Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:04:08 (875753): wrapper (7.7.26015): starting
03:04:08 (875753): wrapper: running run_atlas (--nthreads 4)
[2026-05-05 03:04:08] Arguments: --nthreads 4
[2026-05-05 03:04:08] Threads: 4
[2026-05-05 03:04:08] Checking for CVMFS
[2026-05-05 03:04:08] No cvmfs_config command found, will try listing directly
[2026-05-05 03:04:08] CVMFS is ok
[2026-05-05 03:04:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-05-05 03:04:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-05-05 03:04:08] Further information can be found at the LHC@home message board.
[2026-05-05 03:04:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-05-05 03:04:08] Checking for apptainer binary...
[2026-05-05 03:04:08] which: no apptainer in ((null))
[2026-05-05 03:04:08] apptainer is not installed, using version from CVMFS
[2026-05-05 03:04:08] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-05-05 03:04:08] WARNING: Environment variable TMPDIR already has value [/var/lib/boinc/var/slot28/slots/3/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut06.grid.cesnet.cz
[2026-05-05 03:04:08] apptainer works
[2026-05-05 03:04:08] Set ATHENA_PROC_NUMBER=4
[2026-05-05 03:04:08] Set ATHENA_CORE_NUMBER=4
[2026-05-05 03:04:08] Starting ATLAS job with PandaID=7128670723
[2026-05-05 03:04:08] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc/var/slot28/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-05-05 05:27:42]  *** The last 200 lines of the pilot log: ***
[2026-05-05 05:27:42] 2026-05-05 03:26:38,150 | INFO     | log transfer has been attempted: DONE
[2026-05-05 05:27:42] 2026-05-05 03:26:38,150 | INFO     | job 7128670723 has finished - writing final server update
[2026-05-05 05:27:42] 2026-05-05 03:26:38,151 | WARNING  | failed to read HTCondor job classAd: [Errno 2] No such file or directory: '/scratch/condor/execute/dir_2779396/.job.ad'
[2026-05-05 05:27:42] 2026-05-05 03:26:38,151 | INFO     | total number of processed events: 400 (read)
[2026-05-05 05:27:42] 2026-05-05 03:26:38,163 | INFO     | using path: /var/lib/boinc/var/slot28/slots/3/PanDA_Pilot-7128670723/memory_monitor_summary.json (trf name=prmon)
[2026-05-05 05:27:42] 2026-05-05 03:26:38,164 | INFO     | extracted standard info from prmon json
[2026-05-05 05:27:42] 2026-05-05 03:26:38,164 | INFO     | extracted standard memory fields from prmon json
[2026-05-05 05:27:42] 2026-05-05 03:26:38,164 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-05-05 05:27:42] 2026-05-05 03:26:38,164 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-05-05 05:27:42] 2026-05-05 03:26:38,167 | INFO     | fitting pss+swap vs Time
[2026-05-05 05:27:42] 2026-05-05 03:26:38,168 | INFO     | sum of square deviations: 850825255.0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,168 | INFO     | sum of deviations: 10539623920.000004
[2026-05-05 05:27:42] 2026-05-05 03:26:38,169 | INFO     | mean x (centered): 0.0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,169 | INFO     | mean y: 2305629.5428571426
[2026-05-05 05:27:42] 2026-05-05 03:26:38,169 | INFO     | intersect: 2305629.5428571426
[2026-05-05 05:27:42] 2026-05-05 03:26:38,169 | INFO     | chi2: 2.129537054386961
[2026-05-05 05:27:42] 2026-05-05 03:26:38,169 | INFO     | sum of square deviations: 762879420.0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,170 | INFO     | sum of deviations: 18540884546.999996
