-05-14 07:36:37] Set ATHENA_CORE_NUMBER=3
[2026-05-14 07:36:37] Starting ATLAS job with PandaID=7138673015
[2026-05-14 07:36:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-14 07:40:12]  *** The last 200 lines of the pilot log: ***
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | extracted standard memory fields from prmon json
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | WARNING  | found no stored workdir sizes
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | will not add max space = 0 B to job metrics
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | WARNING  | wrong length of table data, x=[1778737025.0], y=[11270.0] (must be same and length>=4)
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | could have reported an average CPU frequency of 3629 MHz (4 samples)
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | ..............................
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . Timing measurements:
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . get job = 0 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . initial setup = 3 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . payload setup = 5 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . stage-in = 0 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . payload execution = 37 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | . stage-out = 0 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | . log creation = 0 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | ..............................
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-7138673015/pilotlog.txt
[2026-05-14 07:40:12] 2026-05-14 05:39:40,285 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-05-14 07:40:12] - Log from pilotlog.txt -
[2026-05-14 07:40:12] 2026-05-14 05:39:40,270 | INFO     | extracted standard info from prmon json
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | extracted standard memory fields from prmon json
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | WARNING  | found no stored workdir sizes
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | will not add max space = 0 B to job metrics
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | WARNING  | wrong length of table data, x=[1778737025.0], y=[11270.0] (must be same and length>=4)
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | could have reported an average CPU frequency of 3629 MHz (4 samples)
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | ..............................
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . Timing measurements:
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . get job = 0 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . initial setup = 3 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . payload setup = 5 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . stage-in = 0 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . payload execution = 37 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | . stage-out = 0 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | . log creation = 0 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | ..............................
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-7138673015/pilotlog.txt
[2026-05-14 07:40:12] 2026-05-14 05:39:40,285 | WARNING  | 
[2026-05-14 07:40:12] [begin log extracts]
[2026-05-14 07:40:12] - Log from pilotlog.txt -
[2026-05-14 07:40:12] 2026-05-14 05:39:40,270 | INFO     | extracted standard info from prmon json
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | extracted standard memory fields from prmon json
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | WARNING  | found no stored workdir sizes
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | will not add max space = 0 B to job metrics
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | WARNING  | wrong length of table data, x=[1778737025.0], y=[11270.0] (must be same and length>=4)
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | could have reported an average CPU frequency of 3629 MHz (4 samples)
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | ..............................
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . Timing measurements:
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . get job = 0 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . initial setup = 3 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . payload setup = 5 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . stage-in = 0 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,271 | INFO     | . payload execution = 37 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | . stage-out = 0 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | . log creation = 0 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | ..............................
