Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
02:28:43 (603677): wrapper (7.7.26015): starting
02:28:43 (603677): wrapper: running run_atlas (--nthreads 8)
[2026-05-14 02:28:43] Arguments: --nthreads 8
[2026-05-14 02:28:43] Threads: 8
[2026-05-14 02:28:43] Checking for CVMFS
[2026-05-14 02:28:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-14 02:28:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-14 02:28:43] Running cvmfs_config stat atlas.cern.ch
[2026-05-14 02:28:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-14 02:28:43] 2.13.3.0 17243 19713 337632 159512 1 506 22852071 32935937 16649 16776704 0 144480319 99.694 122602726 30378 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-05-14 02:28:43] CVMFS is ok
[2026-05-14 02:28:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-14 02:28:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-14 02:28:44] Further information can be found at the LHC@home message board.
[2026-05-14 02:28:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-14 02:28:44] Checking for apptainer binary...
[2026-05-14 02:28:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-14 02:28:44] Running /usr/bin/apptainer --version
[2026-05-14 02:28:44] apptainer version 1.4.5-3.el9
[2026-05-14 02:28:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-14 02:28:44] c6-12-29-2.aglt2.org
[2026-05-14 02:28:44] apptainer works
[2026-05-14 02:28:44] Set ATHENA_PROC_NUMBER=8
[2026-05-14 02:28:44] Set ATHENA_CORE_NUMBER=8
[2026-05-14 02:28:44] Starting ATLAS job with PandaID=7138263752
[2026-05-14 02:28:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-14 02:33:11]  *** The last 200 lines of the pilot log: ***
[2026-05-14 02:33:11] 2026-05-14 06:32:08,624 | WARNING  | found no stored workdir sizes
[2026-05-14 02:33:11] 2026-05-14 06:32:08,624 | INFO     | will not add max space = 0 B to job metrics
[2026-05-14 02:33:11] 2026-05-14 06:32:08,624 | WARNING  | wrong length of table data, x=[1778740176.0], y=[640.0] (must be same and length>=4)
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | could have reported an average CPU frequency of 2596 MHz (4 samples)
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | ..............................
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . Timing measurements:
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . get job = 0 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . initial setup = 8 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . payload setup = 12 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . stage-in = 0 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . payload execution = 32 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | . stage-out = 0 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | . log creation = 0 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | ..............................
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/3/PanDA_Pilot-7138263752/pilotlog.txt
[2026-05-14 02:33:11] 2026-05-14 06:32:08,652 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-05-14 02:33:11] - Log from pilotlog.txt -
[2026-05-14 02:33:11] 2026-05-14 06:32:08,622 | INFO     | extracted standard info from prmon json
[2026-05-14 02:33:11] 2026-05-14 06:32:08,623 | INFO     | extracted standard memory fields from prmon json
[2026-05-14 02:33:11] 2026-05-14 06:32:08,623 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-14 02:33:11] 2026-05-14 06:32:08,623 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-14 02:33:11] 2026-05-14 06:32:08,624 | WARNING  | found no stored workdir sizes
[2026-05-14 02:33:11] 2026-05-14 06:32:08,624 | INFO     | will not add max space = 0 B to job metrics
[2026-05-14 02:33:11] 2026-05-14 06:32:08,624 | WARNING  | wrong length of table data, x=[1778740176.0], y=[640.0] (must be same and length>=4)
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | could have reported an average CPU frequency of 2596 MHz (4 samples)
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | ..............................
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . Timing measurements:
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . get job = 0 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . initial setup = 8 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . payload setup = 12 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . stage-in = 0 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . payload execution = 32 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | . stage-out = 0 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | . log creation = 0 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | ..............................
