Stderr output

<core_client_version>8.2.11</core_client_version>
<![CDATA[
<stderr_txt>
06:01:05 (19352): wrapper (7.7.26015): starting
06:01:05 (19352): wrapper: running run_atlas (--nthreads 8)
[2026-05-14 06:01:05] Arguments: --nthreads 8
[2026-05-14 06:01:05] Threads: 8
[2026-05-14 06:01:05] Checking for CVMFS
[2026-05-14 06:01:05] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-14 06:01:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-14 06:01:05] Running cvmfs_config stat atlas.cern.ch
[2026-05-14 06:01:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-14 06:01:06] 2.11.0.0 6631 2599 36804 159508 0 8 487456 4096001 182 130560 0 17368 98.710 107380 452 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-05-14 06:01:06] CVMFS is ok
[2026-05-14 06:01:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-14 06:01:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-14 06:01:06] Further information can be found at the LHC@home message board.
[2026-05-14 06:01:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-14 06:01:06] Checking for apptainer binary...
[2026-05-14 06:01:06] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-05-14 06:01:06] apptainer is not installed, using version from CVMFS
[2026-05-14 06:01:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-14 06:01:06] WARNING: Environment variable TMPDIR already has value [/tmp/job_11610058/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node189
[2026-05-14 06:01:06] apptainer works
[2026-05-14 06:01:06] Set ATHENA_PROC_NUMBER=8
[2026-05-14 06:01:06] Set ATHENA_CORE_NUMBER=8
[2026-05-14 06:01:06] Starting ATLAS job with PandaID=7138653182
[2026-05-14 06:01:06] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11610058/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-14 06:10:39]  *** The last 200 lines of the pilot log: ***
[2026-05-14 06:10:39] 2026-05-14 04:09:30,861 | INFO     | extracted standard info from prmon json
[2026-05-14 06:10:39] 2026-05-14 04:09:30,861 | INFO     | extracted standard memory fields from prmon json
[2026-05-14 06:10:39] 2026-05-14 04:09:30,861 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | WARNING  | wrong length of table data, x=[1778731407.0, 1778731468.0, 1778731529.0, 1778731590.0, 1778731651.0], y=[10915.0, 24659.0, 84372.0, 169012.0, 0.0] (must be same an
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | could have reported an average CPU frequency of 2583 MHz (4 samples)
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | ..............................
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . Timing measurements:
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . get job = 0 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . initial setup = 18 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . payload setup = 40 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . stage-in = 0 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . payload execution = 247 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . stage-out = 0 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . log creation = 0 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | ..............................
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | executing command: tail -n 20 /tmp/job_11610058/atlas/pilot/slots/0/PanDA_Pilot-7138653182/pilotlog.txt
[2026-05-14 06:10:39] 2026-05-14 04:09:30,869 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-05-14 06:10:39] - Log from pilotlog.txt -
[2026-05-14 06:10:39] 2026-05-14 04:09:30,844 | INFO     | payload/TRF did not report the number of read events
[2026-05-14 06:10:39] 2026-05-14 04:09:30,861 | INFO     | using path: /tmp/job_11610058/atlas/pilot/slots/0/PanDA_Pilot-7138653182/memory_monitor_summary.json (trf name=prmon)
[2026-05-14 06:10:39] 2026-05-14 04:09:30,861 | INFO     | extracted standard info from prmon json
[2026-05-14 06:10:39] 2026-05-14 04:09:30,861 | INFO     | extracted standard memory fields from prmon json
[2026-05-14 06:10:39] 2026-05-14 04:09:30,861 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | WARNING  | wrong length of table data, x=[1778731407.0, 1778731468.0, 1778731529.0, 1778731590.0, 1778731651.0], y=[10915.0, 24659.0, 84372.0, 169012.0, 0.0] (must be same an
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | could have reported an average CPU frequency of 2583 MHz (4 samples)
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | ..............................
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . Timing measurements:
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . get job = 0 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . initial setup = 18 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . payload setup = 40 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . stage-in = 0 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . payload execution = 247 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . stage-out = 0 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . log creation = 0 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | ..............................