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-14 07:40:12] 2026-05-14 05:39:40,272 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-7138673015/pilotlog.txt
[2026-05-14 07:40:12] [end log extracts]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,285 | WARNING  | pilot_error_code(s) = [1305] (will report primary/first error code)
[2026-05-14 07:40:12] 2026-05-14 05:39:40,286 | WARNING  | pilot_error_diag(s) = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero retu
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | 
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | job summary report
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | --------------------------------------------------
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | PanDA job id: 7138673015
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | task id: 50250192
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-05-14 05:37:34,917 CRITICAL Transform executor raised TransformValidationExceptio
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | pilot state: failed 
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | transexitcode: 65
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | exeerrorcode: 65
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | exitcode: 65
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | cpuconsumptiontime: 10 s
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | nevents: 0
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | neventsw: 0
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | pid: 1702524
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | pgrp: 1702524
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | corecount: 3
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | event service: False
[2026-05-14 07:40:12] 2026-05-14 05:39:40,316 | INFO     | sizes: {0: 2267507, 11: 2267507, 45: 2290946, 46: 2295272, 164: 2295410}
[2026-05-14 07:40:12] 2026-05-14 05:39:40,317 | INFO     | --------------------------------------------------
[2026-05-14 07:40:12] 2026-05-14 05:39:40,317 | INFO     | 
[2026-05-14 07:40:12] 2026-05-14 05:39:40,317 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-05-14 07:40:12] 2026-05-14 05:39:40,330 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | job 7138673015 has completed (purged errors)
[2026-05-14 07:40:12] 2026-05-14 05:39:40,331 | INFO     | overall cleanup function is called
[2026-05-14 07:40:12] 2026-05-14 05:39:41,333 | INFO     | --- collectZombieJob: --- 10, [1702524]
[2026-05-14 07:40:12] 2026-05-14 05:39:41,334 | INFO     | zombie collector waiting for pid 1702524
[2026-05-14 07:40:12] 2026-05-14 05:39:41,334 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-14 07:40:12] 2026-05-14 05:39:41,334 | INFO     | collected zombie processes
[2026-05-14 07:40:12] 2026-05-14 05:39:41,334 | INFO     | will attempt to kill all subprocesses of pid=1702524
[2026-05-14 07:40:12] 2026-05-14 05:39:41,365 | INFO     | process IDs to be killed: [1702524] (in reverse order)
[2026-05-14 07:40:12] 2026-05-14 05:39:41,390 | WARNING  | found no corresponding commands to process id(s)
[2026-05-14 07:40:12] 2026-05-14 05:39:41,390 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-14 07:40:12] 2026-05-14 05:39:41,392 | INFO     | did not find any defunct processes belonging to 1702524
[2026-05-14 07:40:12] 2026-05-14 05:39:41,393 | INFO     | did not find any defunct processes belonging to 1702524
[2026-05-14 07:40:12] 2026-05-14 05:39:41,393 | INFO     | Ready for new job
[2026-05-14 07:40:12] 2026-05-14 05:39:41,393 | INFO     | ***************************************
[2026-05-14 07:40:12] 2026-05-14 05:39:41,393 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-14 07:40:12] 2026-05-14 05:39:41,393 | INFO     | ***************************************
[2026-05-14 07:40:12] 2026-05-14 05:39:41,393 | INFO     | 
[2026-05-14 07:40:12] 2026-05-14 05:39:41,394 | INFO     | architecture information:
[2026-05-14 07:40:12] 2026-05-14 05:39:41,394 | INFO     | executing command: cat /etc/os-release
[2026-05-14 07:40:12] 2026-05-14 05:39:41,403 | INFO     | cat /etc/os-release:
[2026-05-14 07:40:12] NAME="CentOS Linux"
[2026-05-14 07:40:12] VERSION="7 (Core)"
[2026-05-14 07:40:12] ID="centos"
[2026-05-14 07:40:12] ID_LIKE="rhel fedora"
[2026-05-14 07:40:12] VERSION_ID="7"
[2026-05-14 07:40:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-14 07:40:12] ANSI_COLOR="0;31"
[2026-05-14 07:40:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-14 07:40:12] HOME_URL="https://www.centos.org/"