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/3/PanDA_Pilot-7138263752/pilotlog.txt
[2026-05-14 02:33:11] 2026-05-14 06:32:08,652 | WARNING  | 
[2026-05-14 02:33:11] [begin log extracts]
[2026-05-14 02:33:11] - Log from pilotlog.txt -
[2026-05-14 02:33:11] 2026-05-14 06:32:08,622 | INFO     | extracted standard info from prmon json
[2026-05-14 02:33:11] 2026-05-14 06:32:08,623 | INFO     | extracted standard memory fields from prmon json
[2026-05-14 02:33:11] 2026-05-14 06:32:08,623 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-14 02:33:11] 2026-05-14 06:32:08,623 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-14 02:33:11] 2026-05-14 06:32:08,624 | WARNING  | found no stored workdir sizes
[2026-05-14 02:33:11] 2026-05-14 06:32:08,624 | INFO     | will not add max space = 0 B to job metrics
[2026-05-14 02:33:11] 2026-05-14 06:32:08,624 | WARNING  | wrong length of table data, x=[1778740176.0], y=[640.0] (must be same and length>=4)
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | could have reported an average CPU frequency of 2596 MHz (4 samples)
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | ..............................
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . Timing measurements:
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . get job = 0 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . initial setup = 8 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . payload setup = 12 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . stage-in = 0 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,625 | INFO     | . payload execution = 32 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | . stage-out = 0 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | . log creation = 0 s
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | ..............................
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-14 02:33:11] 2026-05-14 06:32:08,626 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/3/PanDA_Pilot-7138263752/pilotlog.txt
[2026-05-14 02:33:11] [end log extracts]
[2026-05-14 02:33:11] 2026-05-14 06:32:08,652 | WARNING  | pilot_error_code(s) = [1305] (will report primary/first error code)
[2026-05-14 02:33:11] 2026-05-14 06:32:08,654 | WARNING  | pilot_error_diag(s) = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero retu
[2026-05-14 02:33:11] 2026-05-14 06:32:09,284 | INFO     | 
[2026-05-14 02:33:11] 2026-05-14 06:32:09,284 | INFO     | job summary report
[2026-05-14 02:33:11] 2026-05-14 06:32:09,284 | INFO     | --------------------------------------------------
[2026-05-14 02:33:11] 2026-05-14 06:32:09,284 | INFO     | PanDA job id: 7138263752
[2026-05-14 02:33:11] 2026-05-14 06:32:09,284 | INFO     | task id: 50250204
[2026-05-14 02:33:11] 2026-05-14 06:32:09,284 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-05-14 06:29:57,318 CRITICAL Transform executor raised TransformValidationExceptio
[2026-05-14 02:33:11] 2026-05-14 06:32:09,285 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-14 02:33:11] 2026-05-14 06:32:09,285 | INFO     | pilot state: failed 
[2026-05-14 02:33:11] 2026-05-14 06:32:09,285 | INFO     | transexitcode: 65
[2026-05-14 02:33:11] 2026-05-14 06:32:09,285 | INFO     | exeerrorcode: 65
[2026-05-14 02:33:11] 2026-05-14 06:32:09,285 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-05-14 02:33:11] 2026-05-14 06:32:09,285 | INFO     | exitcode: 65
[2026-05-14 02:33:11] 2026-05-14 06:32:09,285 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-05-14 02:33:11] 2026-05-14 06:32:09,285 | INFO     | cpuconsumptiontime: 29 s
[2026-05-14 02:33:11] 2026-05-14 06:32:09,285 | INFO     | nevents: 0
[2026-05-14 02:33:11] 2026-05-14 06:32:09,285 | INFO     | neventsw: 0
[2026-05-14 02:33:11] 2026-05-14 06:32:09,285 | INFO     | pid: 629561
[2026-05-14 02:33:11] 2026-05-14 06:32:09,286 | INFO     | pgrp: 629561
[2026-05-14 02:33:11] 2026-05-14 06:32:09,286 | INFO     | corecount: 8
[2026-05-14 02:33:11] 2026-05-14 06:32:09,286 | INFO     | event service: False
[2026-05-14 02:33:11] 2026-05-14 06:32:09,286 | INFO     | sizes: {0: 2265697, 1: 2267526, 12: 2267526, 48: 2290847, 50: 2295142, 53: 2295170, 171: 2295464}
[2026-05-14 02:33:11] 2026-05-14 06:32:09,286 | INFO     | --------------------------------------------------