[2026-05-05 05:27:42] 2026-05-05 03:26:38,170 | INFO     | mean x (centered): 0.0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,170 | INFO     | mean y: 2319071.111111111
[2026-05-05 05:27:42] 2026-05-05 03:26:38,170 | INFO     | intersect: 2319071.111111111
[2026-05-05 05:27:42] 2026-05-05 03:26:38,171 | INFO     | chi2: 1.3662664813570224
[2026-05-05 05:27:42] 2026-05-05 03:26:38,171 | INFO     | current chi2=1.3662664813570224 (change=35.84208931502555 %)
[2026-05-05 05:27:42] 2026-05-05 03:26:38,171 | INFO     | sum of square deviations: 681212772.5
[2026-05-05 05:27:42] 2026-05-05 03:26:38,172 | INFO     | sum of deviations: 17771420268.5
[2026-05-05 05:27:42] 2026-05-05 03:26:38,172 | INFO     | mean x (centered): 0.0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,172 | INFO     | mean y: 2317634.9153846153
[2026-05-05 05:27:42] 2026-05-05 03:26:38,172 | INFO     | intersect: 2317634.9153846153
[2026-05-05 05:27:42] 2026-05-05 03:26:38,172 | INFO     | chi2: 1.3676797366428377
[2026-05-05 05:27:42] 2026-05-05 03:26:38,172 | INFO     | current chi2=1.3676797366428377 (change=-0.10343921226930557 %)
[2026-05-05 05:27:42] 2026-05-05 03:26:38,173 | INFO     | right removable region: 129
[2026-05-05 05:27:42] 2026-05-05 03:26:38,173 | INFO     | sum of square deviations: 762879420.0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,174 | INFO     | sum of deviations: -7617925708.0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,174 | INFO     | mean x (centered): 0.0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,174 | INFO     | mean y: 2336548.777777778
[2026-05-05 05:27:42] 2026-05-05 03:26:38,174 | INFO     | intersect: 2336548.777777778
[2026-05-05 05:27:42] 2026-05-05 03:26:38,174 | INFO     | chi2: 0.7992097028651552
[2026-05-05 05:27:42] 2026-05-05 03:26:38,174 | INFO     | current chi2=0.7992097028651552 (change=62.47026079124849 %)
[2026-05-05 05:27:42] 2026-05-05 03:26:38,174 | INFO     | sum of square deviations: 681212772.5
[2026-05-05 05:27:42] 2026-05-05 03:26:38,175 | INFO     | sum of deviations: -6951151391.5
[2026-05-05 05:27:42] 2026-05-05 03:26:38,175 | INFO     | mean x (centered): 0.0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,175 | INFO     | mean y: 2335250.653846154
[2026-05-05 05:27:42] 2026-05-05 03:26:38,175 | INFO     | intersect: 2335250.653846154
[2026-05-05 05:27:42] 2026-05-05 03:26:38,176 | INFO     | chi2: 0.7949676272603923
[2026-05-05 05:27:42] 2026-05-05 03:26:38,176 | INFO     | current chi2=0.7949676272603923 (change=0.5307837967376013 %)
[2026-05-05 05:27:42] 2026-05-05 03:26:38,176 | INFO     | left removable region: 10
[2026-05-05 05:27:42] 2026-05-05 03:26:38,176 | INFO     | sum of square deviations: 522502820.0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,177 | INFO     | sum of deviations: 951051060.9999999
[2026-05-05 05:27:42] 2026-05-05 03:26:38,177 | INFO     | mean x (centered): 0.0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,177 | INFO     | mean y: 2350660.4789915965
[2026-05-05 05:27:42] 2026-05-05 03:26:38,177 | INFO     | intersect: 2350660.4789915965
[2026-05-05 05:27:42] 2026-05-05 03:26:38,177 | INFO     | chi2: 0.004080536961294981
[2026-05-05 05:27:42] 2026-05-05 03:26:38,178 | INFO     | current memory leak: 1.82 B/s (using 119 data points, chi2=0.00)
[2026-05-05 05:27:42] 2026-05-05 03:26:38,178 | INFO     | could have reported an average CPU frequency of 2620 MHz (8 samples)
[2026-05-05 05:27:42] 2026-05-05 03:26:38,178 | INFO     | ..............................