[2026-05-14 07:40:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-14 07:40:12] 
[2026-05-14 07:40:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-14 07:40:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-14 07:40:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-14 07:40:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-14 07:40:12] 
[2026-05-14 07:40:12] 2026-05-14 05:39:41,403 | INFO     | ***************************************
[2026-05-14 07:40:12] 2026-05-14 05:39:41,906 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-05-14 07:40:12] 2026-05-14 05:39:41,919 | INFO     | sufficient remaining disk space (370754453504 B)
[2026-05-14 07:40:12] 2026-05-14 05:39:41,919 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-14 07:40:12] 2026-05-14 05:39:41,919 | INFO     | current server update state: UPDATING_FINAL
[2026-05-14 07:40:12] 2026-05-14 05:39:41,919 | INFO     | update_server=False
[2026-05-14 07:40:12] 2026-05-14 05:39:41,919 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-14 07:40:12] 2026-05-14 05:39:41,919 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-14 07:40:12] 2026-05-14 05:39:41,920 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-14 07:40:12] 2026-05-14 05:39:41,920 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-14 07:40:12] 2026-05-14 05:39:41,920 | INFO     | aborting loop
[2026-05-14 07:40:12] 2026-05-14 05:39:41,980 | INFO     | all payload control threads have been joined
[2026-05-14 07:40:12] 2026-05-14 05:39:42,426 | INFO     | all data control threads have been joined
[2026-05-14 07:40:12] 2026-05-14 05:39:42,921 | INFO     | [job] retrieve thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:42,925 | INFO     | [job] job monitor thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:42,925 | INFO     | [job] queue monitor thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:42,967 | INFO     | [job] create_data_payload thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:42,985 | INFO     | [payload] control thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:43,014 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-14 07:40:12] 2026-05-14 05:39:43,040 | INFO     | [payload] validate_pre thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:43,117 | INFO     | [data] copytool_in thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:43,345 | INFO     | all job control threads have been joined
[2026-05-14 07:40:12] 2026-05-14 05:39:43,432 | INFO     | [data] control thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:43,477 | INFO     | [payload] execute_payloads thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:43,545 | INFO     | [payload] failed_post thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:43,685 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:44,351 | INFO     | [job] control thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:44,367 | INFO     | [job] validate thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:44,464 | INFO     | [payload] validate_post thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:45,015 | INFO     | [data] copytool_out thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:45,745 | INFO     | [monitor] cgroup control has ended
[2026-05-14 07:40:12] 2026-05-14 05:39:45,926 | INFO     | [data] queue_monitor thread has finished
[2026-05-14 07:40:12] 2026-05-14 05:39:46,995 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140028810712896)>', '<ExcThread(monitor, started 140027879225088)>']
[2026-05-14 07:40:12] 2026-05-14 05:39:52,004 | INFO     | all workflow threads have been joined
[2026-05-14 07:40:12] 2026-05-14 05:39:52,004 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-14 07:40:12] 2026-05-14 05:39:52,004 | INFO     | traces error code: 0
[2026-05-14 07:40:12] 2026-05-14 05:39:52,004 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-14 07:40:12] 2026-05-14 05:40:12,345 | INFO     | PID=1698095 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-14 07:40:12] 2026-05-14 05:40:12,346 | INFO     | found 0 job(s) in 20 queues
[2026-05-14 07:40:12] 2026-05-14 05:40:12,346 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-14 07:40:12] 2026-05-14 05:40:12,346 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-14 07:40:12] 2026-05-14 05:40:12,346 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-14 07:40:12] 2026-05-14 05:40:12,346 | INFO     | [monitor] control thread has ended
[2026-05-14 07:40:12] 2026-05-14 05:40:12,392 [wrapper] ==== pilot stdout END ====
[2026-05-14 07:40:12] 2026-05-14 05:40:12,395 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-14 07:40:12] 2026-05-14 05:40:12,398 [wrapper] pilotpid: 1698095
