Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:54:12 (491576): wrapper (7.7.26015): starting
20:54:12 (491576): wrapper: running run_atlas (--nthreads 8)
[2026-05-13 20:54:12] Arguments: --nthreads 8
[2026-05-13 20:54:12] Threads: 8
[2026-05-13 20:54:12] Checking for CVMFS
[2026-05-13 20:54:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-13 20:54:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-13 20:54:12] Running cvmfs_config stat atlas.cern.ch
[2026-05-13 20:54:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-13 20:54:13] 2.13.3.0 9659 19390 212036 159503 2 542 24799011 32935936 22551 16776704 0 62358791 99.572 81955381 32487 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-05-13 20:54:13] CVMFS is ok
[2026-05-13 20:54:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-13 20:54:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-13 20:54:13] Further information can be found at the LHC@home message board.
[2026-05-13 20:54:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-13 20:54:13] Checking for apptainer binary...
[2026-05-13 20:54:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-13 20:54:13] Running /usr/bin/apptainer --version
[2026-05-13 20:54:13] apptainer version 1.4.5-3.el9
[2026-05-13 20:54:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-13 20:54:14] c-6-3.aglt2.org
[2026-05-13 20:54:14] apptainer works
[2026-05-13 20:54:14] Set ATHENA_PROC_NUMBER=8
[2026-05-13 20:54:14] Set ATHENA_CORE_NUMBER=8
[2026-05-13 20:54:14] Starting ATLAS job with PandaID=7138588041
[2026-05-13 20:54:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-13 21:00:25]  *** The last 200 lines of the pilot log: ***
[2026-05-13 21:00:25] 2026-05-14 00:59:38,323 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-13 21:00:25] 2026-05-14 00:59:38,323 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-13 21:00:25] 2026-05-14 00:59:38,323 | WARNING  | wrong length of table data, x=[1778720200.0], y=[1597.0] (must be same and length>=4)
[2026-05-13 21:00:25] 2026-05-14 00:59:38,323 | INFO     | could have reported an average CPU frequency of 2600 MHz (4 samples)
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | ..............................
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . Timing measurements:
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . get job = 0 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . initial setup = 22 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . payload setup = 64 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . stage-in = 0 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . payload execution = 68 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . stage-out = 0 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . log creation = 0 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | ..............................
[2026-05-13 21:00:25] 2026-05-14 00:59:38,325 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-13 21:00:25] 2026-05-14 00:59:38,333 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7138588041/pilotlog.txt
[2026-05-13 21:00:25] 2026-05-14 00:59:38,469 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-05-13 21:00:25] - Log from pilotlog.txt -
[2026-05-13 21:00:25] 2026-05-14 00:59:38,299 | INFO     | payload/TRF did not report the number of read events
[2026-05-13 21:00:25] 2026-05-14 00:59:38,321 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7138588041/memory_monitor_summary.json (trf name=prmon)
[2026-05-13 21:00:25] 2026-05-14 00:59:38,322 | INFO     | extracted standard info from prmon json
[2026-05-13 21:00:25] 2026-05-14 00:59:38,322 | INFO     | extracted standard memory fields from prmon json
[2026-05-13 21:00:25] 2026-05-14 00:59:38,323 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-13 21:00:25] 2026-05-14 00:59:38,323 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-13 21:00:25] 2026-05-14 00:59:38,323 | WARNING  | wrong length of table data, x=[1778720200.0], y=[1597.0] (must be same and length>=4)
[2026-05-13 21:00:25] 2026-05-14 00:59:38,323 | INFO     | could have reported an average CPU frequency of 2600 MHz (4 samples)
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | ..............................
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . Timing measurements:
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . get job = 0 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . initial setup = 22 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . payload setup = 64 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . stage-in = 0 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . payload execution = 68 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . stage-out = 0 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . log creation = 0 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | ..............................