[2026-05-05 05:27:42] 2026-05-05 03:26:38,178 | INFO     | . Timing measurements:
[2026-05-05 05:27:42] 2026-05-05 03:26:38,178 | INFO     | . get job = 0 s
[2026-05-05 05:27:42] 2026-05-05 03:26:38,178 | INFO     | . initial setup = 5 s
[2026-05-05 05:27:42] 2026-05-05 03:26:38,178 | INFO     | . payload setup = 9 s
[2026-05-05 05:27:42] 2026-05-05 03:26:38,178 | INFO     | . stage-in = 0 s
[2026-05-05 05:27:42] 2026-05-05 03:26:38,179 | INFO     | . payload execution = 8501 s
[2026-05-05 05:27:42] 2026-05-05 03:26:38,179 | INFO     | . stage-out = 0 s
[2026-05-05 05:27:42] 2026-05-05 03:26:38,179 | INFO     | . log creation = 0 s
[2026-05-05 05:27:42] 2026-05-05 03:26:38,179 | INFO     | ..............................
[2026-05-05 05:27:42] 2026-05-05 03:26:38,275 | INFO     | 
[2026-05-05 05:27:42] 2026-05-05 03:26:38,276 | INFO     | job summary report
[2026-05-05 05:27:42] 2026-05-05 03:26:38,276 | INFO     | --------------------------------------------------
[2026-05-05 05:27:42] 2026-05-05 03:26:38,276 | INFO     | PanDA job id: 7128670723
[2026-05-05 05:27:42] 2026-05-05 03:26:38,276 | INFO     | task id: 50010700
[2026-05-05 05:27:42] 2026-05-05 03:26:38,276 | INFO     | errors: (none)
[2026-05-05 05:27:42] 2026-05-05 03:26:38,276 | INFO     | status: LOG_TRANSFER = DONE 
[2026-05-05 05:27:42] 2026-05-05 03:26:38,276 | INFO     | pilot state: finished 
[2026-05-05 05:27:42] 2026-05-05 03:26:38,276 | INFO     | transexitcode: 0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,276 | INFO     | exeerrorcode: 0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,276 | INFO     | exeerrordiag: 
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | exitcode: 0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | exitmsg: OK
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | cpuconsumptiontime: 32240 s
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | nevents: 400
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | neventsw: 0
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | pid: 884698
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | pgrp: 884698
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | corecount: 4
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | event service: False
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | sizes: {0: 2270355, 1: 2272184, 11: 2272184, 8515: 2300060, 8517: 2309080, 8520: 2309136, 8522: 2309458}
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | --------------------------------------------------
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | 
[2026-05-05 05:27:42] 2026-05-05 03:26:38,277 | INFO     | executing command: ls -lF /var/lib/boinc/var/slot28/slots/3
[2026-05-05 05:27:42] 2026-05-05 03:26:38,301 | INFO     | queue jobs had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,301 | INFO     | queue payloads had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,301 | INFO     | queue data_in had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,301 | INFO     | queue data_out had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,301 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,301 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,302 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,302 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,302 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,302 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,302 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,302 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,302 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,302 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,302 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,302 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,302 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,303 | INFO     | queue completed_jobids has 1 job(s)
[2026-05-05 05:27:42] 2026-05-05 03:26:38,303 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,303 | INFO     | queue messages had 0 job(s) [purged]
[2026-05-05 05:27:42] 2026-05-05 03:26:38,303 | INFO     | job 7128670723 has completed (purged errors)