[2026-05-14 02:33:11] 2026-05-14 06:32:09,286 | INFO     | 
[2026-05-14 02:33:11] 2026-05-14 06:32:09,286 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-05-14 02:33:11] 2026-05-14 06:32:09,367 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,367 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,367 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,367 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,367 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,368 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-14 02:33:11] 2026-05-14 06:32:09,369 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,369 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-14 02:33:11] 2026-05-14 06:32:09,369 | INFO     | job 7138263752 has completed (purged errors)
[2026-05-14 02:33:11] 2026-05-14 06:32:09,369 | INFO     | overall cleanup function is called
[2026-05-14 02:33:11] 2026-05-14 06:32:10,377 | INFO     | --- collectZombieJob: --- 10, [629561]
[2026-05-14 02:33:11] 2026-05-14 06:32:10,377 | INFO     | zombie collector waiting for pid 629561
[2026-05-14 02:33:11] 2026-05-14 06:32:10,378 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-14 02:33:11] 2026-05-14 06:32:10,378 | INFO     | collected zombie processes
[2026-05-14 02:33:11] 2026-05-14 06:32:10,378 | INFO     | will attempt to kill all subprocesses of pid=629561
[2026-05-14 02:33:11] 2026-05-14 06:32:10,763 | INFO     | process IDs to be killed: [629561] (in reverse order)
[2026-05-14 02:33:11] 2026-05-14 06:32:10,912 | WARNING  | found no corresponding commands to process id(s)
[2026-05-14 02:33:11] 2026-05-14 06:32:10,912 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-14 02:33:11] 2026-05-14 06:32:10,931 | INFO     | did not find any defunct processes belonging to 629561
[2026-05-14 02:33:11] 2026-05-14 06:32:10,952 | INFO     | did not find any defunct processes belonging to 629561
[2026-05-14 02:33:11] 2026-05-14 06:32:10,952 | INFO     | Ready for new job
[2026-05-14 02:33:11] 2026-05-14 06:32:10,954 | INFO     | ***************************************
[2026-05-14 02:33:11] 2026-05-14 06:32:10,954 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-14 02:33:11] 2026-05-14 06:32:10,954 | INFO     | ***************************************
[2026-05-14 02:33:11] 2026-05-14 06:32:10,954 | INFO     | 
[2026-05-14 02:33:11] 2026-05-14 06:32:10,960 | INFO     | architecture information:
[2026-05-14 02:33:11] 2026-05-14 06:32:10,961 | INFO     | executing command: cat /etc/os-release
[2026-05-14 02:33:11] 2026-05-14 06:32:10,980 | INFO     | cat /etc/os-release:
[2026-05-14 02:33:11] NAME="CentOS Linux"
[2026-05-14 02:33:11] VERSION="7 (Core)"
[2026-05-14 02:33:11] ID="centos"
[2026-05-14 02:33:11] ID_LIKE="rhel fedora"
[2026-05-14 02:33:11] VERSION_ID="7"
[2026-05-14 02:33:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-14 02:33:11] ANSI_COLOR="0;31"
[2026-05-14 02:33:11] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-14 02:33:11] HOME_URL="https://www.centos.org/"
[2026-05-14 02:33:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-14 02:33:11] 
[2026-05-14 02:33:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-14 02:33:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-14 02:33:11] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-14 02:33:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-14 02:33:11] 
[2026-05-14 02:33:11] 2026-05-14 06:32:10,981 | INFO     | ***************************************
[2026-05-14 02:33:11] 2026-05-14 06:32:11,485 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-05-14 02:33:11] 2026-05-14 06:32:11,528 | INFO     | sufficient remaining disk space (94236573696 B)
[2026-05-14 02:33:11] 2026-05-14 06:32:11,529 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-14 02:33:11] 2026-05-14 06:32:11,529 | INFO     | current server update state: UPDATING_FINAL
[2026-05-14 02:33:11] 2026-05-14 06:32:11,529 | INFO     | update_server=False
[2026-05-14 02:33:11] 2026-05-14 06:32:11,529 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-14 02:33:11] 2026-05-14 06:32:11,803 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-14 02:33:11] 2026-05-14 06:32:11,803 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-14 02:33:11] 2026-05-14 06:32:11,804 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-14 02:33:11] 2026-05-14 06:32:11,804 | INFO     | will abort loop