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | executing command: tail -n 20 /tmp/job_11610058/atlas/pilot/slots/0/PanDA_Pilot-7138653182/pilotlog.txt
[2026-05-14 06:10:39] 2026-05-14 04:09:30,869 | WARNING  | 
[2026-05-14 06:10:39] [begin log extracts]
[2026-05-14 06:10:39] - Log from pilotlog.txt -
[2026-05-14 06:10:39] 2026-05-14 04:09:30,844 | INFO     | payload/TRF did not report the number of read events
[2026-05-14 06:10:39] 2026-05-14 04:09:30,861 | INFO     | using path: /tmp/job_11610058/atlas/pilot/slots/0/PanDA_Pilot-7138653182/memory_monitor_summary.json (trf name=prmon)
[2026-05-14 06:10:39] 2026-05-14 04:09:30,861 | INFO     | extracted standard info from prmon json
[2026-05-14 06:10:39] 2026-05-14 04:09:30,861 | INFO     | extracted standard memory fields from prmon json
[2026-05-14 06:10:39] 2026-05-14 04:09:30,861 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | WARNING  | wrong length of table data, x=[1778731407.0, 1778731468.0, 1778731529.0, 1778731590.0, 1778731651.0], y=[10915.0, 24659.0, 84372.0, 169012.0, 0.0] (must be same an
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | could have reported an average CPU frequency of 2583 MHz (4 samples)
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | ..............................
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . Timing measurements:
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . get job = 0 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . initial setup = 18 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . payload setup = 40 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . stage-in = 0 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . payload execution = 247 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . stage-out = 0 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | . log creation = 0 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | ..............................
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-14 06:10:39] 2026-05-14 04:09:30,862 | INFO     | executing command: tail -n 20 /tmp/job_11610058/atlas/pilot/slots/0/PanDA_Pilot-7138653182/pilotlog.txt
[2026-05-14 06:10:39] [end log extracts]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,869 | WARNING  | pilot_error_code(s) = [1305] (will report primary/first error code)
[2026-05-14 06:10:39] 2026-05-14 04:09:30,870 | WARNING  | pilot_error_diag(s) = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero retu
[2026-05-14 06:10:39] 2026-05-14 04:09:30,917 | INFO     | 
[2026-05-14 06:10:39] 2026-05-14 04:09:30,917 | INFO     | job summary report
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | --------------------------------------------------
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | PanDA job id: 7138653182
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | task id: 50250192
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-05-14 06:07:27,465 CRITICAL Transform executor raised TransformValidationExceptio
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | pilot state: failed 
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | transexitcode: 65
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | exeerrorcode: 65
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | exitcode: 65
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | cpuconsumptiontime: 14 s
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | nevents: 0
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | neventsw: 0
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | pid: 19049
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | pgrp: 19049
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | corecount: 8
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | event service: False
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | sizes: {0: 2265946, 1: 2267576, 11: 2267604, 292: 2291192, 293: 2295558, 408: 2295696}
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | --------------------------------------------------
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | 
[2026-05-14 06:10:39] 2026-05-14 04:09:30,918 | INFO     | executing command: ls -lF /tmp/job_11610058/atlas/pilot/slots/0
[2026-05-14 06:10:39] 2026-05-14 04:09:30,927 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,927 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,927 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,927 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | job 7138653182 has completed (purged errors)
[2026-05-14 06:10:39] 2026-05-14 04:09:30,928 | INFO     | overall cleanup function is called
[2026-05-14 06:10:39] 2026-05-14 04:09:31,934 | INFO     | --- collectZombieJob: --- 10, [19049]
[2026-05-14 06:10:39] 2026-05-14 04:09:31,934 | INFO     | zombie collector waiting for pid 19049
[2026-05-14 06:10:39] 2026-05-14 04:09:31,934 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-14 06:10:39] 2026-05-14 04:09:31,934 | INFO     | collected zombie processes
[2026-05-14 06:10:39] 2026-05-14 04:09:31,934 | INFO     | will attempt to kill all subprocesses of pid=19049
[2026-05-14 06:10:39] 2026-05-14 04:09:32,026 | INFO     | process IDs to be killed: [19049] (in reverse order)
[2026-05-14 06:10:39] 2026-05-14 04:09:32,069 | WARNING  | found no corresponding commands to process id(s)
[2026-05-14 06:10:39] 2026-05-14 04:09:32,069 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-14 06:10:39] 2026-05-14 04:09:32,073 | INFO     | did not find any defunct processes belonging to 19049