[2026-05-05 05:27:42] 2026-05-05 03:26:38,303 | INFO     | overall cleanup function is called
[2026-05-05 05:27:42] 2026-05-05 03:26:39,310 | INFO     | --- collectZombieJob: --- 10, [884698]
[2026-05-05 05:27:42] 2026-05-05 03:26:39,310 | INFO     | zombie collector waiting for pid 884698
[2026-05-05 05:27:42] 2026-05-05 03:26:39,310 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-05-05 05:27:42] 2026-05-05 03:26:39,311 | INFO     | collected zombie processes
[2026-05-05 05:27:42] 2026-05-05 03:26:39,311 | INFO     | will attempt to kill all subprocesses of pid=884698
[2026-05-05 05:27:42] 2026-05-05 03:26:39,604 | INFO     | process IDs to be killed: [884698] (in reverse order)
[2026-05-05 05:27:42] 2026-05-05 03:26:39,719 | WARNING  | found no corresponding commands to process id(s)
[2026-05-05 05:27:42] 2026-05-05 03:26:39,720 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-05-05 05:27:42] 2026-05-05 03:26:39,731 | INFO     | did not find any defunct processes belonging to 884698
[2026-05-05 05:27:42] 2026-05-05 03:26:39,742 | INFO     | did not find any defunct processes belonging to 884698
[2026-05-05 05:27:42] 2026-05-05 03:26:39,742 | INFO     | Ready for new job
[2026-05-05 05:27:42] 2026-05-05 03:26:39,744 | INFO     | ***************************************
[2026-05-05 05:27:42] 2026-05-05 03:26:39,744 | INFO     | ***  PanDA Pilot version 3.13.0.23  ***
[2026-05-05 05:27:42] 2026-05-05 03:26:39,744 | INFO     | ***************************************
[2026-05-05 05:27:42] 2026-05-05 03:26:39,744 | INFO     | 
[2026-05-05 05:27:42] 2026-05-05 03:26:39,748 | INFO     | architecture information:
[2026-05-05 05:27:42] 2026-05-05 03:26:39,749 | INFO     | executing command: cat /etc/os-release
[2026-05-05 05:27:42] 2026-05-05 03:26:39,764 | INFO     | cat /etc/os-release:
[2026-05-05 05:27:42] NAME="CentOS Linux"
[2026-05-05 05:27:42] VERSION="7 (Core)"
[2026-05-05 05:27:42] ID="centos"
[2026-05-05 05:27:42] ID_LIKE="rhel fedora"
[2026-05-05 05:27:42] VERSION_ID="7"
[2026-05-05 05:27:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-05-05 05:27:42] ANSI_COLOR="0;31"
[2026-05-05 05:27:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-05-05 05:27:42] HOME_URL="https://www.centos.org/"
[2026-05-05 05:27:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-05-05 05:27:42] 
[2026-05-05 05:27:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-05-05 05:27:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-05-05 05:27:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-05-05 05:27:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-05-05 05:27:42] 
[2026-05-05 05:27:42] 2026-05-05 03:26:39,765 | INFO     | ***************************************
[2026-05-05 05:27:42] 2026-05-05 03:26:40,267 | INFO     | executing command: df -mP /var/lib/boinc/var/slot28/slots/3
[2026-05-05 05:27:42] 2026-05-05 03:26:40,284 | INFO     | sufficient remaining disk space (40145780736 B)
[2026-05-05 05:27:42] 2026-05-05 03:26:40,284 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-05-05 05:27:42] 2026-05-05 03:26:40,284 | INFO     | current server update state: UPDATING_FINAL
[2026-05-05 05:27:42] 2026-05-05 03:26:40,285 | INFO     | update_server=False
[2026-05-05 05:27:42] 2026-05-05 03:26:40,285 | WARNING  | proceed_with_getjob() returned False &#226;&#128;&#148; stopping retrieve loop (pilot will end)
[2026-05-05 05:27:42] 2026-05-05 03:26:40,376 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-05-05 05:27:42] 2026-05-05 03:26:40,376 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-05-05 05:27:42] 2026-05-05 03:26:40,377 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-05-05 05:27:42] 2026-05-05 03:26:40,377 | INFO     | will abort loop
[2026-05-05 05:27:42] 2026-05-05 03:26:40,778 | INFO     | all job control threads have been joined
[2026-05-05 05:27:42] 2026-05-05 03:26:40,817 | INFO     | all payload control threads have been joined
[2026-05-05 05:27:42] 2026-05-05 03:26:41,194 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-05-05 05:27:42] 2026-05-05 03:26:41,267 | INFO     | all data control threads have been joined