[2026-05-14 02:33:11] 2026-05-14 06:32:12,365 | INFO     | all job control threads have been joined
[2026-05-14 02:33:11] 2026-05-14 06:32:12,534 | INFO     | [job] retrieve thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:12,569 | INFO     | [payload] execute_payloads thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:12,570 | INFO     | all data control threads have been joined
[2026-05-14 02:33:11] 2026-05-14 06:32:12,752 | INFO     | all payload control threads have been joined
[2026-05-14 02:33:11] 2026-05-14 06:32:12,793 | INFO     | [data] copytool_in thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:12,810 | INFO     | [job] job monitor thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:12,870 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-14 02:33:11] 2026-05-14 06:32:13,163 | INFO     | [payload] failed_post thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:13,353 | INFO     | [job] validate thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:13,371 | INFO     | [job] control thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:13,518 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:13,576 | INFO     | [data] control thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:13,757 | INFO     | [payload] control thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:13,809 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-14 02:33:11] 2026-05-14 06:32:13,811 | INFO     | [job] create_data_payload thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:13,836 | INFO     | [payload] validate_post thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:13,907 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-14 02:33:11] 2026-05-14 06:32:13,992 | INFO     | [payload] validate_pre thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:14,814 | INFO     | [job] queue monitor thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:14,875 | INFO     | [data] copytool_out thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:17,914 | INFO     | [data] queue_monitor thread has finished
[2026-05-14 02:33:11] 2026-05-14 06:32:41,871 | INFO     | PID=613922 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-14 02:33:11] 2026-05-14 06:32:41,871 | INFO     | .. there are 24 such processes running
[2026-05-14 02:33:11] 2026-05-14 06:32:41,872 | INFO     | found 0 job(s) in 20 queues
[2026-05-14 02:33:11] 2026-05-14 06:32:41,872 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-14 02:33:11] 2026-05-14 06:32:41,872 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-14 02:33:11] 2026-05-14 06:33:05,406 | INFO     | [monitor] cgroup control has ended
[2026-05-14 02:33:11] 2026-05-14 06:33:05,909 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140695598376768)>', '<ExcThread(monitor, started 140695058765568)>']
[2026-05-14 02:33:11] 2026-05-14 06:33:06,009 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-14 02:33:11] 2026-05-14 06:33:06,009 | INFO     | [monitor] control thread has ended
[2026-05-14 02:33:11] 2026-05-14 06:33:10,935 | INFO     | all workflow threads have been joined
[2026-05-14 02:33:11] 2026-05-14 06:33:10,935 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-14 02:33:11] 2026-05-14 06:33:10,935 | INFO     | traces error code: 0
[2026-05-14 02:33:11] 2026-05-14 06:33:10,935 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-14 02:33:11] 2026-05-14 06:33:11,179 [wrapper] ==== pilot stdout END ====
[2026-05-14 02:33:11] 2026-05-14 06:33:11,183 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-14 02:33:11] 2026-05-14 06:33:11,187 [wrapper] pilotpid: 613922
[2026-05-14 02:33:11] 2026-05-14 06:33:11,190 [wrapper] Pilot exit status: 0
[2026-05-14 02:33:11] 2026-05-14 06:33:11,202 [wrapper] pandaids: 7138263752
[2026-05-14 02:33:11] 2026-05-14 06:33:11,307 [wrapper] cleanup supervisor_pilot  613937 613923
[2026-05-14 02:33:11] 2026-05-14 06:33:11,310 [wrapper] Test setup, not cleaning
[2026-05-14 02:33:11] 2026-05-14 06:33:11,313 [wrapper] apfmon messages muted
[2026-05-14 02:33:11] 2026-05-14 06:33:11,315 [wrapper] ==== wrapper stdout END ====
[2026-05-14 02:33:11] 2026-05-14 06:33:11,322 [wrapper] ==== wrapper stderr END ====
