Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:43:25 (21407): wrapper (7.7.26015): starting
13:43:25 (21407): wrapper: running run_atlas (--nthreads 8)
[2026-05-13 13:43:25] Arguments: --nthreads 8
[2026-05-13 13:43:25] Threads: 8
[2026-05-13 13:43:25] Checking for CVMFS
[2026-05-13 13:43:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-13 13:43:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-13 13:43:29] Running cvmfs_config stat atlas.cern.ch
[2026-05-13 13:43:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-13 13:43:31] 2.11.2.0 19079 40014 100288 159479 1 241 18101999 25165825 540 130560 0 32064258 99.940 7998131 5529 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-05-13 13:43:31] CVMFS is ok
[2026-05-13 13:43:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-13 13:43:31] Checking for apptainer binary...
[2026-05-13 13:43:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-13 13:43:31] Running /usr/bin/apptainer --version
[2026-05-13 13:43:31] apptainer version 1.3.2-1.el7
[2026-05-13 13:43:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-13 13:43:39] cg-vwn478.simple-grid.lan
[2026-05-13 13:43:39] apptainer works
[2026-05-13 13:43:39] Set ATHENA_PROC_NUMBER=8
[2026-05-13 13:43:39] Set ATHENA_CORE_NUMBER=8
[2026-05-13 13:43:39] Starting ATLAS job with PandaID=7138067314
[2026-05-13 13:43:39] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-13 14:00:13]  *** The last 200 lines of the pilot log: ***
[2026-05-13 14:00:13] 2026-05-13 11:59:31,230 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | WARNING  | wrong length of table data, x=[1778673394.0], y=[2032.0] (must be same and length>=4)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | could have reported an average CPU frequency of 2249 MHz (4 samples)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | ..............................
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . Timing measurements:
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . get job = 0 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . initial setup = 124 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . payload setup = 224 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . stage-in = 0 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | . payload execution = 202 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | . stage-out = 0 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | . log creation = 0 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | ..............................
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/4/PanDA_Pilot-7138067314/pilotlog.txt
[2026-05-13 14:00:13] 2026-05-13 11:59:31,253 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-05-13 14:00:13] - Log from pilotlog.txt -
[2026-05-13 14:00:13] 2026-05-13 11:59:31,227 | INFO     | payload/TRF did not report the number of read events
[2026-05-13 14:00:13] 2026-05-13 11:59:31,229 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7138067314/memory_monitor_summary.json (trf name=prmon)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,229 | INFO     | extracted standard info from prmon json
[2026-05-13 14:00:13] 2026-05-13 11:59:31,230 | INFO     | extracted standard memory fields from prmon json
[2026-05-13 14:00:13] 2026-05-13 11:59:31,230 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-13 14:00:13] 2026-05-13 11:59:31,230 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | WARNING  | wrong length of table data, x=[1778673394.0], y=[2032.0] (must be same and length>=4)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | could have reported an average CPU frequency of 2249 MHz (4 samples)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | ..............................
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . Timing measurements:
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . get job = 0 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . initial setup = 124 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . payload setup = 224 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . stage-in = 0 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | . payload execution = 202 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | . stage-out = 0 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | . log creation = 0 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | ..............................
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/4/PanDA_Pilot-7138067314/pilotlog.txt
[2026-05-13 14:00:13] 2026-05-13 11:59:31,254 | WARNING  | 
[2026-05-13 14:00:13] [begin log extracts]
[2026-05-13 14:00:13] - Log from pilotlog.txt -
[2026-05-13 14:00:13] 2026-05-13 11:59:31,227 | INFO     | payload/TRF did not report the number of read events
[2026-05-13 14:00:13] 2026-05-13 11:59:31,229 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-7138067314/memory_monitor_summary.json (trf name=prmon)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,229 | INFO     | extracted standard info from prmon json
[2026-05-13 14:00:13] 2026-05-13 11:59:31,230 | INFO     | extracted standard memory fields from prmon json
[2026-05-13 14:00:13] 2026-05-13 11:59:31,230 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-13 14:00:13] 2026-05-13 11:59:31,230 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | WARNING  | wrong length of table data, x=[1778673394.0], y=[2032.0] (must be same and length>=4)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | could have reported an average CPU frequency of 2249 MHz (4 samples)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | ..............................
