Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:11:54 (2892759): wrapper (7.7.26015): starting
21:11:54 (2892759): wrapper: running run_atlas (--nthreads 12)
[2026-05-13 21:11:54] Arguments: --nthreads 12
[2026-05-13 21:11:54] Threads: 12
[2026-05-13 21:11:54] Checking for CVMFS
[2026-05-13 21:11:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-13 21:11:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-13 21:11:54] Running cvmfs_config stat atlas.cern.ch
[2026-05-13 21:11:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-13 21:11:55] 2.13.3.0 9997 19407 236796 159503 2 1037 24829808 32935937 14805 16776704 0 60947730 99.403 89163647 30854 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-05-13 21:11:55] CVMFS is ok
[2026-05-13 21:11:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-13 21:11:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-13 21:11:55] Further information can be found at the LHC@home message board.
[2026-05-13 21:11:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-13 21:11:55] Checking for apptainer binary...
[2026-05-13 21:11:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-13 21:11:55] Running /usr/bin/apptainer --version
[2026-05-13 21:11:55] apptainer version 1.4.5-3.el9
[2026-05-13 21:11:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-13 21:11:55] c-4-11.aglt2.org
[2026-05-13 21:11:55] apptainer works
[2026-05-13 21:11:55] Set ATHENA_PROC_NUMBER=12
[2026-05-13 21:11:55] Set ATHENA_CORE_NUMBER=12
[2026-05-13 21:11:55] Starting ATLAS job with PandaID=7138652133
[2026-05-13 21:11:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-13 21:16:33]  *** The last 200 lines of the pilot log: ***
[2026-05-13 21:16:33] 2026-05-14 01:15:50,722 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-13 21:16:33] 2026-05-14 01:15:50,727 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-13 21:16:33] 2026-05-14 01:15:50,728 | WARNING  | wrong length of table data, x=[1778721180.0], y=[1177.0] (must be same and length>=4)
[2026-05-13 21:16:33] 2026-05-14 01:15:50,728 | INFO     | could have reported an average CPU frequency of 2599 MHz (4 samples)
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | ..............................
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . Timing measurements:
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . get job = 0 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . initial setup = 14 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . payload setup = 19 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . stage-in = 0 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . payload execution = 59 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . stage-out = 0 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . log creation = 0 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | ..............................
[2026-05-13 21:16:33] 2026-05-14 01:15:50,730 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-13 21:16:33] 2026-05-14 01:15:50,730 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7138652133/pilotlog.txt
[2026-05-13 21:16:33] 2026-05-14 01:15:50,815 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-05-13 21:16:33] - Log from pilotlog.txt -
[2026-05-13 21:16:33] 2026-05-14 01:15:50,706 | INFO     | payload/TRF did not report the number of read events
[2026-05-13 21:16:33] 2026-05-14 01:15:50,721 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7138652133/memory_monitor_summary.json (trf name=prmon)
[2026-05-13 21:16:33] 2026-05-14 01:15:50,721 | INFO     | extracted standard info from prmon json
[2026-05-13 21:16:33] 2026-05-14 01:15:50,722 | INFO     | extracted standard memory fields from prmon json
[2026-05-13 21:16:33] 2026-05-14 01:15:50,722 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-13 21:16:33] 2026-05-14 01:15:50,727 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-13 21:16:33] 2026-05-14 01:15:50,728 | WARNING  | wrong length of table data, x=[1778721180.0], y=[1177.0] (must be same and length>=4)
[2026-05-13 21:16:33] 2026-05-14 01:15:50,728 | INFO     | could have reported an average CPU frequency of 2599 MHz (4 samples)
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | ..............................
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . Timing measurements:
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . get job = 0 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . initial setup = 14 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . payload setup = 19 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . stage-in = 0 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . payload execution = 59 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . stage-out = 0 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . log creation = 0 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | ..............................
[2026-05-13 21:16:33] 2026-05-14 01:15:50,730 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-13 21:16:33] 2026-05-14 01:15:50,730 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7138652133/pilotlog.txt
[2026-05-13 21:16:33] 2026-05-14 01:15:50,816 | WARNING  | 
[2026-05-13 21:16:33] [begin log extracts]
[2026-05-13 21:16:33] - Log from pilotlog.txt -
[2026-05-13 21:16:33] 2026-05-14 01:15:50,706 | INFO     | payload/TRF did not report the number of read events
[2026-05-13 21:16:33] 2026-05-14 01:15:50,721 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7138652133/memory_monitor_summary.json (trf name=prmon)
[2026-05-13 21:16:33] 2026-05-14 01:15:50,721 | INFO     | extracted standard info from prmon json
[2026-05-13 21:16:33] 2026-05-14 01:15:50,722 | INFO     | extracted standard memory fields from prmon json
[2026-05-13 21:16:33] 2026-05-14 01:15:50,722 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-13 21:16:33] 2026-05-14 01:15:50,727 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-13 21:16:33] 2026-05-14 01:15:50,728 | WARNING  | wrong length of table data, x=[1778721180.0], y=[1177.0] (must be same and length>=4)
[2026-05-13 21:16:33] 2026-05-14 01:15:50,728 | INFO     | could have reported an average CPU frequency of 2599 MHz (4 samples)
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | ..............................
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . Timing measurements:
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . get job = 0 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . initial setup = 14 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . payload setup = 19 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . stage-in = 0 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . payload execution = 59 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . stage-out = 0 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | . log creation = 0 s
[2026-05-13 21:16:33] 2026-05-14 01:15:50,729 | INFO     | ..............................
[2026-05-13 21:16:33] 2026-05-14 01:15:50,730 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-13 21:16:33] 2026-05-14 01:15:50,730 | INFO     | executing command: tail -n 20 /tmp/boinchome/slots/0/PanDA_Pilot-7138652133/pilotlog.txt
[2026-05-13 21:16:33] [end log extracts]
[2026-05-13 21:16:33] 2026-05-14 01:15:50,816 | WARNING  | pilot_error_code(s) = [1305] (will report primary/first error code)
[2026-05-13 21:16:33] 2026-05-14 01:15:50,817 | WARNING  | pilot_error_diag(s) = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero retu
[2026-05-13 21:16:33] 2026-05-14 01:15:51,020 | INFO     | 
[2026-05-13 21:16:33] 2026-05-14 01:15:51,020 | INFO     | job summary report
[2026-05-13 21:16:33] 2026-05-14 01:15:51,020 | INFO     | --------------------------------------------------
[2026-05-13 21:16:33] 2026-05-14 01:15:51,020 | INFO     | PanDA job id: 7138652133
[2026-05-13 21:16:33] 2026-05-14 01:15:51,021 | INFO     | task id: 50250192
[2026-05-13 21:16:33] 2026-05-14 01:15:51,021 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-05-14 01:13:41,900 CRITICAL Transform executor raised TransformValidationExceptio
[2026-05-13 21:16:33] 2026-05-14 01:15:51,021 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-13 21:16:33] 2026-05-14 01:15:51,021 | INFO     | pilot state: failed 
[2026-05-13 21:16:33] 2026-05-14 01:15:51,021 | INFO     | transexitcode: 65
[2026-05-13 21:16:33] 2026-05-14 01:15:51,021 | INFO     | exeerrorcode: 65
[2026-05-13 21:16:33] 2026-05-14 01:15:51,021 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-05-13 21:16:33] 2026-05-14 01:15:51,021 | INFO     | exitcode: 65
[2026-05-13 21:16:33] 2026-05-14 01:15:51,022 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-05-13 21:16:33] 2026-05-14 01:15:51,022 | INFO     | cpuconsumptiontime: 28 s
[2026-05-13 21:16:33] 2026-05-14 01:15:51,022 | INFO     | nevents: 0
[2026-05-13 21:16:33] 2026-05-14 01:15:51,022 | INFO     | neventsw: 0
[2026-05-13 21:16:33] 2026-05-14 01:15:51,022 | INFO     | pid: 2902232
[2026-05-13 21:16:33] 2026-05-14 01:15:51,022 | INFO     | pgrp: 2902232
[2026-05-13 21:16:33] 2026-05-14 01:15:51,027 | INFO     | corecount: 12
[2026-05-13 21:16:33] 2026-05-14 01:15:51,028 | INFO     | event service: False
[2026-05-13 21:16:33] 2026-05-14 01:15:51,028 | INFO     | sizes: {0: 2265650, 1: 2267479, 82: 2290886, 83: 2295241, 86: 2295241, 202: 2295407}
[2026-05-13 21:16:33] 2026-05-14 01:15:51,028 | INFO     | --------------------------------------------------
[2026-05-13 21:16:33] 2026-05-14 01:15:51,028 | INFO     | 
[2026-05-13 21:16:33] 2026-05-14 01:15:51,028 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-05-13 21:16:33] 2026-05-14 01:15:51,081 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,082 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,082 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,082 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,082 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,082 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,082 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,082 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,082 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,082 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,082 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,083 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,083 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,083 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,083 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,083 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,083 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,083 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-13 21:16:33] 2026-05-14 01:15:51,083 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,083 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-13 21:16:33] 2026-05-14 01:15:51,084 | INFO     | job 7138652133 has completed (purged errors)
[2026-05-13 21:16:33] 2026-05-14 01:15:51,084 | INFO     | overall cleanup function is called
[2026-05-13 21:16:33] 2026-05-14 01:15:51,642 | INFO     | PID=2896537 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-13 21:16:33] 2026-05-14 01:15:51,643 | INFO     | .. there are 20 such processes running
[2026-05-13 21:16:33] 2026-05-14 01:15:52,091 | INFO     | --- collectZombieJob: --- 10, [2902232]
[2026-05-13 21:16:33] 2026-05-14 01:15:52,092 | INFO     | zombie collector waiting for pid 2902232
[2026-05-13 21:16:33] 2026-05-14 01:15:52,092 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-13 21:16:33] 2026-05-14 01:15:52,092 | INFO     | collected zombie processes
[2026-05-13 21:16:33] 2026-05-14 01:15:52,092 | INFO     | will attempt to kill all subprocesses of pid=2902232
[2026-05-13 21:16:33] 2026-05-14 01:15:52,469 | INFO     | process IDs to be killed: [2902232] (in reverse order)
[2026-05-13 21:16:33] 2026-05-14 01:15:52,716 | WARNING  | found no corresponding commands to process id(s)
[2026-05-13 21:16:33] 2026-05-14 01:15:52,717 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-13 21:16:33] 2026-05-14 01:15:52,729 | INFO     | did not find any defunct processes belonging to 2902232
[2026-05-13 21:16:33] 2026-05-14 01:15:52,742 | INFO     | did not find any defunct processes belonging to 2902232
[2026-05-13 21:16:33] 2026-05-14 01:15:52,742 | INFO     | Ready for new job
[2026-05-13 21:16:33] 2026-05-14 01:15:52,744 | INFO     | ***************************************
[2026-05-13 21:16:33] 2026-05-14 01:15:52,744 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-13 21:16:33] 2026-05-14 01:15:52,744 | INFO     | ***************************************
[2026-05-13 21:16:33] 2026-05-14 01:15:52,745 | INFO     | 
[2026-05-13 21:16:33] 2026-05-14 01:15:52,747 | INFO     | architecture information:
[2026-05-13 21:16:33] 2026-05-14 01:15:52,747 | INFO     | executing command: cat /etc/os-release
[2026-05-13 21:16:33] 2026-05-14 01:15:52,766 | INFO     | cat /etc/os-release:
[2026-05-13 21:16:33] NAME="CentOS Linux"
[2026-05-13 21:16:33] VERSION="7 (Core)"
[2026-05-13 21:16:33] ID="centos"
[2026-05-13 21:16:33] ID_LIKE="rhel fedora"
[2026-05-13 21:16:33] VERSION_ID="7"
[2026-05-13 21:16:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-13 21:16:33] ANSI_COLOR="0;31"
[2026-05-13 21:16:33] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-13 21:16:33] HOME_URL="https://www.centos.org/"
[2026-05-13 21:16:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-13 21:16:33] 
[2026-05-13 21:16:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-13 21:16:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-13 21:16:33] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-13 21:16:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-13 21:16:33] 
[2026-05-13 21:16:33] 2026-05-14 01:15:52,767 | INFO     | ***************************************
[2026-05-13 21:16:33] 2026-05-14 01:15:53,269 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-05-13 21:16:33] 2026-05-14 01:15:53,286 | INFO     | sufficient remaining disk space (76814483456 B)
[2026-05-13 21:16:33] 2026-05-14 01:15:53,286 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-13 21:16:33] 2026-05-14 01:15:53,286 | INFO     | current server update state: UPDATING_FINAL
[2026-05-13 21:16:33] 2026-05-14 01:15:53,287 | INFO     | update_server=False
[2026-05-13 21:16:33] 2026-05-14 01:15:53,287 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-13 21:16:33] 2026-05-14 01:15:53,287 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-13 21:16:33] 2026-05-14 01:15:53,287 | INFO     | aborting loop
[2026-05-13 21:16:33] 2026-05-14 01:15:53,287 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-13 21:16:33] 2026-05-14 01:15:53,593 | INFO     | all payload control threads have been joined
[2026-05-13 21:16:33] 2026-05-14 01:15:53,889 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-13 21:16:33] 2026-05-14 01:15:53,931 | INFO     | all data control threads have been joined
[2026-05-13 21:16:33] 2026-05-14 01:15:54,010 | INFO     | all job control threads have been joined
[2026-05-13 21:16:33] 2026-05-14 01:15:54,298 | INFO     | [job] retrieve thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:54,299 | INFO     | [job] job monitor thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:54,397 | INFO     | [payload] failed_post thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:54,599 | INFO     | [payload] control thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:54,629 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:54,937 | INFO     | [data] control thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:54,989 | INFO     | [job] validate thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:55,017 | INFO     | [job] control thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:55,190 | INFO     | [job] create_data_payload thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:55,263 | INFO     | [payload] validate_post thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:55,293 | INFO     | [data] copytool_out thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:55,544 | INFO     | [payload] execute_payloads thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:55,679 | INFO     | [payload] validate_pre thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:55,763 | INFO     | [data] copytool_in thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:56,036 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-13 21:16:33] 2026-05-14 01:15:57,042 | INFO     | [job] queue monitor thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:15:57,898 | INFO     | [data] queue_monitor thread has finished
[2026-05-13 21:16:33] 2026-05-14 01:16:24,232 | INFO     | PID=2896537 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-05-13 21:16:33] 2026-05-14 01:16:24,233 | INFO     | .. there are 20 such processes running
[2026-05-13 21:16:33] 2026-05-14 01:16:24,235 | INFO     | found 0 job(s) in 20 queues
[2026-05-13 21:16:33] 2026-05-14 01:16:24,235 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-13 21:16:33] 2026-05-14 01:16:24,235 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-13 21:16:33] 2026-05-14 01:16:27,212 | INFO     | [monitor] cgroup control has ended
[2026-05-13 21:16:33] 2026-05-14 01:16:28,223 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139752529827648)>', '<ExcThread(monitor, started 139752187619072)>']
[2026-05-13 21:16:33] 2026-05-14 01:16:28,259 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-13 21:16:33] 2026-05-14 01:16:28,260 | INFO     | [monitor] control thread has ended
[2026-05-13 21:16:33] 2026-05-14 01:16:33,249 | INFO     | all workflow threads have been joined
[2026-05-13 21:16:33] 2026-05-14 01:16:33,250 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-13 21:16:33] 2026-05-14 01:16:33,250 | INFO     | traces error code: 0
[2026-05-13 21:16:33] 2026-05-14 01:16:33,250 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-13 21:16:33] 2026-05-14 01:16:33,475 [wrapper] ==== pilot stdout END ====
[2026-05-13 21:16:33] 2026-05-14 01:16:33,479 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-13 21:16:33] 2026-05-14 01:16:33,487 [wrapper] pilotpid: 2896537
[2026-05-13 21:16:33] 2026-05-14 01:16:33,493 [wrapper] Pilot exit status: 0
[2026-05-13 21:16:33] 2026-05-14 01:16:33,573 [wrapper] pandaids: 7138652133
[2026-05-13 21:16:33] 2026-05-14 01:16:33,775 [wrapper] cleanup supervisor_pilot 2896543 2896538
[2026-05-13 21:16:33] 2026-05-14 01:16:33,779 [wrapper] Test setup, not cleaning
[2026-05-13 21:16:33] 2026-05-14 01:16:33,782 [wrapper] apfmon messages muted
[2026-05-13 21:16:33] 2026-05-14 01:16:33,786 [wrapper] ==== wrapper stdout END ====
[2026-05-13 21:16:33] 2026-05-14 01:16:33,789 [wrapper] ==== wrapper stderr END ====
[2026-05-13 21:16:33]  *** Error codes and diagnostics ***
[2026-05-13 21:16:33]     "exeErrorCode": 65,
[2026-05-13 21:16:33]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-05-13 21:16:33]     "pilotErrorCode": 1305,
[2026-05-13 21:16:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-05-13 21:16:33]  *** Listing of results directory ***
[2026-05-13 21:16:33] total 103756
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas    683926 May 13 17:11 pilot3.tar.gz
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas      5631 May 13 18:03 queuedata.json
[2026-05-13 21:16:33] -rwx------. 1 boincer umatlas     36281 May 13 18:03 runpilot2-wrapper.sh
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas       100 May 13 21:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-13 21:16:33] -rwxr-xr-x. 1 boincer umatlas      7986 May 13 21:11 run_atlas
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas       105 May 13 21:11 job.xml
[2026-05-13 21:16:33] -rw-r--r--. 2 boincer umatlas 101914010 May 13 21:11 EVNT.50238157._000201.pool.root.1
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas      6567 May 13 21:11 init_data.xml
[2026-05-13 21:16:33] -rw-r--r--. 2 boincer umatlas     15667 May 13 21:11 start_atlas.sh
[2026-05-13 21:16:33] drwxrwx--x. 2 boincer umatlas      4096 May 13 21:11 shared
[2026-05-13 21:16:33] -rw-r--r--. 2 boincer umatlas    697442 May 13 21:11 input.tar.gz
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas         0 May 13 21:11 boinc_lockfile
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas      2560 May 13 21:11 pandaJob.out
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas        57 May 13 21:11 setup.sh.local
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas    997597 May 13 21:12 agis_schedconf.cvmfs.json
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas   1502367 May 13 21:12 agis_ddmendpoints.agis.ALL.json
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas       433 May 13 21:12 workernode_map.json
[2026-05-13 21:16:33] drwx------. 5 boincer umatlas      4096 May 13 21:12 pilot3
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas       482 May 13 21:13 boinc_task_state.xml
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas       983 May 13 21:13 memory_monitor_summary.json
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas     21585 May 13 21:13 log.50250192._017046.job.log.tgz.1
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas      7104 May 13 21:15 heartbeat_new.json
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas      7066 May 13 21:15 heartbeat.json
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas        95 May 13 21:16 pilot_heartbeat.json
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas        23 May 13 21:16 wrapper_checkpoint.txt
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas      8192 May 13 21:16 boinc_mmap_file
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas      4823 May 13 21:16 pilotlog.txt
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas     84163 May 13 21:16 log.50250192._017046.job.log.1
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas       188 May 13 21:16 output.list
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas       410 May 13 21:16 runtime_log
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas    122880 May 13 21:16 result.tar.gz
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas      8803 May 13 21:16 runtime_log.err
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas       637 May 13 21:16 f542f66e67e2.diag
[2026-05-13 21:16:33] -rw-r--r--. 1 boincer umatlas     21920 May 13 21:16 stderr.txt
[2026-05-13 21:16:33] No HITS result produced
[2026-05-13 21:16:33]  *** Contents of shared directory: ***
[2026-05-13 21:16:33] total 100348
[2026-05-13 21:16:33] -rw-r--r--. 2 boincer umatlas 101914010 May 13 21:11 ATLAS.root_0
[2026-05-13 21:16:33] -rw-r--r--. 2 boincer umatlas     15667 May 13 21:11 start_atlas.sh
[2026-05-13 21:16:33] -rw-r--r--. 2 boincer umatlas    697442 May 13 21:11 input.tar.gz
[2026-05-13 21:16:33] -rw-------. 1 boincer umatlas    122880 May 13 21:16 result.tar.gz
21:16:35 (2892759): run_atlas exited; CPU time 33.623004
21:16:35 (2892759): called boinc_finish(0)

</stderr_txt>
]]>

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