[2026-05-13 21:00:25] 2026-05-14 00:59:38,325 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-13 21:00:25] 2026-05-14 00:59:38,333 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7138588041/pilotlog.txt
[2026-05-13 21:00:25] 2026-05-14 00:59:38,470 | WARNING  | 
[2026-05-13 21:00:25] [begin log extracts]
[2026-05-13 21:00:25] - Log from pilotlog.txt -
[2026-05-13 21:00:25] 2026-05-14 00:59:38,299 | INFO     | payload/TRF did not report the number of read events
[2026-05-13 21:00:25] 2026-05-14 00:59:38,321 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7138588041/memory_monitor_summary.json (trf name=prmon)
[2026-05-13 21:00:25] 2026-05-14 00:59:38,322 | INFO     | extracted standard info from prmon json
[2026-05-13 21:00:25] 2026-05-14 00:59:38,322 | INFO     | extracted standard memory fields from prmon json
[2026-05-13 21:00:25] 2026-05-14 00:59:38,323 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-13 21:00:25] 2026-05-14 00:59:38,323 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-13 21:00:25] 2026-05-14 00:59:38,323 | WARNING  | wrong length of table data, x=[1778720200.0], y=[1597.0] (must be same and length>=4)
[2026-05-13 21:00:25] 2026-05-14 00:59:38,323 | INFO     | could have reported an average CPU frequency of 2600 MHz (4 samples)
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | ..............................
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . Timing measurements:
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . get job = 0 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . initial setup = 22 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . payload setup = 64 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . stage-in = 0 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . payload execution = 68 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . stage-out = 0 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | . log creation = 0 s
[2026-05-13 21:00:25] 2026-05-14 00:59:38,324 | INFO     | ..............................
[2026-05-13 21:00:25] 2026-05-14 00:59:38,325 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-13 21:00:25] 2026-05-14 00:59:38,333 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7138588041/pilotlog.txt
[2026-05-13 21:00:25] [end log extracts]
[2026-05-13 21:00:25] 2026-05-14 00:59:38,470 | WARNING  | pilot_error_code(s) = [1305] (will report primary/first error code)
[2026-05-13 21:00:25] 2026-05-14 00:59:38,471 | WARNING  | pilot_error_diag(s) = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero retu
[2026-05-13 21:00:25] 2026-05-14 00:59:39,784 | INFO     | 
[2026-05-13 21:00:25] 2026-05-14 00:59:39,784 | INFO     | job summary report
[2026-05-13 21:00:25] 2026-05-14 00:59:39,785 | INFO     | --------------------------------------------------
[2026-05-13 21:00:25] 2026-05-14 00:59:39,785 | INFO     | PanDA job id: 7138588041
[2026-05-13 21:00:25] 2026-05-14 00:59:39,785 | INFO     | task id: 50250192
[2026-05-13 21:00:25] 2026-05-14 00:59:39,785 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-05-14 00:57:27,289 CRITICAL Transform executor raised TransformValidationExceptio
[2026-05-13 21:00:25] 2026-05-14 00:59:39,785 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-13 21:00:25] 2026-05-14 00:59:39,785 | INFO     | pilot state: failed 
[2026-05-13 21:00:25] 2026-05-14 00:59:39,785 | INFO     | transexitcode: 65
[2026-05-13 21:00:25] 2026-05-14 00:59:39,785 | INFO     | exeerrorcode: 65
[2026-05-13 21:00:25] 2026-05-14 00:59:39,786 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-05-13 21:00:25] 2026-05-14 00:59:39,786 | INFO     | exitcode: 65
[2026-05-13 21:00:25] 2026-05-14 00:59:39,786 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-05-13 21:00:25] 2026-05-14 00:59:39,786 | INFO     | cpuconsumptiontime: 29 s
[2026-05-13 21:00:25] 2026-05-14 00:59:39,786 | INFO     | nevents: 0
[2026-05-13 21:00:25] 2026-05-14 00:59:39,786 | INFO     | neventsw: 0
[2026-05-13 21:00:25] 2026-05-14 00:59:39,786 | INFO     | pid: 507836
[2026-05-13 21:00:25] 2026-05-14 00:59:39,786 | INFO     | pgrp: 507836
[2026-05-13 21:00:25] 2026-05-14 00:59:39,786 | INFO     | corecount: 8
[2026-05-13 21:00:25] 2026-05-14 00:59:39,787 | INFO     | event service: False
[2026-05-13 21:00:25] 2026-05-14 00:59:39,787 | INFO     | sizes: {0: 2265649, 1: 2267478, 137: 2290953, 138: 2290929, 139: 2295252, 141: 2295280, 260: 2295574}
[2026-05-13 21:00:25] 2026-05-14 00:59:39,787 | INFO     | --------------------------------------------------
[2026-05-13 21:00:25] 2026-05-14 00:59:39,787 | INFO     | 
[2026-05-13 21:00:25] 2026-05-14 00:59:39,787 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-05-13 21:00:25] 2026-05-14 00:59:39,993 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,994 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,994 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,994 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,994 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,994 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,995 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,995 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,995 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,995 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,995 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,995 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,995 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,995 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,996 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,996 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:39,996 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:40,003 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-13 21:00:25] 2026-05-14 00:59:40,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:40,004 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-13 21:00:25] 2026-05-14 00:59:40,004 | INFO     | job 7138588041 has completed (purged errors)
[2026-05-13 21:00:25] 2026-05-14 00:59:40,004 | INFO     | overall cleanup function is called
[2026-05-13 21:00:25] 2026-05-14 00:59:41,014 | INFO     | --- collectZombieJob: --- 10, [507836]
[2026-05-13 21:00:25] 2026-05-14 00:59:41,014 | INFO     | zombie collector waiting for pid 507836
[2026-05-13 21:00:25] 2026-05-14 00:59:41,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-13 21:00:25] 2026-05-14 00:59:41,014 | INFO     | collected zombie processes
[2026-05-13 21:00:25] 2026-05-14 00:59:41,015 | INFO     | will attempt to kill all subprocesses of pid=507836
[2026-05-13 21:00:25] 2026-05-14 00:59:41,935 | INFO     | PID=501896 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-13 21:00:25] 2026-05-14 00:59:41,935 | INFO     | .. there are 35 such processes running
[2026-05-13 21:00:25] 2026-05-14 00:59:42,313 | INFO     | process IDs to be killed: [507836] (in reverse order)
[2026-05-13 21:00:25] 2026-05-14 00:59:42,557 | WARNING  | found no corresponding commands to process id(s)
[2026-05-13 21:00:25] 2026-05-14 00:59:42,557 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-13 21:00:25] 2026-05-14 00:59:42,704 | INFO     | did not find any defunct processes belonging to 507836
[2026-05-13 21:00:25] 2026-05-14 00:59:42,848 | INFO     | did not find any defunct processes belonging to 507836
[2026-05-13 21:00:25] 2026-05-14 00:59:42,869 | INFO     | Ready for new job
[2026-05-13 21:00:25] 2026-05-14 00:59:42,871 | INFO     | ***************************************
[2026-05-13 21:00:25] 2026-05-14 00:59:42,871 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-13 21:00:25] 2026-05-14 00:59:42,871 | INFO     | ***************************************
[2026-05-13 21:00:25] 2026-05-14 00:59:42,871 | INFO     | 
[2026-05-13 21:00:25] 2026-05-14 00:59:42,894 | INFO     | architecture information:
[2026-05-13 21:00:25] 2026-05-14 00:59:42,913 | INFO     | executing command: cat /etc/os-release
[2026-05-13 21:00:25] 2026-05-14 00:59:43,097 | INFO     | cat /etc/os-release:
[2026-05-13 21:00:25] NAME="CentOS Linux"
[2026-05-13 21:00:25] VERSION="7 (Core)"
[2026-05-13 21:00:25] ID="centos"
[2026-05-13 21:00:25] ID_LIKE="rhel fedora"
[2026-05-13 21:00:25] VERSION_ID="7"
[2026-05-13 21:00:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-13 21:00:25] ANSI_COLOR="0;31"
[2026-05-13 21:00:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-13 21:00:25] HOME_URL="https://www.centos.org/"
[2026-05-13 21:00:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-13 21:00:25] 
[2026-05-13 21:00:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-13 21:00:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-13 21:00:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-13 21:00:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-13 21:00:25] 
[2026-05-13 21:00:25] 2026-05-14 00:59:43,098 | INFO     | ***************************************
[2026-05-13 21:00:25] 2026-05-14 00:59:43,612 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-05-13 21:00:25] 2026-05-14 00:59:43,806 | INFO     | sufficient remaining disk space (75872862208 B)
[2026-05-13 21:00:25] 2026-05-14 00:59:43,807 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-13 21:00:25] 2026-05-14 00:59:43,807 | INFO     | current server update state: UPDATING_FINAL
[2026-05-13 21:00:25] 2026-05-14 00:59:43,807 | INFO     | update_server=False
[2026-05-13 21:00:25] 2026-05-14 00:59:43,807 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-13 21:00:25] 2026-05-14 00:59:43,838 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-13 21:00:25] 2026-05-14 00:59:43,838 | INFO     | aborting loop
[2026-05-13 21:00:25] 2026-05-14 00:59:44,314 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-13 21:00:25] 2026-05-14 00:59:44,392 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-13 21:00:25] 2026-05-14 00:59:44,547 | INFO     | all payload control threads have been joined
[2026-05-13 21:00:25] 2026-05-14 00:59:44,680 | INFO     | all data control threads have been joined
[2026-05-13 21:00:25] 2026-05-14 00:59:44,741 | INFO     | all job control threads have been joined
[2026-05-13 21:00:25] 2026-05-14 00:59:44,816 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-13 21:00:25] 2026-05-14 00:59:44,831 | INFO     | [job] retrieve thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:44,846 | INFO     | [job] job monitor thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:44,975 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:45,034 | INFO     | [payload] execute_payloads thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:45,071 | INFO     | [payload] failed_post thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:45,195 | INFO     | [data] copytool_in thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:45,199 | INFO     | [job] validate thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:45,305 | INFO     | [payload] validate_post thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:45,401 | INFO     | [job] queue monitor thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:45,572 | INFO     | [payload] control thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:45,698 | INFO     | [data] control thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:45,748 | INFO     | [job] control thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:45,811 | INFO     | [job] create_data_payload thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:46,248 | INFO     | [payload] validate_pre thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:46,825 | INFO     | [data] copytool_out thread has finished
[2026-05-13 21:00:25] 2026-05-14 00:59:48,348 | INFO     | [data] queue_monitor thread has finished
[2026-05-13 21:00:25] 2026-05-14 01:00:14,611 | INFO     | PID=501896 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-13 21:00:25] 2026-05-14 01:00:14,611 | INFO     | .. there are 35 such processes running
[2026-05-13 21:00:25] 2026-05-14 01:00:14,616 | INFO     | found 0 job(s) in 20 queues
[2026-05-13 21:00:25] 2026-05-14 01:00:14,616 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-13 21:00:25] 2026-05-14 01:00:14,616 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-13 21:00:25] 2026-05-14 01:00:18,089 | INFO     | [monitor] cgroup control has ended
[2026-05-13 21:00:25] 2026-05-14 01:00:20,068 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140200426968896)>', '<ExcThread(monitor, started 140200157402880)>']
[2026-05-13 21:00:25] 2026-05-14 01:00:20,694 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-13 21:00:25] 2026-05-14 01:00:20,694 | INFO     | [monitor] control thread has ended
[2026-05-13 21:00:25] 2026-05-14 01:00:25,094 | INFO     | all workflow threads have been joined
[2026-05-13 21:00:25] 2026-05-14 01:00:25,094 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-13 21:00:25] 2026-05-14 01:00:25,095 | INFO     | traces error code: 0
[2026-05-13 21:00:25] 2026-05-14 01:00:25,095 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-13 21:00:25] 2026-05-14 01:00:25,314 [wrapper] ==== pilot stdout END ====
[2026-05-13 21:00:25] 2026-05-14 01:00:25,319 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-13 21:00:25] 2026-05-14 01:00:25,322 [wrapper] pilotpid: 501896
[2026-05-13 21:00:25] 2026-05-14 01:00:25,325 [wrapper] Pilot exit status: 0
[2026-05-13 21:00:25] 2026-05-14 01:00:25,347 [wrapper] pandaids: 7138588041
[2026-05-13 21:00:25] 2026-05-14 01:00:25,491 [wrapper] cleanup supervisor_pilot  501902 501897
[2026-05-13 21:00:25] 2026-05-14 01:00:25,495 [wrapper] Test setup, not cleaning
[2026-05-13 21:00:25] 2026-05-14 01:00:25,498 [wrapper] apfmon messages muted
[2026-05-13 21:00:25] 2026-05-14 01:00:25,500 [wrapper] ==== wrapper stdout END ====
[2026-05-13 21:00:25] 2026-05-14 01:00:25,503 [wrapper] ==== wrapper stderr END ====
[2026-05-13 21:00:25]  *** Error codes and diagnostics ***
[2026-05-13 21:00:26]     "exeErrorCode": 65,
[2026-05-13 21:00:26]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-05-13 21:00:26]     "pilotErrorCode": 1305,
[2026-05-13 21:00:26]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-05-13 21:00:26]  *** Listing of results directory ***
[2026-05-13 21:00:26] total 107716
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas    683926 May 13 17:11 pilot3.tar.gz
[2026-05-13 21:00:26] -rwx------. 1 boincer umatlas     36281 May 13 17:13 runpilot2-wrapper.sh
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas      5631 May 13 17:13 queuedata.json
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas       100 May 13 20:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-13 21:00:26] -rwxr-xr-x. 1 boincer umatlas      7986 May 13 20:54 run_atlas
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas       105 May 13 20:54 job.xml
[2026-05-13 21:00:26] -rw-r--r--. 2 boincer umatlas 105953376 May 13 20:54 EVNT.50238157._000161.pool.root.1
[2026-05-13 21:00:26] -rw-r--r--. 2 boincer umatlas     15667 May 13 20:54 start_atlas.sh
[2026-05-13 21:00:26] drwxrwx--x. 2 boincer umatlas      4096 May 13 20:54 shared
[2026-05-13 21:00:26] -rw-r--r--. 2 boincer umatlas    697441 May 13 20:54 input.tar.gz
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas         0 May 13 20:54 boinc_lockfile
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas      2559 May 13 20:54 pandaJob.out
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas        57 May 13 20:54 setup.sh.local
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas    997597 May 13 20:54 agis_schedconf.cvmfs.json
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas   1502367 May 13 20:54 agis_ddmendpoints.agis.ALL.json
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas       432 May 13 20:55 workernode_map.json
[2026-05-13 21:00:26] drwx------. 5 boincer umatlas      4096 May 13 20:55 pilot3
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas      6565 May 13 20:56 init_data.xml
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas       482 May 13 20:57 boinc_task_state.xml
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas       983 May 13 20:57 memory_monitor_summary.json
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas     22518 May 13 20:57 log.50250192._014623.job.log.tgz.1
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas      7100 May 13 20:59 heartbeat_new.json
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas      7062 May 13 20:59 heartbeat.json
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas        95 May 13 21:00 pilot_heartbeat.json
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas      8192 May 13 21:00 boinc_mmap_file
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas      4822 May 13 21:00 pilotlog.txt
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas        23 May 13 21:00 wrapper_checkpoint.txt
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas     87918 May 13 21:00 log.50250192._014623.job.log.1
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas       188 May 13 21:00 output.list
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas       410 May 13 21:00 runtime_log
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas    133120 May 13 21:00 result.tar.gz
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas      8796 May 13 21:00 runtime_log.err
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas       636 May 13 21:00 e9899c83755b.diag
[2026-05-13 21:00:26] -rw-r--r--. 1 boincer umatlas     21917 May 13 21:00 stderr.txt
[2026-05-13 21:00:26] No HITS result produced
[2026-05-13 21:00:26]  *** Contents of shared directory: ***
[2026-05-13 21:00:26] total 104304
[2026-05-13 21:00:26] -rw-r--r--. 2 boincer umatlas 105953376 May 13 20:54 ATLAS.root_0
[2026-05-13 21:00:26] -rw-r--r--. 2 boincer umatlas     15667 May 13 20:54 start_atlas.sh
[2026-05-13 21:00:26] -rw-r--r--. 2 boincer umatlas    697441 May 13 20:54 input.tar.gz
[2026-05-13 21:00:26] -rw-------. 1 boincer umatlas    133120 May 13 21:00 result.tar.gz
21:00:27 (491576): run_atlas exited; CPU time 38.739554
21:00:27 (491576): called boinc_finish(0)

</stderr_txt>
]]>

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