[2026-05-05 05:27:42] 2026-05-05 03:26:41,290 | INFO     | [job] retrieve thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:41,380 | INFO     | [job] job monitor thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:41,489 | INFO     | [payload] run_realtimelog thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:41,606 | INFO     | [payload] failed_post thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:41,614 | INFO     | [job] validate thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:41,701 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-05-05 05:27:42] 2026-05-05 03:26:41,783 | INFO     | [job] control thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:41,823 | INFO     | [payload] control thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:41,934 | INFO     | [job] create_data_payload thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:42,093 | INFO     | [payload] validate_post thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:42,208 | INFO     | [payload] validate_pre thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:42,272 | INFO     | [data] control thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:42,332 | INFO     | [payload] execute_payloads thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:42,370 | INFO     | [data] copytool_in thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:43,199 | INFO     | [data] copytool_out thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:43,285 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-05-05 05:27:42] 2026-05-05 03:26:44,290 | INFO     | [job] queue monitor thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:26:45,706 | INFO     | [data] queue_monitor thread has finished
[2026-05-05 05:27:42] 2026-05-05 03:27:10,208 | INFO     | PID=879876 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-05-05 05:27:42] 2026-05-05 03:27:10,208 | INFO     | .. there are 9 such processes running
[2026-05-05 05:27:42] 2026-05-05 03:27:10,208 | INFO     | found 0 job(s) in 20 queues
[2026-05-05 05:27:42] 2026-05-05 03:27:10,208 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-05-05 05:27:42] 2026-05-05 03:27:10,208 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-05-05 05:27:42] 2026-05-05 03:27:37,138 | INFO     | [monitor] cgroup control has ended
[2026-05-05 05:27:42] 2026-05-05 03:27:37,250 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22694422198080)>', '<ExcThread(monitor, started 22694110119680)>']
[2026-05-05 05:27:42] 2026-05-05 03:27:37,331 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-05-05 05:27:42] 2026-05-05 03:27:37,332 | INFO     | [monitor] control thread has ended
[2026-05-05 05:27:42] 2026-05-05 03:27:42,275 | INFO     | all workflow threads have been joined
[2026-05-05 05:27:42] 2026-05-05 03:27:42,275 | INFO     | end of generic workflow (traces error code: 0)
[2026-05-05 05:27:42] 2026-05-05 03:27:42,276 | INFO     | traces error code: 0
[2026-05-05 05:27:42] 2026-05-05 03:27:42,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-05-05 05:27:42] 2026-05-05 03:27:42,434 [wrapper] ==== pilot stdout END ====
[2026-05-05 05:27:42] 2026-05-05 03:27:42,437 [wrapper] ==== wrapper stdout RESUME ====
[2026-05-05 05:27:42] 2026-05-05 03:27:42,439 [wrapper] pilotpid: 879876
[2026-05-05 05:27:42] 2026-05-05 03:27:42,441 [wrapper] Pilot exit status: 0
[2026-05-05 05:27:42] 2026-05-05 03:27:42,451 [wrapper] pandaids: 7128670723
[2026-05-05 05:27:42] 2026-05-05 03:27:42,521 [wrapper] cleanup supervisor_pilot 1055006 879877
[2026-05-05 05:27:42] 2026-05-05 03:27:42,525 [wrapper] Test setup, not cleaning
[2026-05-05 05:27:42] 2026-05-05 03:27:42,528 [wrapper] apfmon messages muted
[2026-05-05 05:27:42] 2026-05-05 03:27:42,530 [wrapper] ==== wrapper stdout END ====
[2026-05-05 05:27:42] 2026-05-05 03:27:42,533 [wrapper] ==== wrapper stderr END ====
[2026-05-05 05:27:42]  *** Error codes and diagnostics ***
[2026-05-05 05:27:42]     "exeErrorCode": 0,
[2026-05-05 05:27:42]     "pilotErrorCode": 0,
[2026-05-05 05:27:42]  *** Listing of results directory ***