[2026-05-14 07:40:12] 2026-05-14 05:40:12,400 [wrapper] Pilot exit status: 0
[2026-05-14 07:40:12] 2026-05-14 05:40:12,408 [wrapper] pandaids: 7138673015
[2026-05-14 07:40:12] 2026-05-14 05:40:12,424 [wrapper] cleanup supervisor_pilot 1698101 1698096
[2026-05-14 07:40:12] 2026-05-14 05:40:12,427 [wrapper] Test setup, not cleaning
[2026-05-14 07:40:12] 2026-05-14 05:40:12,429 [wrapper] apfmon messages muted
[2026-05-14 07:40:12] 2026-05-14 05:40:12,432 [wrapper] ==== wrapper stdout END ====
[2026-05-14 07:40:12] 2026-05-14 05:40:12,434 [wrapper] ==== wrapper stderr END ====
[2026-05-14 07:40:12]  *** Error codes and diagnostics ***
[2026-05-14 07:40:12]     "exeErrorCode": 65,
[2026-05-14 07:40:12]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-05-14 07:40:12]     "pilotErrorCode": 1305,
[2026-05-14 07:40:12]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-05-14 07:40:12]  *** Listing of results directory ***
[2026-05-14 07:40:12] total 106060
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc    683926 May 14 03:50 pilot3.tar.gz
[2026-05-14 07:40:12] -rwx------ 1 boinc boinc     36281 May 14 03:54 runpilot2-wrapper.sh
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc      5631 May 14 03:54 queuedata.json
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc       100 May 14 07:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-14 07:40:12] -rwxr-xr-x 1 boinc boinc      7986 May 14 07:36 run_atlas
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc       105 May 14 07:36 job.xml
[2026-05-14 07:40:12] -rw-r--r-- 2 boinc boinc 104298341 May 14 07:36 EVNT.50238157._000492.pool.root.1
[2026-05-14 07:40:12] -rw-r--r-- 2 boinc boinc    697445 May 14 07:36 input.tar.gz
[2026-05-14 07:40:12] -rw-r--r-- 2 boinc boinc     15667 May 14 07:36 start_atlas.sh
[2026-05-14 07:40:12] drwxrwx--x 2 boinc boinc      4096 May 14 07:36 shared
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc         0 May 14 07:36 boinc_setup_complete
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc      6362 May 14 07:36 init_data.xml
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc         0 May 14 07:36 boinc_lockfile
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc      2561 May 14 07:36 pandaJob.out
[2026-05-14 07:40:12] -rw------- 1 boinc boinc    993699 May 14 07:36 agis_schedconf.cvmfs.json
[2026-05-14 07:40:12] -rw------- 1 boinc boinc   1502367 May 14 07:36 agis_ddmendpoints.agis.ALL.json
[2026-05-14 07:40:12] -rw------- 1 boinc boinc       426 May 14 07:36 workernode_map.json
[2026-05-14 07:40:12] drwx------ 5 boinc boinc      4096 May 14 07:36 pilot3
[2026-05-14 07:40:12] -rw------- 1 boinc boinc       969 May 14 07:37 memory_monitor_summary.json
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc       480 May 14 07:37 boinc_task_state.xml
[2026-05-14 07:40:12] -rw------- 1 boinc boinc     20854 May 14 07:37 log.50250192._021357.job.log.tgz.1
[2026-05-14 07:40:12] -rw------- 1 boinc boinc      7030 May 14 07:39 heartbeat_new.json
[2026-05-14 07:40:12] -rw------- 1 boinc boinc      6992 May 14 07:39 heartbeat.json
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc      8192 May 14 07:39 boinc_mmap_file
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc        22 May 14 07:39 wrapper_checkpoint.txt
[2026-05-14 07:40:12] -rw------- 1 boinc boinc       747 May 14 07:40 pilotlog.txt
[2026-05-14 07:40:12] -rw------- 1 boinc boinc        95 May 14 07:40 pilot_heartbeat.json
[2026-05-14 07:40:12] -rw------- 1 boinc boinc     75380 May 14 07:40 log.50250192._021357.job.log.1
[2026-05-14 07:40:12] -rw------- 1 boinc boinc       188 May 14 07:40 output.list
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc       410 May 14 07:40 runtime_log
[2026-05-14 07:40:12] -rw------- 1 boinc boinc    112640 May 14 07:40 result.tar.gz
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc      8381 May 14 07:40 runtime_log.err
[2026-05-14 07:40:12] -rw------- 1 boinc boinc       650 May 14 07:40 2b5884079314.diag
[2026-05-14 07:40:12] -rw-r--r-- 1 boinc boinc     21603 May 14 07:40 stderr.txt
[2026-05-14 07:40:12] No HITS result produced
[2026-05-14 07:40:12]  *** Contents of shared directory: ***
[2026-05-14 07:40:12] total 102672
[2026-05-14 07:40:12] -rw-r--r-- 2 boinc boinc 104298341 May 14 07:36 ATLAS.root_0
[2026-05-14 07:40:12] -rw-r--r-- 2 boinc boinc    697445 May 14 07:36 input.tar.gz
[2026-05-14 07:40:12] -rw-r--r-- 2 boinc boinc     15667 May 14 07:36 start_atlas.sh
[2026-05-14 07:40:12] -rw------- 1 boinc boinc    112640 May 14 07:40 result.tar.gz
07:40:13 (1694372): run_atlas exited; CPU time 9.723331
07:40:13 (1694372): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN