Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
11:37:52 (19372): wrapper (7.7.26015): starting
11:37:52 (19372): wrapper: running run_atlas (--nthreads 12)
[2026-05-04 11:37:52] Arguments: --nthreads 12
[2026-05-04 11:37:52] Threads: 12
[2026-05-04 11:37:52] Checking for CVMFS
[2026-05-04 11:37:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-05-04 11:37:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-05-04 11:37:52] Running cvmfs_config stat atlas.cern.ch
[2026-05-04 11:37:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-05-04 11:37:52] 2.11.2.0 2925 516831 91700 159206 1 1 16807417 20275200 1 130560 1 214875109 99.952 28723447 17338 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-05-04 11:37:52] CVMFS is ok
[2026-05-04 11:37:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-04 11:37:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-04 11:37:52] Further information can be found at the LHC@home message board.
[2026-05-04 11:37:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-04 11:37:52] Checking for apptainer binary...
[2026-05-04 11:37:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-05-04 11:37:52] Running /usr/bin/apptainer --version
[2026-05-04 11:37:52] apptainer version 1.3.2-1.el7
[2026-05-04 11:37:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-04 11:37:54] c-205-9.aglt2.org
[2026-05-04 11:37:54] apptainer works
[2026-05-04 11:37:54] Set ATHENA_PROC_NUMBER=12
[2026-05-04 11:37:54] Set ATHENA_CORE_NUMBER=12
[2026-05-04 11:37:54] Starting ATLAS job with PandaID=7128529834
[2026-05-04 11:37:54] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-04 12:40:29]  *** The last 200 lines of the pilot log: ***
[2026-05-04 12:40:29]  filetype=log
[2026-05-04 12:40:29]  guid=c2aa006b-93f4-408d-a164-39461c6f1fe0
[2026-05-04 12:40:29]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-05-04 12:40:29]  is_altstaged=None
[2026-05-04 12:40:29]  is_tar=False
[2026-05-04 12:40:29]  lfn=log.50010682._000198.job.log.tgz.1
[2026-05-04 12:40:29]  mtime=0
[2026-05-04 12:40:29]  protocol_id=None
[2026-05-04 12:40:29]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-05-04 12:40:29]  replicas=None
[2026-05-04 12:40:29]  scope=mc23_13p6TeV
[2026-05-04 12:40:29]  status=None
[2026-05-04 12:40:29]  status_code=0
[2026-05-04 12:40:29]  storage_token=
[2026-05-04 12:40:29]  surl=/tmp/boinchome/slots/0/PanDA_Pilot-7128529834/log.50010682._000198.job.log.tgz.1
[2026-05-04 12:40:29]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/45/log.50010682._000198.job.log.tgz.1
[2026-05-04 12:40:29]  workdir=None
[2026-05-04 12:40:29] ]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,610 | INFO     | transferring file log.50010682._000198.job.log.tgz.1 from /tmp/boinchome/slots/0/PanDA_Pilot-7128529834/log.50010682._000198.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-05-04 12:40:29] 2026-05-04 16:39:53,610 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/0/PanDA_Pilot-7128529834/log.50010682._000198.job.log.tgz.1 /tmp/boinchome/slots/0/log.50010682._000198.job
[2026-05-04 12:40:29] 2026-05-04 16:39:53,632 | INFO     | adding to output.list: log.50010682._000198.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/96/45/log.50010682._000198.job.log.tg
[2026-05-04 12:40:29] 2026-05-04 16:39:53,633 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-05-04 12:40:29] 2026-05-04 16:39:53,633 | INFO     | summary of transferred files:
[2026-05-04 12:40:29] 2026-05-04 16:39:53,633 | INFO     |  -- lfn=log.50010682._000198.job.log.tgz.1, status_code=0, status=transferred
[2026-05-04 12:40:29] 2026-05-04 16:39:53,633 | INFO     | stage-out finished correctly
[2026-05-04 12:40:29] 2026-05-04 16:39:53,714 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-05-04 12:40:29] 2026-05-04 16:39:53,792 | INFO     | job 7128529834 has state=finished
[2026-05-04 12:40:29] 2026-05-04 16:39:53,792 | INFO     | preparing for final server update for job 7128529834 in state='finished'
[2026-05-04 12:40:29] 2026-05-04 16:39:53,793 | INFO     | reading metadata from: /tmp/boinchome/slots/0/PanDA_Pilot-7128529834/jobReport.json
[2026-05-04 12:40:29] 2026-05-04 16:39:53,796 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/0/workernode_map.json
[2026-05-04 12:40:29] 2026-05-04 16:39:53,796 | INFO     | this job has now completed (state=finished)
[2026-05-04 12:40:29] 2026-05-04 16:39:53,796 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-05-04 12:40:29] 2026-05-04 16:39:53,797 | INFO     | log transfer has been attempted: DONE
[2026-05-04 12:40:29] 2026-05-04 16:39:53,797 | INFO     | job 7128529834 has finished - writing final server update
[2026-05-04 12:40:29] 2026-05-04 16:39:53,797 | INFO     | total number of processed events: 400 (read)
[2026-05-04 12:40:29] 2026-05-04 16:39:53,799 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7128529834/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 12:40:29] 2026-05-04 16:39:53,800 | INFO     | extracted standard info from prmon json
[2026-05-04 12:40:29] 2026-05-04 16:39:53,800 | INFO     | extracted standard memory fields from prmon json
[2026-05-04 12:40:29] 2026-05-04 16:39:53,800 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-04 12:40:29] 2026-05-04 16:39:53,800 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-04 12:40:29] 2026-05-04 16:39:53,801 | INFO     | fitting pss+swap vs Time
[2026-05-04 12:40:29] 2026-05-04 16:39:53,802 | INFO     | sum of square deviations: 46147842.0
[2026-05-04 12:40:29] 2026-05-04 16:39:53,802 | INFO     | sum of deviations: 873112763.9999999
[2026-05-04 12:40:29] 2026-05-04 16:39:53,802 | INFO     | mean x (centered): 0.0
[2026-05-04 12:40:29] 2026-05-04 16:39:53,802 | INFO     | mean y: 2988421.830188679
[2026-05-04 12:40:29] 2026-05-04 16:39:53,802 | INFO     | intersect: 2988421.830188679
[2026-05-04 12:40:29] 2026-05-04 16:39:53,802 | INFO     | chi2: 0.0008826931983079535
[2026-05-04 12:40:29] 2026-05-04 16:39:53,803 | INFO     | current memory leak: 18.92 B/s (using 53 data points, chi2=0.00)
[2026-05-04 12:40:29] 2026-05-04 16:39:53,803 | INFO     | could have reported an average CPU frequency of 1740 MHz (6 samples)
[2026-05-04 12:40:29] 2026-05-04 16:39:53,803 | INFO     | ..............................
[2026-05-04 12:40:29] 2026-05-04 16:39:53,803 | INFO     | . Timing measurements:
[2026-05-04 12:40:29] 2026-05-04 16:39:53,803 | INFO     | . get job = 0 s
[2026-05-04 12:40:29] 2026-05-04 16:39:53,803 | INFO     | . initial setup = 7 s
[2026-05-04 12:40:29] 2026-05-04 16:39:53,803 | INFO     | . payload setup = 14 s
[2026-05-04 12:40:29] 2026-05-04 16:39:53,803 | INFO     | . stage-in = 0 s
[2026-05-04 12:40:29] 2026-05-04 16:39:53,804 | INFO     | . payload execution = 3665 s
[2026-05-04 12:40:29] 2026-05-04 16:39:53,804 | INFO     | . stage-out = 0 s
[2026-05-04 12:40:29] 2026-05-04 16:39:53,804 | INFO     | . log creation = 0 s
[2026-05-04 12:40:29] 2026-05-04 16:39:53,804 | INFO     | ..............................
[2026-05-04 12:40:29] 2026-05-04 16:39:53,881 | INFO     | 
[2026-05-04 12:40:29] 2026-05-04 16:39:53,881 | INFO     | job summary report
[2026-05-04 12:40:29] 2026-05-04 16:39:53,881 | INFO     | --------------------------------------------------
[2026-05-04 12:40:29] 2026-05-04 16:39:53,881 | INFO     | PanDA job id: 7128529834
[2026-05-04 12:40:29] 2026-05-04 16:39:53,881 | INFO     | task id: 50010682
[2026-05-04 12:40:29] 2026-05-04 16:39:53,882 | INFO     | errors: (none)
[2026-05-04 12:40:29] 2026-05-04 16:39:53,882 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-04 12:40:29] 2026-05-04 16:39:53,882 | INFO     | pilot state: finished 
[2026-05-04 12:40:29] 2026-05-04 16:39:53,882 | INFO     | transexitcode: 0
[2026-05-04 12:40:29] 2026-05-04 16:39:53,882 | INFO     | exeerrorcode: 0
[2026-05-04 12:40:29] 2026-05-04 16:39:53,882 | INFO     | exeerrordiag: 
[2026-05-04 12:40:29] 2026-05-04 16:39:53,882 | INFO     | exitcode: 0
[2026-05-04 12:40:29] 2026-05-04 16:39:53,883 | INFO     | exitmsg: OK
[2026-05-04 12:40:29] 2026-05-04 16:39:53,883 | INFO     | cpuconsumptiontime: 39998 s
[2026-05-04 12:40:29] 2026-05-04 16:39:53,883 | INFO     | nevents: 400
[2026-05-04 12:40:29] 2026-05-04 16:39:53,883 | INFO     | neventsw: 0
[2026-05-04 12:40:29] 2026-05-04 16:39:53,883 | INFO     | pid: 27512
[2026-05-04 12:40:29] 2026-05-04 16:39:53,883 | INFO     | pgrp: 27512
[2026-05-04 12:40:29] 2026-05-04 16:39:53,884 | INFO     | corecount: 12
[2026-05-04 12:40:29] 2026-05-04 16:39:53,884 | INFO     | event service: False
[2026-05-04 12:40:29] 2026-05-04 16:39:53,884 | INFO     | sizes: {0: 2270638, 1: 2272240, 11: 2272240, 3683: 2298037, 3684: 2298036, 3686: 2307412}
[2026-05-04 12:40:29] 2026-05-04 16:39:53,884 | INFO     | --------------------------------------------------
[2026-05-04 12:40:29] 2026-05-04 16:39:53,884 | INFO     | 
[2026-05-04 12:40:29] 2026-05-04 16:39:53,884 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-05-04 12:40:29] 2026-05-04 16:39:53,907 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,907 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,907 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,907 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,908 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,908 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,908 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,908 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,908 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,908 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,909 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,909 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,909 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,909 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,909 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,909 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,910 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,910 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-04 12:40:29] 2026-05-04 16:39:53,910 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,910 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-04 12:40:29] 2026-05-04 16:39:53,910 | INFO     | job 7128529834 has completed (purged errors)
[2026-05-04 12:40:29] 2026-05-04 16:39:53,910 | INFO     | overall cleanup function is called
[2026-05-04 12:40:29] 2026-05-04 16:39:54,207 | WARNING  | process 27512 can no longer be monitored (due to stat problems) - aborting
[2026-05-04 12:40:29] 2026-05-04 16:39:54,281 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-05-04 12:40:29] 2026-05-04 16:39:54,281 | INFO     | reaping zombies for max 20 seconds
[2026-05-04 12:40:29] 2026-05-04 16:39:54,292 | INFO     | checking for looping job (in state=finished)
[2026-05-04 12:40:29] 2026-05-04 16:39:54,293 | INFO     | using looping job limit: 7200 s
[2026-05-04 12:40:29] 2026-05-04 16:39:54,369 | INFO     | number of running child processes to parent process 27512: 1
[2026-05-04 12:40:29] 2026-05-04 16:39:54,370 | INFO     | maximum number of monitored processes: 6
[2026-05-04 12:40:29] 2026-05-04 16:39:54,370 | INFO     | aborting job monitoring since job object (job id=7128529834) has expired
[2026-05-04 12:40:29] 2026-05-04 16:39:54,917 | INFO     | --- collectZombieJob: --- 10, [27512]
[2026-05-04 12:40:29] 2026-05-04 16:39:54,917 | INFO     | zombie collector waiting for pid 27512
[2026-05-04 12:40:29] 2026-05-04 16:39:54,917 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-04 12:40:29] 2026-05-04 16:39:54,917 | INFO     | collected zombie processes
[2026-05-04 12:40:29] 2026-05-04 16:39:54,918 | INFO     | will attempt to kill all subprocesses of pid=27512
[2026-05-04 12:40:29] 2026-05-04 16:39:54,994 | INFO     | process IDs to be killed: [27512] (in reverse order)
[2026-05-04 12:40:29] 2026-05-04 16:39:55,046 | WARNING  | found no corresponding commands to process id(s)
[2026-05-04 12:40:29] 2026-05-04 16:39:55,046 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-04 12:40:29] 2026-05-04 16:39:55,050 | INFO     | did not find any defunct processes belonging to 27512
[2026-05-04 12:40:29] 2026-05-04 16:39:55,053 | INFO     | did not find any defunct processes belonging to 27512
[2026-05-04 12:40:29] 2026-05-04 16:39:55,053 | INFO     | Ready for new job
[2026-05-04 12:40:29] 2026-05-04 16:39:55,054 | INFO     | ***************************************
[2026-05-04 12:40:29] 2026-05-04 16:39:55,054 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-04 12:40:29] 2026-05-04 16:39:55,054 | INFO     | ***************************************
[2026-05-04 12:40:29] 2026-05-04 16:39:55,055 | INFO     | 
[2026-05-04 12:40:29] 2026-05-04 16:39:55,055 | INFO     | architecture information:
[2026-05-04 12:40:29] 2026-05-04 16:39:55,056 | INFO     | executing command: cat /etc/os-release
[2026-05-04 12:40:29] 2026-05-04 16:39:55,071 | INFO     | cat /etc/os-release:
[2026-05-04 12:40:29] NAME="CentOS Linux"
[2026-05-04 12:40:29] VERSION="7 (Core)"
[2026-05-04 12:40:29] ID="centos"
[2026-05-04 12:40:29] ID_LIKE="rhel fedora"
[2026-05-04 12:40:29] VERSION_ID="7"
[2026-05-04 12:40:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-04 12:40:29] ANSI_COLOR="0;31"
[2026-05-04 12:40:29] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-04 12:40:29] HOME_URL="https://www.centos.org/"
[2026-05-04 12:40:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-04 12:40:29] 
[2026-05-04 12:40:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-04 12:40:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-04 12:40:29] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-04 12:40:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-04 12:40:29] 
[2026-05-04 12:40:29] 2026-05-04 16:39:55,072 | INFO     | ***************************************
[2026-05-04 12:40:29] 2026-05-04 16:39:55,573 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-05-04 12:40:29] 2026-05-04 16:39:55,588 | INFO     | sufficient remaining disk space (29298262016 B)
[2026-05-04 12:40:29] 2026-05-04 16:39:55,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-04 12:40:29] 2026-05-04 16:39:55,589 | INFO     | current server update state: UPDATING_FINAL
[2026-05-04 12:40:29] 2026-05-04 16:39:55,589 | INFO     | update_server=False
[2026-05-04 12:40:29] 2026-05-04 16:39:55,589 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-04 12:40:29] 2026-05-04 16:39:55,590 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-04 12:40:29] 2026-05-04 16:39:55,590 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-04 12:40:29] 2026-05-04 16:39:55,590 | INFO     | aborting loop
[2026-05-04 12:40:29] 2026-05-04 16:39:55,590 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-04 12:40:29] 2026-05-04 16:39:55,666 | INFO     | all data control threads have been joined
[2026-05-04 12:40:29] 2026-05-04 16:39:56,590 | INFO     | [job] retrieve thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:56,596 | INFO     | [job] job monitor thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:56,596 | INFO     | [job] queue monitor thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:56,629 | INFO     | all payload control threads have been joined
[2026-05-04 12:40:29] 2026-05-04 16:39:56,671 | INFO     | [data] control thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:56,672 | INFO     | [payload] failed_post thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:56,719 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-04 12:40:29] 2026-05-04 16:39:56,769 | INFO     | [job] create_data_payload thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:56,997 | INFO     | all job control threads have been joined
[2026-05-04 12:40:29] 2026-05-04 16:39:57,068 | INFO     | [data] copytool_in thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:57,074 | INFO     | [payload] validate_pre thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:57,256 | INFO     | [payload] validate_post thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:57,635 | INFO     | [payload] control thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:57,801 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:57,904 | INFO     | [payload] execute_payloads thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:58,004 | INFO     | [job] control thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:58,047 | INFO     | [job] validate thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:58,725 | INFO     | [data] copytool_out thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:39:59,596 | INFO     | [data] queue_monitor thread has finished
[2026-05-04 12:40:29] 2026-05-04 16:40:22,104 | INFO     | [monitor] cgroup control has ended
[2026-05-04 12:40:29] 2026-05-04 16:40:24,038 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140526436669248)>', '<ExcThread(monitor, started 140525994751744)>']
[2026-05-04 12:40:29] 2026-05-04 16:40:25,877 | INFO     | PID=23107 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-05-04 12:40:29] 2026-05-04 16:40:25,879 | INFO     | found 0 job(s) in 20 queues
[2026-05-04 12:40:29] 2026-05-04 16:40:25,879 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-04 12:40:29] 2026-05-04 16:40:25,879 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-04 12:40:29] 2026-05-04 16:40:25,879 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-04 12:40:29] 2026-05-04 16:40:25,879 | INFO     | [monitor] control thread has ended
[2026-05-04 12:40:29] 2026-05-04 16:40:29,047 | INFO     | all workflow threads have been joined
[2026-05-04 12:40:29] 2026-05-04 16:40:29,047 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-04 12:40:29] 2026-05-04 16:40:29,047 | INFO     | traces error code: 0
[2026-05-04 12:40:29] 2026-05-04 16:40:29,048 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-04 12:40:29] 2026-05-04 16:40:29,130 [wrapper] ==== pilot stdout END ====
[2026-05-04 12:40:29] 2026-05-04 16:40:29,133 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-04 12:40:29] 2026-05-04 16:40:29,137 [wrapper] pilotpid: 23107
[2026-05-04 12:40:29] 2026-05-04 16:40:29,140 [wrapper] Pilot exit status: 0
[2026-05-04 12:40:29] 2026-05-04 16:40:29,156 [wrapper] pandaids: 7128529834
[2026-05-04 12:40:29] 2026-05-04 16:40:29,195 [wrapper] cleanup supervisor_pilot 13796 23108
[2026-05-04 12:40:29] 2026-05-04 16:40:29,199 [wrapper] Test setup, not cleaning
[2026-05-04 12:40:29] 2026-05-04 16:40:29,203 [wrapper] apfmon messages muted
[2026-05-04 12:40:29] 2026-05-04 16:40:29,207 [wrapper] ==== wrapper stdout END ====
[2026-05-04 12:40:29] 2026-05-04 16:40:29,211 [wrapper] ==== wrapper stderr END ====
[2026-05-04 12:40:29]  *** Error codes and diagnostics ***
[2026-05-04 12:40:29]     "exeErrorCode": 0,
[2026-05-04 12:40:29]     "pilotErrorCode": 0,
[2026-05-04 12:40:29]  *** Listing of results directory ***
[2026-05-04 12:40:29] total 406244
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas    683926 May  4 02:55 pilot3.tar.gz
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas      5631 May  4 02:58 queuedata.json
[2026-05-04 12:40:29] -rwx------ 1 boincer umatlas     36322 May  4 02:59 runpilot2-wrapper.sh
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas       100 May  4 11:37 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-04 12:40:29] -rwxr-xr-x 1 boincer umatlas      7986 May  4 11:37 run_atlas
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas       105 May  4 11:37 job.xml
[2026-05-04 12:40:29] -rw-r--r-- 2 boincer umatlas 246605309 May  4 11:37 EVNT.50010680._000008.pool.root.1
[2026-05-04 12:40:29] -rw-r--r-- 2 boincer umatlas    697403 May  4 11:37 input.tar.gz
[2026-05-04 12:40:29] -rw-r--r-- 2 boincer umatlas     15667 May  4 11:37 start_atlas.sh
[2026-05-04 12:40:29] drwxrwx--x 2 boincer umatlas      4096 May  4 11:37 shared
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas         0 May  4 11:37 boinc_lockfile
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas      2561 May  4 11:37 pandaJob.out
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas        57 May  4 11:37 setup.sh.local
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas   1002539 May  4 11:38 agis_schedconf.cvmfs.json
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas   1505918 May  4 11:38 agis_ddmendpoints.agis.ALL.json
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas       444 May  4 11:38 workernode_map.json
[2026-05-04 12:40:29] drwx------ 5 boincer umatlas      4096 May  4 11:38 pilot3
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas      5868 May  4 12:37 init_data.xml
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas 163778497 May  4 12:39 HITS.50010682._000198.pool.root.1
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas       487 May  4 12:39 boinc_task_state.xml
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas      1045 May  4 12:39 memory_monitor_summary.json
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas    367569 May  4 12:39 log.50010682._000198.job.log.tgz.1
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas      6425 May  4 12:39 heartbeat_new.json
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas      6316 May  4 12:39 heartbeat.json
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas      8192 May  4 12:40 boinc_mmap_file
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas        27 May  4 12:40 wrapper_checkpoint.txt
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas        95 May  4 12:40 pilot_heartbeat.json
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas      4745 May  4 12:40 pilotlog.txt
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas    371773 May  4 12:40 log.50010682._000198.job.log.1
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas       357 May  4 12:40 output.list
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas       410 May  4 12:40 runtime_log
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas    757760 May  4 12:40 result.tar.gz
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas      8961 May  4 12:40 runtime_log.err
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas       658 May  4 12:40 43e73c7bbb90.diag
[2026-05-04 12:40:29] -rw-r--r-- 1 boincer umatlas     21155 May  4 12:40 stderr.txt
[2026-05-04 12:40:29] HITS file was successfully produced:
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas 163778497 May  4 12:39 shared/HITS.pool.root.1
[2026-05-04 12:40:29]  *** Contents of shared directory: ***
[2026-05-04 12:40:29] total 402212
[2026-05-04 12:40:29] -rw-r--r-- 2 boincer umatlas 246605309 May  4 11:37 ATLAS.root_0
[2026-05-04 12:40:29] -rw-r--r-- 2 boincer umatlas    697403 May  4 11:37 input.tar.gz
[2026-05-04 12:40:29] -rw-r--r-- 2 boincer umatlas     15667 May  4 11:37 start_atlas.sh
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas 163778497 May  4 12:39 HITS.pool.root.1
[2026-05-04 12:40:29] -rw------- 1 boincer umatlas    757760 May  4 12:40 result.tar.gz
12:40:31 (19372): run_atlas exited; CPU time 39979.373237
12:40:31 (19372): called boinc_finish(0)

</stderr_txt>
]]>

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