[2026-05-05 05:27:42] total 411568
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc    683926 May  4 10:59 pilot3.tar.gz
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc      5631 May  4 11:28 queuedata.json
[2026-05-05 05:27:42] -rwx------. 1 boinc boinc     36322 May  4 11:29 runpilot2-wrapper.sh
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc       100 May  5 03:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-05-05 05:27:42] -rwxr-xr-x. 1 boinc boinc      7986 May  5 03:04 run_atlas
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc       105 May  5 03:04 job.xml
[2026-05-05 05:27:42] -rw-r--r--. 2 boinc boinc 244946319 May  5 03:04 EVNT.50010698._000021.pool.root.1
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc      6483 May  5 03:04 init_data.xml
[2026-05-05 05:27:42] -rw-r--r--. 2 boinc boinc     15667 May  5 03:04 start_atlas.sh
[2026-05-05 05:27:42] drwxrwx--x. 2 boinc boinc      4096 May  5 03:04 shared
[2026-05-05 05:27:42] -rw-r--r--. 2 boinc boinc    697398 May  5 03:04 input.tar.gz
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc         0 May  5 03:04 boinc_lockfile
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc      2512 May  5 03:04 pandaJob.out
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc   1002597 May  5 03:04 agis_schedconf.cvmfs.json
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc   1505918 May  5 03:04 agis_ddmendpoints.agis.ALL.json
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc       452 May  5 03:04 workernode_map.json
[2026-05-05 05:27:42] drwx------. 5 boinc boinc      4096 May  5 03:04 pilot3
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc 170181862 May  5 05:25 HITS.50010700._000677.pool.root.1
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc       487 May  5 05:25 boinc_task_state.xml
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc      1049 May  5 05:26 memory_monitor_summary.json
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc        95 May  5 05:26 pilot_heartbeat.json
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc    271350 May  5 05:26 log.50010700._000677.job.log.tgz.1
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc      6413 May  5 05:26 heartbeat_new.json
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc      6304 May  5 05:26 heartbeat.json
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc        27 May  5 05:27 wrapper_checkpoint.txt
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc      8192 May  5 05:27 boinc_mmap_file
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc      5016 May  5 05:27 pilotlog.txt
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc    820649 May  5 05:27 log.50010700._000677.job.log.1
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc       357 May  5 05:27 output.list
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc       410 May  5 05:27 runtime_log
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc   1105920 May  5 05:27 result.tar.gz
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc      8827 May  5 05:27 runtime_log.err
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc       662 May  5 05:27 6714ae18938c.diag
[2026-05-05 05:27:42] -rw-r--r--. 1 boinc boinc     20796 May  5 05:27 stderr.txt
[2026-05-05 05:27:42] HITS file was successfully produced:
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc 170181862 May  5 05:25 shared/HITS.pool.root.1
[2026-05-05 05:27:42]  *** Contents of shared directory: ***
[2026-05-05 05:27:42] total 407192
[2026-05-05 05:27:42] -rw-r--r--. 2 boinc boinc 244946319 May  5 03:04 ATLAS.root_0
[2026-05-05 05:27:42] -rw-r--r--. 2 boinc boinc     15667 May  5 03:04 start_atlas.sh
[2026-05-05 05:27:42] -rw-r--r--. 2 boinc boinc    697398 May  5 03:04 input.tar.gz
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc 170181862 May  5 05:25 HITS.pool.root.1
[2026-05-05 05:27:42] -rw-------. 1 boinc boinc   1105920 May  5 05:27 result.tar.gz
05:27:44 (875753): run_atlas exited; CPU time 32524.077728
05:27:44 (875753): called boinc_finish(0)

</stderr_txt>
]]>

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