[2026-05-14 06:10:39] 2026-05-14 04:09:32,077 | INFO     | did not find any defunct processes belonging to 19049
[2026-05-14 06:10:39] 2026-05-14 04:09:32,077 | INFO     | Ready for new job
[2026-05-14 06:10:39] 2026-05-14 04:09:32,078 | INFO     | ***************************************
[2026-05-14 06:10:39] 2026-05-14 04:09:32,078 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-14 06:10:39] 2026-05-14 04:09:32,078 | INFO     | ***************************************
[2026-05-14 06:10:39] 2026-05-14 04:09:32,078 | INFO     | 
[2026-05-14 06:10:39] 2026-05-14 04:09:32,092 | INFO     | architecture information:
[2026-05-14 06:10:39] 2026-05-14 04:09:32,093 | INFO     | executing command: cat /etc/os-release
[2026-05-14 06:10:39] 2026-05-14 04:09:32,099 | INFO     | cat /etc/os-release:
[2026-05-14 06:10:39] NAME="CentOS Linux"
[2026-05-14 06:10:39] VERSION="7 (Core)"
[2026-05-14 06:10:39] ID="centos"
[2026-05-14 06:10:39] ID_LIKE="rhel fedora"
[2026-05-14 06:10:39] VERSION_ID="7"
[2026-05-14 06:10:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-14 06:10:39] ANSI_COLOR="0;31"
[2026-05-14 06:10:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-14 06:10:39] HOME_URL="https://www.centos.org/"
[2026-05-14 06:10:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-14 06:10:39] 
[2026-05-14 06:10:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-14 06:10:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-14 06:10:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-14 06:10:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-14 06:10:39] 
[2026-05-14 06:10:39] 2026-05-14 04:09:32,099 | INFO     | ***************************************
[2026-05-14 06:10:39] 2026-05-14 04:09:32,602 | INFO     | executing command: df -mP /tmp/job_11610058/atlas/pilot/slots/0
[2026-05-14 06:10:39] 2026-05-14 04:09:32,608 | INFO     | sufficient remaining disk space (228920918016 B)
[2026-05-14 06:10:39] 2026-05-14 04:09:32,608 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-14 06:10:39] 2026-05-14 04:09:32,608 | INFO     | current server update state: UPDATING_FINAL
[2026-05-14 06:10:39] 2026-05-14 04:09:32,608 | INFO     | update_server=False
[2026-05-14 06:10:39] 2026-05-14 04:09:32,608 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-14 06:10:39] 2026-05-14 04:09:32,608 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-14 06:10:39] 2026-05-14 04:09:32,717 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-14 06:10:39] 2026-05-14 04:09:32,717 | INFO     | aborting loop
[2026-05-14 06:10:39] 2026-05-14 04:09:32,862 | INFO     | all job control threads have been joined
[2026-05-14 06:10:39] 2026-05-14 04:09:32,875 | INFO     | all payload control threads have been joined
[2026-05-14 06:10:39] 2026-05-14 04:09:32,905 | INFO     | all data control threads have been joined
[2026-05-14 06:10:39] 2026-05-14 04:09:33,613 | INFO     | [job] queue monitor thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:33,614 | INFO     | [job] retrieve thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:33,682 | INFO     | [payload] validate_post thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:33,684 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-14 06:10:39] 2026-05-14 04:09:33,723 | INFO     | [job] job monitor thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:33,867 | INFO     | [job] control thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:33,868 | INFO     | [job] validate thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:33,880 | INFO     | [payload] control thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:33,910 | INFO     | [data] control thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:33,972 | INFO     | [job] create_data_payload thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:34,076 | INFO     | [payload] validate_pre thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:34,175 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-14 06:10:39] 2026-05-14 04:09:34,319 | INFO     | [data] copytool_in thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:34,481 | INFO     | [payload] failed_post thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:34,516 | INFO     | [payload] execute_payloads thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:35,009 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:35,689 | INFO     | [data] copytool_out thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:09:38,181 | INFO     | [data] queue_monitor thread has finished
[2026-05-14 06:10:39] 2026-05-14 04:10:03,173 | INFO     | PID=11536 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-14 06:10:39] 2026-05-14 04:10:03,173 | INFO     | .. there are 8 such processes running
[2026-05-14 06:10:39] 2026-05-14 04:10:03,173 | INFO     | found 0 job(s) in 20 queues
[2026-05-14 06:10:39] 2026-05-14 04:10:03,173 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-14 06:10:39] 2026-05-14 04:10:03,173 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-14 06:10:39] 2026-05-14 04:10:31,711 | INFO     | [monitor] cgroup control has ended
[2026-05-14 06:10:39] 2026-05-14 04:10:33,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456059037440)>']
[2026-05-14 06:10:39] 2026-05-14 04:10:34,328 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-14 06:10:39] 2026-05-14 04:10:34,328 | INFO     | [monitor] control thread has ended