[2026-05-14 02:33:11]  *** Error codes and diagnostics ***
[2026-05-14 02:33:11]     "exeErrorCode": 65,
[2026-05-14 02:33:11]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-05-14 02:33:11]     "pilotErrorCode": 1305,
[2026-05-14 02:33:11]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-05-14 02:33:11]  *** Listing of results directory ***
[2026-05-14 02:33:11] total 267196
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas    683926 May 14 00:07 pilot3.tar.gz
[2026-05-14 02:33:11] -rwx------. 1 boincer umatlas     36281 May 14 00:41 runpilot2-wrapper.sh
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas      5631 May 14 00:42 queuedata.json
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas       100 May 14 02:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-14 02:33:11] -rwxr-xr-x. 1 boincer umatlas      7986 May 14 02:28 run_atlas
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas       105 May 14 02:28 job.xml
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas      6765 May 14 02:28 init_data.xml
[2026-05-14 02:33:11] -rw-r--r--. 2 boincer umatlas 269284439 May 14 02:28 EVNT.50238180._000026.pool.root.1
[2026-05-14 02:33:11] -rw-r--r--. 2 boincer umatlas     15667 May 14 02:28 start_atlas.sh
[2026-05-14 02:33:11] drwxrwx--x. 2 boincer umatlas      4096 May 14 02:28 shared
[2026-05-14 02:33:11] -rw-r--r--. 2 boincer umatlas    697436 May 14 02:28 input.tar.gz
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas         0 May 14 02:28 boinc_lockfile
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas      2560 May 14 02:28 pandaJob.out
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas        57 May 14 02:28 setup.sh.local
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas    992945 May 14 02:28 agis_schedconf.cvmfs.json
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas   1502367 May 14 02:28 agis_ddmendpoints.agis.ALL.json
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas       444 May 14 02:29 workernode_map.json
[2026-05-14 02:33:11] drwx------. 5 boincer umatlas      4096 May 14 02:29 pilot3
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas       481 May 14 02:29 boinc_task_state.xml
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas       978 May 14 02:30 memory_monitor_summary.json
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas     21072 May 14 02:30 log.50250204._000643.job.log.tgz.1
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas        95 May 14 02:32 pilot_heartbeat.json
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas      7097 May 14 02:32 heartbeat_new.json
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas      7059 May 14 02:32 heartbeat.json
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas        23 May 14 02:33 wrapper_checkpoint.txt
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas      8192 May 14 02:33 boinc_mmap_file
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas      5008 May 14 02:33 pilotlog.txt
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas     81307 May 14 02:33 log.50250204._000643.job.log.1
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas       188 May 14 02:33 output.list
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas       410 May 14 02:33 runtime_log
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas    122880 May 14 02:33 result.tar.gz
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas      8821 May 14 02:33 runtime_log.err
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas       641 May 14 02:33 5297a2550e74.diag
[2026-05-14 02:33:11] -rw-r--r--. 1 boincer umatlas     21650 May 14 02:33 stderr.txt
[2026-05-14 02:33:11] No HITS result produced
[2026-05-14 02:33:11]  *** Contents of shared directory: ***
[2026-05-14 02:33:11] total 263796
[2026-05-14 02:33:11] -rw-r--r--. 2 boincer umatlas 269284439 May 14 02:28 ATLAS.root_0
[2026-05-14 02:33:11] -rw-r--r--. 2 boincer umatlas     15667 May 14 02:28 start_atlas.sh
[2026-05-14 02:33:11] -rw-r--r--. 2 boincer umatlas    697436 May 14 02:28 input.tar.gz
[2026-05-14 02:33:11] -rw-------. 1 boincer umatlas    122880 May 14 02:33 result.tar.gz
02:33:13 (603677): run_atlas exited; CPU time 31.663903
02:33:13 (603677): called boinc_finish(0)

</stderr_txt>
]]>

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