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . Timing measurements:
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . get job = 0 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . initial setup = 124 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . payload setup = 224 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,231 | INFO     | . stage-in = 0 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | . payload execution = 202 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | . stage-out = 0 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | . log creation = 0 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | ..............................
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-05-13 14:00:13] 2026-05-13 11:59:31,232 | INFO     | executing command: tail -n 20 /var/lib/boinc/slots/4/PanDA_Pilot-7138067314/pilotlog.txt
[2026-05-13 14:00:13] [end log extracts]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,254 | WARNING  | pilot_error_code(s) = [1305] (will report primary/first error code)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,255 | WARNING  | pilot_error_diag(s) = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero retu
[2026-05-13 14:00:13] 2026-05-13 11:59:31,367 | INFO     | 
[2026-05-13 14:00:13] 2026-05-13 11:59:31,367 | INFO     | job summary report
[2026-05-13 14:00:13] 2026-05-13 11:59:31,367 | INFO     | --------------------------------------------------
[2026-05-13 14:00:13] 2026-05-13 11:59:31,367 | INFO     | PanDA job id: 7138067314
[2026-05-13 14:00:13] 2026-05-13 11:59:31,367 | INFO     | task id: 50250192
[2026-05-13 14:00:13] 2026-05-13 11:59:31,367 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-05-13 11:57:22,906 CRITICAL Transform executor raised TransformValidationExceptio
[2026-05-13 14:00:13] 2026-05-13 11:59:31,367 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-13 14:00:13] 2026-05-13 11:59:31,368 | INFO     | pilot state: failed 
[2026-05-13 14:00:13] 2026-05-13 11:59:31,368 | INFO     | transexitcode: 65
[2026-05-13 14:00:13] 2026-05-13 11:59:31,368 | INFO     | exeerrorcode: 65
[2026-05-13 14:00:13] 2026-05-13 11:59:31,368 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (1)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,368 | INFO     | exitcode: 65
[2026-05-13 14:00:13] 2026-05-13 11:59:31,368 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (1)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,368 | INFO     | cpuconsumptiontime: 26 s
[2026-05-13 14:00:13] 2026-05-13 11:59:31,368 | INFO     | nevents: 0
[2026-05-13 14:00:13] 2026-05-13 11:59:31,368 | INFO     | neventsw: 0
[2026-05-13 14:00:13] 2026-05-13 11:59:31,368 | INFO     | pid: 29900
[2026-05-13 14:00:13] 2026-05-13 11:59:31,368 | INFO     | pgrp: 29900
[2026-05-13 14:00:13] 2026-05-13 11:59:31,369 | INFO     | corecount: 8
[2026-05-13 14:00:13] 2026-05-13 11:59:31,369 | INFO     | event service: False
[2026-05-13 14:00:13] 2026-05-13 11:59:31,369 | INFO     | sizes: {0: 2265043, 1: 2265728, 2: 2267557, 13: 2267557, 430: 2291063, 431: 2295358, 435: 2295542, 551: 2295736}
[2026-05-13 14:00:13] 2026-05-13 11:59:31,369 | INFO     | --------------------------------------------------
[2026-05-13 14:00:13] 2026-05-13 11:59:31,369 | INFO     | 
[2026-05-13 14:00:13] 2026-05-13 11:59:31,369 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-05-13 14:00:13] 2026-05-13 11:59:31,392 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,392 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,393 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,393 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,393 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,393 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,393 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,393 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,393 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,394 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,394 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,394 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,394 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,394 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,394 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,394 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,394 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,395 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,395 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-13 14:00:13] 2026-05-13 11:59:31,395 | INFO     | job 7138067314 has completed (purged errors)
[2026-05-13 14:00:13] 2026-05-13 11:59:31,395 | INFO     | overall cleanup function is called
[2026-05-13 14:00:13] 2026-05-13 11:59:31,869 | INFO     | PID=25402 has CPU usage=1.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-13 14:00:13] 2026-05-13 11:59:31,869 | INFO     | .. there are 2 such processes running
[2026-05-13 14:00:13] 2026-05-13 11:59:32,402 | INFO     | --- collectZombieJob: --- 10, [29900]
[2026-05-13 14:00:13] 2026-05-13 11:59:32,402 | INFO     | zombie collector waiting for pid 29900
[2026-05-13 14:00:13] 2026-05-13 11:59:32,402 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-13 14:00:13] 2026-05-13 11:59:32,402 | INFO     | collected zombie processes
[2026-05-13 14:00:13] 2026-05-13 11:59:32,402 | INFO     | will attempt to kill all subprocesses of pid=29900
[2026-05-13 14:00:13] 2026-05-13 11:59:32,458 | INFO     | process IDs to be killed: [29900] (in reverse order)
[2026-05-13 14:00:13] 2026-05-13 11:59:32,503 | WARNING  | found no corresponding commands to process id(s)
[2026-05-13 14:00:13] 2026-05-13 11:59:32,503 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-13 14:00:13] 2026-05-13 11:59:32,505 | INFO     | did not find any defunct processes belonging to 29900
[2026-05-13 14:00:13] 2026-05-13 11:59:32,507 | INFO     | did not find any defunct processes belonging to 29900
[2026-05-13 14:00:13] 2026-05-13 11:59:32,507 | INFO     | Ready for new job
[2026-05-13 14:00:13] 2026-05-13 11:59:32,508 | INFO     | ***************************************
[2026-05-13 14:00:13] 2026-05-13 11:59:32,508 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-13 14:00:13] 2026-05-13 11:59:32,508 | INFO     | ***************************************
[2026-05-13 14:00:13] 2026-05-13 11:59:32,509 | INFO     | 
[2026-05-13 14:00:13] 2026-05-13 11:59:32,509 | INFO     | pilot is running in a VM
[2026-05-13 14:00:13] 2026-05-13 11:59:32,509 | INFO     | architecture information:
[2026-05-13 14:00:13] 2026-05-13 11:59:32,510 | INFO     | executing command: cat /etc/os-release
[2026-05-13 14:00:13] 2026-05-13 11:59:32,525 | INFO     | cat /etc/os-release:
[2026-05-13 14:00:13] NAME="CentOS Linux"
[2026-05-13 14:00:13] VERSION="7 (Core)"
[2026-05-13 14:00:13] ID="centos"
[2026-05-13 14:00:13] ID_LIKE="rhel fedora"
[2026-05-13 14:00:13] VERSION_ID="7"
[2026-05-13 14:00:13] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-13 14:00:13] ANSI_COLOR="0;31"
[2026-05-13 14:00:13] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-13 14:00:13] HOME_URL="https://www.centos.org/"
[2026-05-13 14:00:13] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-13 14:00:13] 
[2026-05-13 14:00:13] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-13 14:00:13] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-13 14:00:13] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-13 14:00:13] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-13 14:00:13] 
[2026-05-13 14:00:13] 2026-05-13 11:59:32,525 | INFO     | ***************************************
[2026-05-13 14:00:13] 2026-05-13 11:59:33,028 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-05-13 14:00:13] 2026-05-13 11:59:33,051 | INFO     | sufficient remaining disk space (498230886400 B)
[2026-05-13 14:00:13] 2026-05-13 11:59:33,052 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-13 14:00:13] 2026-05-13 11:59:33,052 | INFO     | current server update state: UPDATING_FINAL
[2026-05-13 14:00:13] 2026-05-13 11:59:33,052 | INFO     | update_server=False
[2026-05-13 14:00:13] 2026-05-13 11:59:33,052 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-13 14:00:13] 2026-05-13 11:59:33,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-13 14:00:13] 2026-05-13 11:59:33,053 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-13 14:00:13] 2026-05-13 11:59:33,053 | INFO     | aborting loop
[2026-05-13 14:00:13] 2026-05-13 11:59:33,053 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-13 14:00:13] 2026-05-13 11:59:33,684 | INFO     | all payload control threads have been joined
[2026-05-13 14:00:13] 2026-05-13 11:59:33,702 | INFO     | all data control threads have been joined
[2026-05-13 14:00:13] 2026-05-13 11:59:34,053 | INFO     | [job] retrieve thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:34,058 | INFO     | [job] job monitor thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:34,058 | INFO     | [job] queue monitor thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:34,100 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-13 14:00:13] 2026-05-13 11:59:34,183 | INFO     | [job] create_data_payload thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:34,210 | INFO     | all job control threads have been joined
[2026-05-13 14:00:13] 2026-05-13 11:59:34,501 | INFO     | [payload] validate_post thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:34,553 | INFO     | [payload] execute_payloads thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:34,624 | INFO     | [payload] validate_pre thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:34,691 | INFO     | [payload] control thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:34,708 | INFO     | [data] control thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:34,734 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:35,059 | INFO     | [data] copytool_out thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:35,217 | INFO     | [job] control thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:35,286 | INFO     | [payload] failed_post thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:35,335 | INFO     | [data] copytool_in thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:35,401 | INFO     | [job] validate thread has finished
[2026-05-13 14:00:13] 2026-05-13 11:59:38,106 | INFO     | [data] queue_monitor thread has finished
[2026-05-13 14:00:13] 2026-05-13 12:00:04,061 | INFO     | PID=25402 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.22-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-13 14:00:13] 2026-05-13 12:00:04,061 | INFO     | .. there are 2 such processes running
[2026-05-13 14:00:13] 2026-05-13 12:00:04,062 | INFO     | found 0 job(s) in 20 queues
[2026-05-13 14:00:13] 2026-05-13 12:00:04,062 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-13 14:00:13] 2026-05-13 12:00:04,062 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-13 14:00:13] 2026-05-13 12:00:06,915 | INFO     | [monitor] cgroup control has ended
[2026-05-13 14:00:13] 2026-05-13 12:00:08,171 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139930101499712)>', '<ExcThread(monitor, started 139929212409600)>']
[2026-05-13 14:00:13] 2026-05-13 12:00:09,085 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-13 14:00:13] 2026-05-13 12:00:09,085 | INFO     | [monitor] control thread has ended
[2026-05-13 14:00:13] 2026-05-13 12:00:13,196 | INFO     | all workflow threads have been joined
[2026-05-13 14:00:13] 2026-05-13 12:00:13,197 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-13 14:00:13] 2026-05-13 12:00:13,197 | INFO     | traces error code: 0
[2026-05-13 14:00:13] 2026-05-13 12:00:13,197 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-13 14:00:13] 2026-05-13 12:00:13,351 [wrapper] ==== pilot stdout END ====
[2026-05-13 14:00:13] 2026-05-13 12:00:13,355 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-13 14:00:13] 2026-05-13 12:00:13,358 [wrapper] pilotpid: 25402
[2026-05-13 14:00:13] 2026-05-13 12:00:13,360 [wrapper] Pilot exit status: 0
[2026-05-13 14:00:13] 2026-05-13 12:00:13,378 [wrapper] pandaids: 7138067314
[2026-05-13 14:00:13] 2026-05-13 12:00:13,411 [wrapper] cleanup supervisor_pilot 25408 25403
[2026-05-13 14:00:13] 2026-05-13 12:00:13,437 [wrapper] Test setup, not cleaning
[2026-05-13 14:00:13] 2026-05-13 12:00:13,440 [wrapper] apfmon messages muted
[2026-05-13 14:00:13] 2026-05-13 12:00:13,443 [wrapper] ==== wrapper stdout END ====
[2026-05-13 14:00:13] 2026-05-13 12:00:13,456 [wrapper] ==== wrapper stderr END ====