[2026-05-14 06:10:39] 2026-05-14 04:10:38,846 | INFO     | all workflow threads have been joined
[2026-05-14 06:10:39] 2026-05-14 04:10:38,847 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-14 06:10:39] 2026-05-14 04:10:38,847 | INFO     | traces error code: 0
[2026-05-14 06:10:39] 2026-05-14 04:10:38,847 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-14 06:10:39] 2026-05-14 04:10:38,898 [wrapper] ==== pilot stdout END ====
[2026-05-14 06:10:39] 2026-05-14 04:10:38,899 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-14 06:10:39] 2026-05-14 04:10:38,901 [wrapper] pilotpid: 11536
[2026-05-14 06:10:39] 2026-05-14 04:10:38,902 [wrapper] Pilot exit status: 0
[2026-05-14 06:10:39] 2026-05-14 04:10:38,905 [wrapper] pandaids: 7138653182
[2026-05-14 06:10:39] 2026-05-14 04:10:38,928 [wrapper] cleanup supervisor_pilot 11576 11542
[2026-05-14 06:10:39] 2026-05-14 04:10:38,930 [wrapper] Test setup, not cleaning
[2026-05-14 06:10:39] 2026-05-14 04:10:38,931 [wrapper] apfmon messages muted
[2026-05-14 06:10:39] 2026-05-14 04:10:38,932 [wrapper] ==== wrapper stdout END ====
[2026-05-14 06:10:39] 2026-05-14 04:10:38,933 [wrapper] ==== wrapper stderr END ====
[2026-05-14 06:10:39]  *** Error codes and diagnostics ***
[2026-05-14 06:10:39]     "exeErrorCode": 65,
[2026-05-14 06:10:39]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-05-14 06:10:39]     "pilotErrorCode": 1305,
[2026-05-14 06:10:39]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-05-14 06:10:39]  *** Listing of results directory ***
[2026-05-14 06:10:39] total 105964
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user    683926 May 14 00:05 pilot3.tar.gz
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user      5631 May 14 00:06 queuedata.json
[2026-05-14 06:10:39] -rwx------ 1 mf493845 unix-user     36281 May 14 00:06 runpilot2-wrapper.sh
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user       100 May 14 05:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-14 06:10:39] -rwxr-xr-x 1 mf493845 unix-user      7986 May 14 05:34 run_atlas
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user       105 May 14 05:34 job.xml
[2026-05-14 06:10:39] -rw-r--r-- 2 mf493845 unix-user 104159085 May 14 06:01 EVNT.50238157._000293.pool.root.1
[2026-05-14 06:10:39] -rw-r--r-- 2 mf493845 unix-user     15667 May 14 06:01 start_atlas.sh
[2026-05-14 06:10:39] drwxrwx--x 2 mf493845 unix-user       100 May 14 06:01 shared
[2026-05-14 06:10:39] -rw-r--r-- 2 mf493845 unix-user    697442 May 14 06:01 input.tar.gz
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user      6308 May 14 06:01 init_data.xml
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user         0 May 14 06:01 boinc_setup_complete
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user      8192 May 14 06:01 boinc_mmap_file
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user         0 May 14 06:01 boinc_lockfile
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user      2559 May 14 06:01 pandaJob.out
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user    999061 May 14 06:02 agis_schedconf.cvmfs.json
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user   1502367 May 14 06:02 agis_ddmendpoints.agis.ALL.json
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user       414 May 14 06:02 workernode_map.json
[2026-05-14 06:10:39] drwx------ 5 mf493845 unix-user       520 May 14 06:02 pilot3
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user       991 May 14 06:07 memory_monitor_summary.json
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user     24910 May 14 06:07 log.50250192._017561.job.log.tgz.1
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user        95 May 14 06:09 pilot_heartbeat.json
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user      7066 May 14 06:09 heartbeat_new.json
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user      7027 May 14 06:09 heartbeat.json
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user      4834 May 14 06:10 pilotlog.txt
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user    101789 May 14 06:10 log.50250192._017561.job.log.1
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user       188 May 14 06:10 output.list
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user       410 May 14 06:10 runtime_log
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user    143360 May 14 06:10 result.tar.gz
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user      8689 May 14 06:10 runtime_log.err
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user       632 May 14 06:10 f5f7bb956484.diag
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user     22550 May 14 06:10 stderr.txt
[2026-05-14 06:10:39] No HITS result produced
[2026-05-14 06:10:39]  *** Contents of shared directory: ***
[2026-05-14 06:10:39] total 102560
[2026-05-14 06:10:39] -rw-r--r-- 2 mf493845 unix-user 104159085 May 14 06:01 ATLAS.root_0
[2026-05-14 06:10:39] -rw-r--r-- 2 mf493845 unix-user     15667 May 14 06:01 start_atlas.sh
[2026-05-14 06:10:39] -rw-r--r-- 2 mf493845 unix-user    697442 May 14 06:01 input.tar.gz
[2026-05-14 06:10:39] -rw------- 1 mf493845 unix-user    143360 May 14 06:10 result.tar.gz
06:10:40 (19352): run_atlas exited; CPU time 15.006353
06:10:40 (19352): called boinc_finish(0)

</stderr_txt>
]]>

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