[2026-05-13 14:00:13]  *** Error codes and diagnostics ***
[2026-05-13 14:00:13]     "exeErrorCode": 65,
[2026-05-13 14:00:13]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
[2026-05-13 14:00:13]     "pilotErrorCode": 1305,
[2026-05-13 14:00:13]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
[2026-05-13 14:00:13]  *** Listing of results directory ***
[2026-05-13 14:00:13] total 104064
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc    683926 May 13 12:02 pilot3.tar.gz
[2026-05-13 14:00:13] -rwx------. 1 boinc boinc     36281 May 13 12:12 runpilot2-wrapper.sh
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc      5631 May 13 12:12 queuedata.json
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc       100 May 13 13:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-13 14:00:13] -rwxr-xr-x. 1 boinc boinc      7986 May 13 13:43 run_atlas
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc       105 May 13 13:43 job.xml
[2026-05-13 14:00:13] -rw-r--r--. 2 boinc boinc 102201926 May 13 13:43 EVNT.50238157._000233.pool.root.1
[2026-05-13 14:00:13] -rw-r--r--. 2 boinc boinc     15667 May 13 13:43 start_atlas.sh
[2026-05-13 14:00:13] drwxrwx--x. 2 boinc boinc        68 May 13 13:43 shared
[2026-05-13 14:00:13] -rw-r--r--. 2 boinc boinc    697434 May 13 13:43 input.tar.gz
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc      6306 May 13 13:43 init_data.xml
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc         0 May 13 13:43 boinc_lockfile
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc      2560 May 13 13:43 pandaJob.out
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc   1502367 May 13 13:48 agis_ddmendpoints.agis.ALL.json
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc       415 May 13 13:49 workernode_map.json
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc    997866 May 13 13:50 agis_schedconf.cvmfs.json
[2026-05-13 14:00:13] drwx------. 5 boinc boinc      4096 May 13 13:50 pilot3
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc       937 May 13 13:57 memory_monitor_summary.json
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc     23367 May 13 13:57 log.50250192._005825.job.log.tgz.1
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc       483 May 13 13:57 boinc_task_state.xml
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc        95 May 13 13:59 pilot_heartbeat.json
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc      7007 May 13 13:59 heartbeat_new.json
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc      6969 May 13 13:59 heartbeat.json
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc        23 May 13 13:59 wrapper_checkpoint.txt
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc      8192 May 13 13:59 boinc_mmap_file
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc      4883 May 13 14:00 pilotlog.txt
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc    105848 May 13 14:00 log.50250192._005825.job.log.1
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc       188 May 13 14:00 output.list
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc       410 May 13 14:00 runtime_log
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc    143360 May 13 14:00 result.tar.gz
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc      8285 May 13 14:00 runtime_log.err
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc       638 May 13 14:00 4e80b9e6e36a.diag
[2026-05-13 14:00:13] -rw-r--r--. 1 boinc boinc     21608 May 13 14:00 stderr.txt
[2026-05-13 14:00:13] No HITS result produced
[2026-05-13 14:00:13]  *** Contents of shared directory: ***
[2026-05-13 14:00:13] total 100648
[2026-05-13 14:00:13] -rw-r--r--. 2 boinc boinc 102201926 May 13 13:43 ATLAS.root_0
[2026-05-13 14:00:13] -rw-r--r--. 2 boinc boinc     15667 May 13 13:43 start_atlas.sh
[2026-05-13 14:00:13] -rw-r--r--. 2 boinc boinc    697434 May 13 13:43 input.tar.gz
[2026-05-13 14:00:13] -rw-------. 1 boinc boinc    143360 May 13 14:00 result.tar.gz
14:00:15 (21407): run_atlas exited; CPU time 38.859914
14:00:15 (21407): called boinc_finish(0)

</stderr_txt>
]]>

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